mRNA_S-ischiensis_contig1.1086.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1086.1
Unique NamemRNA_S-ischiensis_contig1.1086.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7505440..7506516 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size506
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.5838113-CDS-S-ischiensis_contig1:7505439..75056581622815359.5838113-CDS-S-ischiensis_contig1:7505439..7505658Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7505440..7505658 +
1695739659.2445831-CDS-S-ischiensis_contig1:7505439..75056581695739659.2445831-CDS-S-ischiensis_contig1:7505439..7505658Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7505440..7505658 +
1622815359.5976803-CDS-S-ischiensis_contig1:7506231..75065161622815359.5976803-CDS-S-ischiensis_contig1:7506231..7506516Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7506232..7506516 +
1695739659.2536986-CDS-S-ischiensis_contig1:7506231..75065161695739659.2536986-CDS-S-ischiensis_contig1:7506231..7506516Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7506232..7506516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1086.1prot_S-ischiensis_contig1.1086.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7505440..7506516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1086.1

>prot_S-ischiensis_contig1.1086.1 ID=prot_S-ischiensis_contig1.1086.1|Name=mRNA_S-ischiensis_contig1.1086.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp
RPGGGRATGARPRGCHTLLAWGRVESVEYCDCRLPLPEPARVTEVKLVFR
GHARCNRHACHKLERVHFYQPVQGTPHVPVPLLLRRLMSWLKRGAGAAGA
AGDHPRQALLVAATLRLATASASLSFALCAARLMASGGGSGSGPRADELA
MPRPVEVALGELIGAITE
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mRNA from alignment at S-ischiensis_contig1:7505440..7506516+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1086.1 ID=mRNA_S-ischiensis_contig1.1086.1|Name=mRNA_S-ischiensis_contig1.1086.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1077bp|location=Sequence derived from alignment at S-ischiensis_contig1:7505440..7506516+ (Schizocladia ischiensis KU_0333)
CGGCCCGGGGGGGGGCGGGCCACGGGGGCACGGCCCAGGGGCTGCCACAC
GCTGCTGGCCTGGGGCCGAGTGGAGTCTGTGGAGTACTGCGACTGCCGAC
TGCCACTGCCAGAGCCGGCCAGGGTGACAGAGGTGAAATTAGTCTTCCGT
GGCCACGCCAGGTGTAACCGCCACGCCTGCCACAAGCTGGAGCGGGTGCA
CTTCTATCAGCCCGTGCAGGTGGGAGCCGAGCGTGTGCTTGCACCCATGA
TGATGGCTTGAGCGCGTGCCGAAAGCCTACTGTACCTCTGCCCTCTGTGC
TGCCGCCACCGCCGGGTTTGGCAGCGGTGGCGGCGGCAGCGGTTGTGACA
TTTGTGGCAGTGGATGTTTCCAGGGAGGGCGGCAGGTGACCCTCGTCACG
TCCTCACCACTCCTTCTGGCGGGGTGCAGGCCGAGGGTGACCGGTGTTGG
CCATAGACTTGACGGCTTCACAATGATATGCCACCCGACTCAACTTTACT
CCCCAGCCCTGTGCACAGATCGTACCATGATGTGGCCCGTCTCCCTCCAC
TCCCTCCCCGCACTGCCCGCCGCCCACCTCCCTTGCCCTCTCCGCCTTCT
CCACCGCCTCGACACCGCCTCTTTGCCCCAACAAGAAACGAAACGTTATC
CGCCCAGCCCCTCCCTCCTCTACCCCTCTTGGCCCCCTCCCCCTCCCTCC
TCTCTCCCCCCCCCCACGCACCAGCGCATCTCCCGTTCGCTAACCCTGCA
TACTTTGCTCTGCCTGCTCTGTTCTCGCCCTCGGCCGCCCAGGGCACTCC
GCACGTCCCGGTGCCGCTGCTCCTCCGACGCCTGATGTCCTGGCTCAAGC
GCGGGGCAGGCGCAGCAGGAGCGGCAGGGGACCACCCACGGCAAGCCCTC
CTGGTGGCCGCCACGCTGCGCCTGGCGACCGCTTCCGCCTCCCTCAGCTT
CGCCCTGTGCGCGGCCCGCCTCATGGCCTCAGGCGGCGGCAGCGGCAGTG
GCCCAAGGGCTGACGAGCTTGCCATGCCGCGGCCGGTAGAGGTAGCCTTG
GGGGAGCTCATCGGAGCCATCACGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7505440..7506516+

>mRNA_S-ischiensis_contig1.1086.1 ID=mRNA_S-ischiensis_contig1.1086.1|Name=mRNA_S-ischiensis_contig1.1086.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig1:7505440..7506516+ (Schizocladia ischiensis KU_0333)
CGGCCCGGGGGGGGGCGGGCCACGGGGGCACGGCCCAGGGGCTGCCACAC
GCTGCTGGCCTGGGGCCGAGTGGAGTCTGTGGAGTACTGCGACTGCCGAC
TGCCACTGCCAGAGCCGGCCAGGGTGACAGAGGTGAAATTAGTCTTCCGT
GGCCACGCCAGGTGTAACCGCCACGCCTGCCACAAGCTGGAGCGGGTGCA
CTTCTATCAGCCCGTGCAGCGGCCCGGGGGGGGGCGGGCCACGGGGGCAC
GGCCCAGGGGCTGCCACACGCTGCTGGCCTGGGGCCGAGTGGAGTCTGTG
GAGTACTGCGACTGCCGACTGCCACTGCCAGAGCCGGCCAGGGTGACAGA
GGTGAAATTAGTCTTCCGTGGCCACGCCAGGTGTAACCGCCACGCCTGCC
ACAAGCTGGAGCGGGTGCACTTCTATCAGCCCGTGCAGGGCACTCCGCAC
GTCCCGGTGCCGCTGCTCCTCCGACGCCTGATGTCCTGGCTCAAGCGCGG
GGCAGGCGCAGCAGGAGCGGCAGGGGACCACCCACGGCAAGCCCTCCTGG
TGGCCGCCACGCTGCGCCTGGCGACCGCTTCCGCCTCCCTCAGCTTCGCC
CTGTGCGCGGCCCGCCTCATGGCCTCAGGCGGCGGCAGCGGCAGTGGCCC
AAGGGCTGACGAGCTTGCCATGCCGCGGCCGGTAGAGGTAGCCTTGGGGG
AGCTCATCGGAGCCATCACGGAGGGCACTCCGCACGTCCCGGTGCCGCTG
CTCCTCCGACGCCTGATGTCCTGGCTCAAGCGCGGGGCAGGCGCAGCAGG
AGCGGCAGGGGACCACCCACGGCAAGCCCTCCTGGTGGCCGCCACGCTGC
GCCTGGCGACCGCTTCCGCCTCCCTCAGCTTCGCCCTGTGCGCGGCCCGC
CTCATGGCCTCAGGCGGCGGCAGCGGCAGTGGCCCAAGGGCTGACGAGCT
TGCCATGCCGCGGCCGGTAGAGGTAGCCTTGGGGGAGCTCATCGGAGCCA
TCACGGAG
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