mRNA_S-ischiensis_contig1.1080.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Match: A0A835YY77_9STRA (Cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY77_9STRA) HSP 1 Score: 181 bits (458), Expect = 4.390e-54 Identity = 97/140 (69.29%), Postives = 114/140 (81.43%), Query Frame = 3
Query: 6 GETLLPLAASGLAVAMGLNLLELLTLQLPSFEGGLDTIMTLPRTSRAFLLGSSSALVASPCCTPVLASILGFVASSQDPVLGLALLLAYSVGYTTPLLVAGAASGALSRLMSAAGLTWIAPASGAVLISYGTYGALETLY 425
G LPL +S +A+A GLNLLELL LPS+E G+++ +LPR RA+ LG+SSALVASPCCTPVLASILGFVASSQDP LGLALLLAYS+GYTTPL+ AG ASGALSR+MSA+GLTWI P S A LISYGT+ L ++
Sbjct: 79 GGLALPLVSSVIAIAAGLNLLELLNFTLPSWEAGVESFNSLPRVGRAYALGASSALVASPCCTPVLASILGFVASSQDPALGLALLLAYSLGYTTPLMAAGTASGALSRIMSASGLTWITPVSAAALISYGTFTGLGAIF 218
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Match: A0A4D9CLR8_9STRA (DsbD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLR8_9STRA) HSP 1 Score: 142 bits (357), Expect = 4.290e-37 Identity = 78/138 (56.52%), Postives = 107/138 (77.54%), Query Frame = 3
Query: 18 LPLAASGLAVAMGLNLLELLTLQLPSFEGGLDTIMTLPRTSRAFLLGSSSALVASPCCTPVLASILGFVASSQDPVLGLALLLAYSVGYTTPLLVAGAASGALSRLMSAAG--LTWIAPASGAVLISYGTYGALETLY 425
LPL AS +A+ MGLNLL+L++L+LPSF+ L + P + +AFLLG++SAL+ASPC TPVLASILGFVA+S +P LG LL +YS+GY+TPLL+AG SG ++ ++ G +W+ PA+GA+LISYGTY +L TL+
Sbjct: 256 LPLTASAVAIVMGLNLLDLVSLRLPSFDAALQ-LERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWVTPATGALLISYGTYSSLATLF 392
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Match: A0A7S2UUE9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUE9_9STRA) HSP 1 Score: 140 bits (353), Expect = 2.360e-36 Identity = 84/147 (57.14%), Postives = 105/147 (71.43%), Query Frame = 3
Query: 6 GETLLPLAASGLAVAMGLNLLELLTLQLPSFEGGLD-------TIMTLPRTSRAFLLGSSSALVASPCCTPVLASILGFVASSQDPVLGLALLLAYSVGYTTPLLVAGAASGALSRLMSAAGLTWIAPASGAVLISYGTYGALETLY 425
G TL P+ A LAV MGL+LL+LL+L LPS GG+D + LPR RAF LG+SSAL+++PC TPVLA+ILGFVA+S DP+LG LLLAY+ GYTTPL++AG ASG S MS+ GLTW+ P +GA+LI YG L L+
Sbjct: 268 GSTL-PVLAGALAVVMGLSLLDLLSLPLPS-AGGMDGSSADEGLLDRLPRPLRAFGLGASSALISTPCSTPVLAAILGFVATSADPLLGGGLLLAYTAGYTTPLMIAGVASGKASEAMSSKGLTWVTPLTGAILIFYGINSVLNALF 412
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Match: A0A0G4H6S3_VITBC (DsbD domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H6S3_VITBC) HSP 1 Score: 132 bits (332), Expect = 2.700e-34 Identity = 71/145 (48.97%), Postives = 104/145 (71.72%), Query Frame = 3
Query: 9 ETLLPLAASGLAVAMGLNLLELLTLQLPSFEGG-LDTIMTLPRTSRAFLLGSSSALVASPCCTPVLASILGFVASSQDPVLGLALLLAYSVGYTTPLLVAGAASGALSRLMSAA----GLTWIAPASGAVLISYGTYGALETLYK 428
E ++P+AAS LAV MGLN+L L+++ P+F+GG LD LP+ + FL G +SAL+A+PC TPVL ++LG+VAS+ DP+LG ALL AY++GY +P++ AG ASG L++L++ GL WI P +G +L+ YGT+ L L+
Sbjct: 152 ERIVPVAASVLAVVMGLNVLNLVSISFPAFDGGELDEGRKLPKALQDFLFGVTSALIATPCSTPVLTALLGYVASTGDPLLGAALLFAYTLGYASPVVAAGTASGRLAQLLTQGEGREGLRWITPVTGGLLVGYGTFSTLNALFS 296
