mRNA_S-ischiensis_contig1.1076.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1076.1
Unique NamemRNA_S-ischiensis_contig1.1076.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1076.1 vs. uniprot
Match: D7FW89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW89_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 5.820e-14
Identity = 56/134 (41.79%), Postives = 69/134 (51.49%), Query Frame = 3 
Query:   90 PRSSLLGRLETFLPKLAAANKEVEALAAEGKLETMDAGLAPCDGGEEVHV---DDDEXXXXXXXXXXXGGTASDTEG--ATGRVVQLDFALGNFDGTPMAKLEEAK-------------TEGDGDCEGVEDGGD 437
            P SSLLGRLE FLP++  AN++ E LA EGKLE +          ++       DDE           GG      G  A GR VQLDFALG+FD TP+AK+E+ K             T G  + EGVE+GGD
Sbjct:    4 PPSSLLGRLEAFLPEMEKANQKTEKLAQEGKLEVLXXXXXXXXSDKQTEGAEGTDDEAGDSEVEEEEEGGQVEGAAGVVAAGRTVQLDFALGDFDDTPIAKMEQEKEAAREAGGVDAGATGGVEEEEGVEEGGD 137
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BLAST of mRNA_S-ischiensis_contig1.1076.1 vs. uniprot
Match: A0A836CNZ4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.310e-12
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 3 
Query:   78 MQAPPRSSLLGRLETFLPKLAAANKEVEALAAEGKLETMDAGLA--PCDGGEEVHVDDD---EXXXXXXXXXXXGGTASDTEGATGRVVQLDFALGNFDGTPMAKLEE 386
            M+ PP SSLLG+LE FLPKLA AN++++    EG+ ET+DA LA    DG +E     D   +              A D +G  G+VVQL FALG+FD TP+A+ EE
Sbjct:    1 MELPP-SSLLGKLEAFLPKLAQANRDLQQQTLEGQAETIDAHLALDAADGNDEESESSDGEGDVAVAGASARAINEGAGDMQGG-GKVVQLSFALGDFDDTPVAQFEE 106
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW89_ECTSI5.820e-1441.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CNZ4_9STRA1.310e-1245.37Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7439813..7443002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003810.1
Exons2
Model size693
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1076.1prot_S-ischiensis_contig1.1076.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7439847..7442925 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.7210782-UTR-S-ischiensis_contig1:7439812..74398461622815481.7210782-UTR-S-ischiensis_contig1:7439812..7439846Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7439813..7439846 -
1695739726.600929-UTR-S-ischiensis_contig1:7439812..74398461695739726.600929-UTR-S-ischiensis_contig1:7439812..7439846Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7439813..7439846 -
1622815481.7565506-UTR-S-ischiensis_contig1:7442925..74430021622815481.7565506-UTR-S-ischiensis_contig1:7442925..7443002Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7442926..7443002 -
1695739726.6286461-UTR-S-ischiensis_contig1:7442925..74430021695739726.6286461-UTR-S-ischiensis_contig1:7442925..7443002Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7442926..7443002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.7337024-CDS-S-ischiensis_contig1:7439846..74401701622815481.7337024-CDS-S-ischiensis_contig1:7439846..7440170Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7439847..7440170 -
1695739726.6096983-CDS-S-ischiensis_contig1:7439846..74401701695739726.6096983-CDS-S-ischiensis_contig1:7439846..7440170Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7439847..7440170 -
