mRNA_S-ischiensis_contig1.1084.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1084.1
Unique NamemRNA_S-ischiensis_contig1.1084.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7501826..7502289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size379
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1084.1prot_S-ischiensis_contig1.1084.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7501845..7502289 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.4541397-UTR-S-ischiensis_contig1:7501825..75018441622815359.4541397-UTR-S-ischiensis_contig1:7501825..7501844Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7501826..7501844 +
1695739659.194386-UTR-S-ischiensis_contig1:7501825..75018441695739659.194386-UTR-S-ischiensis_contig1:7501825..7501844Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7501826..7501844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.4687781-CDS-S-ischiensis_contig1:7501844..75019031622815359.4687781-CDS-S-ischiensis_contig1:7501844..7501903Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7501845..7501903 +
1695739659.2054174-CDS-S-ischiensis_contig1:7501844..75019031695739659.2054174-CDS-S-ischiensis_contig1:7501844..7501903Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7501845..7501903 +
1622815359.4834251-CDS-S-ischiensis_contig1:7501988..75022891622815359.4834251-CDS-S-ischiensis_contig1:7501988..7502289Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7501989..7502289 +
1695739659.213641-CDS-S-ischiensis_contig1:7501988..75022891695739659.213641-CDS-S-ischiensis_contig1:7501988..7502289Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7501989..7502289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1084.1

>prot_S-ischiensis_contig1.1084.1 ID=prot_S-ischiensis_contig1.1084.1|Name=mRNA_S-ischiensis_contig1.1084.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=120bp
MRTAAGPGRLRRESAKHRCRAWWNGPASTDLGPAYNRLCNDDFAKWLLAE
PSGLSPSLGLEYCPDEDQKATATAAIATSDAVAAAGVVDEDGKRHAVETL
ITNLCSQSCFQPAFSETLER
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mRNA from alignment at S-ischiensis_contig1:7501826..7502289+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1084.1 ID=mRNA_S-ischiensis_contig1.1084.1|Name=mRNA_S-ischiensis_contig1.1084.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=464bp|location=Sequence derived from alignment at S-ischiensis_contig1:7501826..7502289+ (Schizocladia ischiensis KU_0333)
GACTTCGGTGGCATTGGCCATGCGGACTGCCGCAGGACCGGGGAGATTAA
GGAGAGAAAGCGCCAAGCATAGGTGCAGGTGAGCACCTCTTTTGTTGTGC
ATATCTCCCCTCTCAAGCATTATTTCCCCCTGGGCGCTCACCCAAATCCC
CCCGACTTTGCAGGGCTTGGTGGAATGGGCCCGCGTCAACCGACCTAGGC
CCCGCGTACAACAGGCTCTGCAATGATGACTTTGCAAAGTGGCTCCTGGC
AGAACCTAGTGGCTTGAGCCCCTCTCTGGGCCTCGAGTACTGCCCTGATG
AGGACCAGAAGGCTACAGCTACTGCCGCCATTGCAACCTCGGATGCGGTC
GCCGCTGCTGGCGTCGTGGATGAGGATGGGAAGAGACACGCGGTGGAGAC
GCTCATCACAAACCTGTGCTCCCAATCTTGCTTCCAGCCGGCATTCTCCG
AGACGCTTGAGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7501826..7502289+

>mRNA_S-ischiensis_contig1.1084.1 ID=mRNA_S-ischiensis_contig1.1084.1|Name=mRNA_S-ischiensis_contig1.1084.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=720bp|location=Sequence derived from alignment at S-ischiensis_contig1:7501826..7502289+ (Schizocladia ischiensis KU_0333)
ATGCGGACTGCCGCAGGACCGGGGAGATTAAGGAGAGAAAGCGCCAAGCA
TAGGTGCAGATGCGGACTGCCGCAGGACCGGGGAGATTAAGGAGAGAAAG
CGCCAAGCATAGGTGCAGGGCTTGGTGGAATGGGCCCGCGTCAACCGACC
TAGGCCCCGCGTACAACAGGCTCTGCAATGATGACTTTGCAAAGTGGCTC
CTGGCAGAACCTAGTGGCTTGAGCCCCTCTCTGGGCCTCGAGTACTGCCC
TGATGAGGACCAGAAGGCTACAGCTACTGCCGCCATTGCAACCTCGGATG
CGGTCGCCGCTGCTGGCGTCGTGGATGAGGATGGGAAGAGACACGCGGTG
GAGACGCTCATCACAAACCTGTGCTCCCAATCTTGCTTCCAGCCGGCATT
CTCCGAGACGCTTGAGAGGGGCTTGGTGGAATGGGCCCGCGTCAACCGAC
CTAGGCCCCGCGTACAACAGGCTCTGCAATGATGACTTTGCAAAGTGGCT
CCTGGCAGAACCTAGTGGCTTGAGCCCCTCTCTGGGCCTCGAGTACTGCC
CTGATGAGGACCAGAAGGCTACAGCTACTGCCGCCATTGCAACCTCGGAT
GCGGTCGCCGCTGCTGGCGTCGTGGATGAGGATGGGAAGAGACACGCGGT
GGAGACGCTCATCACAAACCTGTGCTCCCAATCTTGCTTCCAGCCGGCAT
TCTCCGAGACGCTTGAGAGG
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