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Match: UPI0012635035 (cytochrome c-type biogenesis ccda-like chloroplastic protein n=1 Tax=Pistacia vera TaxID=55513 RepID=UPI0012635035) HSP 1 Score: 122 bits (306), Expect = 1.470e-31 Identity = 74/139 (53.24%), Postives = 96/139 (69.06%), Query Frame = 3
Query: 18 LPLAASGLAVAMGLNLLELLTLQLPSFEGGLD---TIMTLPRTSRAFLLGSSSALVASPCCTPVLASILGFVASSQDPVLGLALLLAYSVGYTTPLLVAGAASGALSRLMSAAGLT-WIAPASGAVLISYGTYGALETL 422
LPLAASGLAV MGLNLLE++ LQLPSF D P + +A+L G + AL ASPC TPVLA++LG+VA+S+DPV+G +LLL Y+ GY PLL+A + +GAL L+S + WI P SGA+L+ G Y L+ L
Sbjct: 46 LPLAASGLAVVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPVSGALLLGGGVYTFLDRL 184
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Match: A0A2G5CCN4_AQUCA (DsbD domain-containing protein n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5CCN4_AQUCA) HSP 1 Score: 124 bits (311), Expect = 1.850e-31 Identity = 73/140 (52.14%), Postives = 99/140 (70.71%), Query Frame = 3
Query: 18 LPLAASGLAVAMGLNLLELLTLQLPSFEGGLD---TIMTLPRTSRAFLLGSSSALVASPCCTPVLASILGFVASSQDPVLGLALLLAYSVGYTTPLLVAGAASGALSRLMSAAGLT-WIAPASGAVLISYGTYGALETLY 425
LP+AASGLAV MGLNLLE++ LQLPSF +D LP + +A+L G + AL ASPC TPVLA++LG+VA+S+DP++G +LLL Y+ GY PLL+A + +GAL L+S + WI P SGA+L+ G Y L+ L+
Sbjct: 123 LPIAASGLAVIMGLNLLEIIQLQLPSFFDNVDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASKDPIIGSSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPMSGALLLGGGMYTLLDRLF 262
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Match: UPI0011DF661D (cytochrome c-type biogenesis ccda-like chloroplastic protein 2 isoform X2 n=1 Tax=Cannabis sativa TaxID=3483 RepID=UPI0011DF661D) HSP 1 Score: 124 bits (311), Expect = 2.030e-31 Identity = 74/140 (52.86%), Postives = 97/140 (69.29%), Query Frame = 3
Query: 18 LPLAASGLAVAMGLNLLELLTLQLPSFEGGLD---TIMTLPRTSRAFLLGSSSALVASPCCTPVLASILGFVASSQDPVLGLALLLAYSVGYTTPLLVAGAASGALSRLMSAAGLT-WIAPASGAVLISYGTYGALETLY 425
LPLAASGLAV MGLNLLE++ LQLPSF D LP + +A+L G + AL ASPC TPVLAS+L +VA+S+DP++G +LLL Y+ GY PLL+A + +GAL L+S + WI P SGA+L+ G Y L+ L+
Sbjct: 126 LPLAASGLAVVMGLNLLEIIELQLPSFFDNFDPRAAAANLPSSVQAYLAGLTFALAASPCSTPVLASLLAYVATSKDPIIGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRKFSAWINPVSGALLLGGGVYTFLDRLF 265
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Match: C1E9C4_MICCC (DsbD domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E9C4_MICCC) HSP 1 Score: 124 bits (312), Expect = 2.310e-31 Identity = 74/136 (54.41%), Postives = 97/136 (71.32%), Query Frame = 3
Query: 15 LLPLAASGLAVAMGLNLLELLTLQLPSFEGGLDTI-MTLPRTSRAFLLGSSSALVASPCCTPVLASILGFVASSQDPVLGLALLLAYSVGYTTPLLVAGAASGALSRLMSAAGLT-WIAPASGAVLISYGTYGALE 416