1622815481.7452562-CDS-S-ischiensis_contig1:7442667..74429251622815481.7452562-CDS-S-ischiensis_contig1:7442667..7442925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7442668..7442925 -
1695739726.6185389-CDS-S-ischiensis_contig1:7442667..74429251695739726.6185389-CDS-S-ischiensis_contig1:7442667..7442925Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7442668..7442925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1076.1

>prot_S-ischiensis_contig1.1076.1 ID=prot_S-ischiensis_contig1.1076.1|Name=mRNA_S-ischiensis_contig1.1076.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=194bp
MQAPPRSSLLGRLETFLPKLAAANKEVEALAAEGKLETMDAGLAPCDGGE
EVHVDDDEEEGSEDLEEEEGGTASDTEGATGRVVQLDFALGNFDGTPMAK
LEEAKTEGDGDCEGVEDGGDANSTAVCGCGGGEGAPCVCSRGRDGGSGGG
GGTGGAAGTKDATPGTAAAARLLNEANAEEPAAKKSRPVITEL*
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mRNA from alignment at S-ischiensis_contig1:7439813..7443002-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1076.1 ID=mRNA_S-ischiensis_contig1.1076.1|Name=mRNA_S-ischiensis_contig1.1076.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3190bp|location=Sequence derived from alignment at S-ischiensis_contig1:7439813..7443002- (Schizocladia ischiensis KU_0333)
GCTGCTGCCGCTGCTGCAGCAACCGGTCCACACATGGGCAGCTTGCGGGC
CTTTGTCCTGCTGCATCCTCCGTTACTATGCAGGCACCTCCTCGGAGCTC
GCTCTTAGGGCGACTGGAAACATTTTTGCCCAAACTGGCAGCCGCCAATA
AGGAGGTGGAGGCGCTAGCCGCAGAAGGCAAGCTGGAGACGATGGATGCC
GGCCTGGCGCCGTGTGACGGTGGGGAGGAGGTGCATGTCGATGACGACGA
GGAGGAGGGCTCGGAGGATTTGGAGGAGGAGGAGGGGGGGACTGCGTCCG
ACACGGAAGGAGCAACTGGCCGTGTTGTTCAGCTTGTGAGTCCGACCAAA
TACGCGCGTTGGCCATGCTTTGACGCGCCCACCCTCTGTTCACAACCTAG
GGCGATATCCTGCGAACACACGATGTTTGTTGGGGACACGTCGTTGTCGG
TGCTGTGTGTCCTGTCAATGTGTCCTACGGGACTTCGCAACCCCCGCCTC
ACGATGATATATGTACTTCGAAGAACACATCGATCAGTTCGCCGTTGGGG
CTAAACCGTTGGGGCAGAATGATACGCGGCGTACACTTTCCCCCCGTTGT
TTCGATGGTATGAAAATGAGATAGGCCCCCTTGCGTATGCGCCTCAAGGA
CATCCGAAACCTTACCCAAGTTACTGCCTCCCGCTCTGGTTCATCTTCTA
TTGTACTTCGAAGTACGAGAGAGGGCAGCCCATGTTGAGGTTAATGGTGA
CGTGGACCGCACCTCACTTCGTATTTATCTCCGATGCCTATATTGAGCTA
CCTGTGTGAAGATGTTTAGCTTGAGTGTCCGCCCGGCCACGAAAGGTCAC
TTGGTTCACAAAGCCCCCCGACAACACCGACACCGGCTCCCTAGTGGGTG
GAGCGGCTTGTTCCAGTCGAGTTGGTCGCGGGTTCGAATCCAGGTTCCCG
CATGTTTCTTTCCAGGGCCCCGCTCGCCACCCGCTAGCCGCATTCATTGA
CTACAGTACTCCCCCCCTGCCCTTTGTTTCTTGGTTTTCTGCCCTGCAAG
TGAATTGAAGGGCGACTGGGGAGGCCCCAATTTTGGGACGGGCCCCGGAA
CTGGCTCGTGTACTCTGTCTCTTTAATACTTTGAAGGAGTGCTTACCGAG
GTTTGCACTTGGAGCGTAGGTACTTTGCAAGTACGAACATATGTCCTCGT
CGGAGGATGAAACCCTTTGCTACAACCTTGGGGCACTCGCGGTATGTCGA
TCCACTCACGGACCAAGATCATGCGCCCGCAACCTTACCAGTACTTCATG
AGCACCCGGGCTCCCGGGGGGCCACCGACACGTGTCAAAGCCTAGCCTAA
GGCCTTCCAAGGCCGTGCTCGAGTACTCTACGTGTACTTGGAAGTCAAGC
GCTACTGTATTAATGCCCTGCGCTGACCAACCTCTCAACGCGCCTCAGCA
TGCAGTGCCCAGTGCACATCGTTATTGCTACAGTACAGTGCGAACTTGGT
TCCCTCAACGGATCCCCAAGGCCATAGGGGCCTCGCCGTCAACCCCCCTA
CCTTCGTATACGACTGCTACTACAGTGCAGTGCCGCAAGCACATACCAGT
TTTGAAAGGAAGGGGCGGAATCAGTTTACCAGCGCACTTGACTATGGAGT
TTACTCAGGACAGGGTGTTTGCGGCAAGCCTTTGTTTACGGCCGATTTCA
GTTGCCTATATGTTTTCCCCAGCGGGTAGTCGCTTCTCGGTAGCTCCCGT
