mRNA_S-ischiensis_contig1.1074.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1074.1
Unique NamemRNA_S-ischiensis_contig1.1074.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1074.1 vs. uniprot
Match: A0A7S4D4Q2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4Q2_HETAK)

HSP 1 Score: 57.0 bits (136), Expect = 2.310e-5
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = -2 
Query:  224 QVSVASDDAAALRKLQQRAKLARDALFRRKKELQRLQTDLEEDNARLEGVQRQVRR 391
            +  ++S DA ALR L+++A+LA DALFR+KKELQR QTD EED ARLE V  Q  R
Sbjct:  706 KADMSSQDADALRALEEKARLAADALFRQKKELQRAQTDWEEDAARLEQVTEQAER 761
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D4Q2_HETAK2.310e-560.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7421773..7422698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size928
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.0288181-CDS-S-ischiensis_contig1:7421772..74222671622815376.0288181-CDS-S-ischiensis_contig1:7421772..7422267Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7421773..7422267 +
1695739665.5809546-CDS-S-ischiensis_contig1:7421772..74222671695739665.5809546-CDS-S-ischiensis_contig1:7421772..7422267Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7421773..7422267 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815376.0399654-UTR-S-ischiensis_contig1:7422267..74226981622815376.0399654-UTR-S-ischiensis_contig1:7422267..7422698Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7422268..7422698 +
1695739665.5953093-UTR-S-ischiensis_contig1:7422267..74226981695739665.5953093-UTR-S-ischiensis_contig1:7422267..7422698Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7422268..7422698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1074.1prot_S-ischiensis_contig1.1074.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7421773..7422267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1074.1

>prot_S-ischiensis_contig1.1074.1 ID=prot_S-ischiensis_contig1.1074.1|Name=mRNA_S-ischiensis_contig1.1074.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=165bp
ELDCTEVGEFAARVCARTHTCTHPPYPDNTYLSRPRFPTRDSKAEGGWTR
YTHRQASIPRFRGVPRSLGGIPYCGGAPGVAHPPGARCPLPGRSGGAAAP
SFGGRGRPGPALHAAGAYAMPPRRPRPRLPAPNRHVLCWLIEEGKSRSGA
VLKYCHSTSTLLPK*
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mRNA from alignment at S-ischiensis_contig1:7421773..7422698+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1074.1 ID=mRNA_S-ischiensis_contig1.1074.1|Name=mRNA_S-ischiensis_contig1.1074.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=926bp|location=Sequence derived from alignment at S-ischiensis_contig1:7421773..7422698+ (Schizocladia ischiensis KU_0333)
GAGCTCGATTGTACTGAAGTAGGTGAGTTTGCAGCACGCGTGTGCGCTCG
CACTCACACATGCACACACCCTCCTTACCCTGACAATACGTACTTAAGTA
GGCCACGCTTCCCCACGAGGGATTCGAAAGCGGAGGGGGGGTGGACACGA
TACACGCACAGGCAGGCATCTATTCCCCGCTTCAGAGGCGTGCCGCGAAG
TCTTGGCGGCATCCCCTACTGCGGCGGCGCACCTGGCGTTGCACACCCTC
CAGGCGCGCGTTGTCCTCTTCCAGGTCGGTCTGGAGGCGCTGCAGCTCCT
TCTTTCGGCGGAAGAGGGCGTCCCGGGCCAGCTTTGCACGCTGCTGGAGC
TTACGCAATGCCGCCGCGTCGTCCGAGGCCACGCTTACCTGCGCCAAATC
GGCATGTGCTTTGTTGGTTGATCGAGGAAGGGAAGAGTAGAAGCGGCGCA
GTTTTGAAGTACTGCCATAGCACAAGTACTCTACTTCCGAAGTAAAGCAC
ATATACTCTGTGAGAACTTCCGGAAGACTCTACAGTAGTACAGTACTCAC
AGTACTCACAGCAGCCGCAGACCATGGGAACGAATGAGGTGCGCGGTCCA
CGCCACCAACGACCTCAACAGTGGGCCTTTGTTTGCACGCAGCCGCGTTC
TGTCGTACAAGGTACTACGTAGCGAGCAAACACACGCCGGGTGCGGTCCA
CGTTGCGAACGACCCCAACGGTGGCGCTTCCCTAGCTCGCAGAGCAGAGG
CAATACTGCGGCACTGTAGCCCTGCCGTGGTGCAGGGTGTATGCTCGAAC
GAGTACGAGTATCTGCATGTGACACAACTTGCAGGCGGATAGGCCGAGCA
ATAGGTCGTCATCGTTGGAGGAGGAGGAGGAGGAGGATCTGGCACTGGAT
AACGTATATAATTGAAGCACATCCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7421773..7422698+

>mRNA_S-ischiensis_contig1.1074.1 ID=mRNA_S-ischiensis_contig1.1074.1|Name=mRNA_S-ischiensis_contig1.1074.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=990bp|location=Sequence derived from alignment at S-ischiensis_contig1:7421773..7422698+ (Schizocladia ischiensis KU_0333)
GAGCTCGATTGTACTGAAGTAGGTGAGTTTGCAGCACGCGTGTGCGCTCG
CACTCACACATGCACACACCCTCCTTACCCTGACAATACGTACTTAAGTA
GGCCACGCTTCCCCACGAGGGATTCGAAAGCGGAGGGGGGGTGGACACGA
TACACGCACAGGCAGGCATCTATTCCCCGCTTCAGAGGCGTGCCGCGAAG
TCTTGGCGGCATCCCCTACTGCGGCGGCGCACCTGGCGTTGCACACCCTC
CAGGCGCGCGTTGTCCTCTTCCAGGTCGGTCTGGAGGCGCTGCAGCTCCT
TCTTTCGGCGGAAGAGGGCGTCCCGGGCCAGCTTTGCACGCTGCTGGAGC
TTACGCAATGCCGCCGCGTCGTCCGAGGCCACGCTTACCTGCGCCAAATC
GGCATGTGCTTTGTTGGTTGATCGAGGAAGGGAAGAGTAGAAGCGGCGCA
GTTTTGAAGTACTGCCATAGCACAAGTACTCTACTTCCGAAGTAAGAGCT
CGATTGTACTGAAGTAGGTGAGTTTGCAGCACGCGTGTGCGCTCGCACTC
ACACATGCACACACCCTCCTTACCCTGACAATACGTACTTAAGTAGGCCA
CGCTTCCCCACGAGGGATTCGAAAGCGGAGGGGGGGTGGACACGATACAC
GCACAGGCAGGCATCTATTCCCCGCTTCAGAGGCGTGCCGCGAAGTCTTG
GCGGCATCCCCTACTGCGGCGGCGCACCTGGCGTTGCACACCCTCCAGGC
GCGCGTTGTCCTCTTCCAGGTCGGTCTGGAGGCGCTGCAGCTCCTTCTTT
CGGCGGAAGAGGGCGTCCCGGGCCAGCTTTGCACGCTGCTGGAGCTTACG
CAATGCCGCCGCGTCGTCCGAGGCCACGCTTACCTGCGCCAAATCGGCAT
GTGCTTTGTTGGTTGATCGAGGAAGGGAAGAGTAGAAGCGGCGCAGTTTT
GAAGTACTGCCATAGCACAAGTACTCTACTTCCGAAGTAA
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