+LP+A S LAVAMGLNLLE++ +Q PSF D M+LP ++A+L G + AL ASPC TPVLA++L +V+S+ DPV G ALLL Y+ GY PLL A A+G+L R+MSA T W+ PASG +L++ GTYG L
Sbjct: 147 ILPIAVSVLAVAMGLNLLEVIVVQFPSFGTDFDARKMSLPPPAQAYLAGLAFALAASPCSTPVLATLLAYVSSTGDPVTGGALLLTYTSGYVAPLLAAATATGSLGRIMSARQYTAWVTPASGLMLVAGGTYGFLS 282
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Match: A0A443NJX1_9MAGN (Cytochrome c-type biogenesis ccda-like chloroplastic protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NJX1_9MAGN) HSP 1 Score: 125 bits (314), Expect = 3.760e-31 Identity = 74/140 (52.86%), Postives = 98/140 (70.00%), Query Frame = 3
Query: 18 LPLAASGLAVAMGLNLLELLTLQLPSFEGGLD---TIMTLPRTSRAFLLGSSSALVASPCCTPVLASILGFVASSQDPVLGLALLLAYSVGYTTPLLVAGAASGALSRLMSAAGLT-WIAPASGAVLISYGTYGALETLY 425
LPLAASGLA+ MGLNLLE++ LQLPSF +D P + +A+L G + AL ASPC TPVLA+ILG+VA+S+DPV+G +LLL Y+ GY PLL+A + +GAL L+S + WI P SGA+L+ G Y L+ L+
Sbjct: 206 LPLAASGLAIVMGLNLLEIIELQLPSFFNNIDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATILGYVAASKDPVIGGSLLLTYTTGYVAPLLLAASFAGALQSLLSFRKFSAWINPVSGALLLGGGVYTMLDKLF 345
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Match: A0A6I9R8P7_ELAGV (cytochrome c-type biogenesis ccda-like chloroplastic protein 2 n=4 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R8P7_ELAGV) HSP 1 Score: 125 bits (313), Expect = 4.210e-31 Identity = 74/140 (52.86%), Postives = 97/140 (69.29%), Query Frame = 3
Query: 18 LPLAASGLAVAMGLNLLELLTLQLPSFEGGLD---TIMTLPRTSRAFLLGSSSALVASPCCTPVLASILGFVASSQDPVLGLALLLAYSVGYTTPLLVAGAASGALSRLMSAAGLT-WIAPASGAVLISYGTYGALETLY 425
LP AASGLAV MGLNLLE++ +QLPSF D P + +A+L G + AL ASPC TPVLA++LG+VA+S+DPV+G +LLL Y+ GY PLLVA + +GAL L+S L+ WI P SGA+L+ G Y L+ L+
Sbjct: 193 LPFAASGLAVVMGLNLLEIIEIQLPSFFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAASRDPVIGGSLLLTYTTGYVAPLLVAASFAGALQNLLSFRRLSAWINPVSGALLLGGGVYTLLDRLF 332 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1080.1 >prot_S-ischiensis_contig1.1080.1 ID=prot_S-ischiensis_contig1.1080.1|Name=mRNA_S-ischiensis_contig1.1080.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=131bp MGLNLLELLTLQLPSFEGGLDTIMTLPRTSRAFLLGSSSALVASPCCTPVback to top mRNA from alignment at S-ischiensis_contig1:7471288..7473530+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.1080.1 ID=mRNA_S-ischiensis_contig1.1080.1|Name=mRNA_S-ischiensis_contig1.1080.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2243bp|location=Sequence derived from alignment at S-ischiensis_contig1:7471288..7473530+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:7471288..7473530+ >mRNA_S-ischiensis_contig1.1080.1 ID=mRNA_S-ischiensis_contig1.1080.1|Name=mRNA_S-ischiensis_contig1.1080.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=786bp|location=Sequence derived from alignment at S-ischiensis_contig1:7471288..7473530+ (Schizocladia ischiensis KU_0333)back to top |