GTCAACAAGTGCGGTTCTCAGCCGGAGATTTACCAATACTTTTCGGGAAG
TTCGTGAGGGCAGTATGTGCAGGCCTGCCCCGGTGATGCACCCACGGCGC
ATGTGCCTACCCTCGGTGGCAGAAGCGGCGCGGGACTCGGGATGGGCGAG
ACGGCCGTTGCGTGGCAGGTGTATGGGGATGTCTGACCCGGGTGTGGCGT
CGTGGTGTCTGGGTAGCAGATTTTGATCGTCGTGATCGGCCATCGGACGC
GGAACGTGCGTGCCATGGTGTCGAGGTCAACGTTTTGCCCTCCACGGCCG
GGTGCTCTCAGTGCCGTGGTCCGGCGTTCAGGAGTGGCTGGCCGAAAATA
AATCCAGATTTGGTTTGTTGCACACACGTCCAGCAATCCAAATGTGTTAT
CGGGACGATGCTCGCGCTAAGCAAAAGTGCCGATAAACTACAGCTTACCG
CAAACACTCTCTAGTGATAGTGCCCAAGCATCGGAATTAGTGCCCCATTG
TCCTCTAGCACGACCATACGACAACGAGTCCACGAGCAGTAGCAGTGTGC
GTGACACGTGCGGGGGGGGGCAAAGGATCAACAAGAGACTGCGGCAAAGG
GTCAAGAGAGACTGCGACCCAGGCTGTCCTCACTCCACAGCCACCTCTTC
CCCCCGGGGGTACTATGACTACAGCCGGCAGAAATCTACTTGAGTACTTA
CATGGTGGTACAGTCGGCAGAAATCTACAGGTAGCTTGGCACCGTCCGCT
GGGGCTCGCCTTAACCCCAAGAGGACGACGGTACTTACTACCACTCTACA
CTACCACTAAGTATGAGTAGTACACTCGTGTCTCACCCCCACCCTATACA
ATGGTATGTGCTGTCGCCCTCTACTACTAGTACTGGTAGTACCGCCGTGC
TCGTAGGGTTGAGCTGCATCTGCACGGATGGGGCAACTCACAGCTGCACT
GACACCAAGCACACGGCCACATGTGGGCCAGCCGAAGTCAGCCAGAACGT
ACCTTCTCCCGAGCTCACCGCTAGCCGGCCGGCCCGCCTGTCCTCCGTGT
CTGTCTCCCTACCCCCCCCCCCCTCACCAAAGGACTTTGCGCTGGGCAAC
TTTGATGGCACGCCCATGGCCAAGCTGGAGGAGGCCAAGACCGAGGGTGA
TGGTGATTGTGAGGGCGTAGAAGATGGTGGTGATGCTAACAGCACAGCAG
TGTGCGGCTGTGGCGGTGGCGAGGGGGCGCCGTGTGTGTGCAGTCGTGGA
AGAGATGGAGGCAGCGGCGGCGGGGGGGGTACTGGTGGCGCCGCTGGGAC
GAAGGACGCCACCCCTGGCACGGCGGCGGCTGCAAGACTTCTGAATGAGG
CTAATGCCGAGGAGCCAGCCGCAAAGAAGTCTAGACCAGTGATAACGGAG
CTCTGATGATATGAATGAGTGAATCGACGCACAACCCGTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7439813..7443002-

>mRNA_S-ischiensis_contig1.1076.1 ID=mRNA_S-ischiensis_contig1.1076.1|Name=mRNA_S-ischiensis_contig1.1076.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1164bp|location=Sequence derived from alignment at S-ischiensis_contig1:7439813..7443002- (Schizocladia ischiensis KU_0333)
ATGCAGGCACCTCCTCGGAGCTCGCTCTTAGGGCGACTGGAAACATTTTT
GCCCAAACTGGCAGCCGCCAATAAGGAGGTGGAGGCGCTAGCCGCAGAAG
GCAAGCTGGAGACGATGGATGCCGGCCTGGCGCCGTGTGACGGTGGGGAG
GAGGTGCATGTCGATGACGACGAGGAGGAGGGCTCGGAGGATTTGGAGGA
GGAGGAGGGGGGGACTGCGTCCGACACGGAAGGAGCAACTGGCCGTGTTG
TTCAGCTTATGCAGGCACCTCCTCGGAGCTCGCTCTTAGGGCGACTGGAA
ACATTTTTGCCCAAACTGGCAGCCGCCAATAAGGAGGTGGAGGCGCTAGC
CGCAGAAGGCAAGCTGGAGACGATGGATGCCGGCCTGGCGCCGTGTGACG
GTGGGGAGGAGGTGCATGTCGATGACGACGAGGAGGAGGGCTCGGAGGAT
TTGGAGGAGGAGGAGGGGGGGACTGCGTCCGACACGGAAGGAGCAACTGG
CCGTGTTGTTCAGCTTGACTTTGCGCTGGGCAACTTTGATGGCACGCCCA
TGGCCAAGCTGGAGGAGGCCAAGACCGAGGGTGATGGTGATTGTGAGGGC
GTAGAAGATGGTGGTGATGCTAACAGCACAGCAGTGTGCGGCTGTGGCGG
TGGCGAGGGGGCGCCGTGTGTGTGCAGTCGTGGAAGAGATGGAGGCAGCG
GCGGCGGGGGGGGTACTGGTGGCGCCGCTGGGACGAAGGACGCCACCCCT
GGCACGGCGGCGGCTGCAAGACTTCTGAATGAGGCTAATGCCGAGGAGCC
AGCCGCAAAGAAGTCTAGACCAGTGATAACGGAGCTCTGAGACTTTGCGC
TGGGCAACTTTGATGGCACGCCCATGGCCAAGCTGGAGGAGGCCAAGACC
GAGGGTGATGGTGATTGTGAGGGCGTAGAAGATGGTGGTGATGCTAACAG
CACAGCAGTGTGCGGCTGTGGCGGTGGCGAGGGGGCGCCGTGTGTGTGCA
GTCGTGGAAGAGATGGAGGCAGCGGCGGCGGGGGGGGTACTGGTGGCGCC
GCTGGGACGAAGGACGCCACCCCTGGCACGGCGGCGGCTGCAAGACTTCT
GAATGAGGCTAATGCCGAGGAGCCAGCCGCAAAGAAGTCTAGACCAGTGA
TAACGGAGCTCTGA
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