mRNA_S-ischiensis_contig1.1071.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1071.1
Unique NamemRNA_S-ischiensis_contig1.1071.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7402563..7404758 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog2880.D7FW97
KEGG koko:K19327
KEGG TC1.A.17.1
EggNOG free text desc.intracellular chloride channel activity
EggNOG OGsKOG2513@1,KOG2513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04040
Hectar predicted targeting categoryother localisation
Exons3
Model size238
Cds size237
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1071.1prot_S-ischiensis_contig1.1071.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7402563..7404758 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815481.0675125-CDS-S-ischiensis_contig1:7402562..74026091622815481.0675125-CDS-S-ischiensis_contig1:7402562..7402609Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7402563..7402609 +
1695739726.3248093-CDS-S-ischiensis_contig1:7402562..74026091695739726.3248093-CDS-S-ischiensis_contig1:7402562..7402609Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7402563..7402609 +
1622815481.082175-CDS-S-ischiensis_contig1:7403252..74033401622815481.082175-CDS-S-ischiensis_contig1:7403252..7403340Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7403253..7403340 +
1695739726.3351936-CDS-S-ischiensis_contig1:7403252..74033401695739726.3351936-CDS-S-ischiensis_contig1:7403252..7403340Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7403253..7403340 +
1622815481.0933218-CDS-S-ischiensis_contig1:7404656..74047581622815481.0933218-CDS-S-ischiensis_contig1:7404656..7404758Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7404657..7404758 +
1695739726.3457694-CDS-S-ischiensis_contig1:7404656..74047581695739726.3457694-CDS-S-ischiensis_contig1:7404656..7404758Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7404657..7404758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1071.1

>prot_S-ischiensis_contig1.1071.1 ID=prot_S-ischiensis_contig1.1071.1|Name=mRNA_S-ischiensis_contig1.1071.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=79bp
MEAEAEHINLMKQDVDGLMAEFKADGAATRFRGYSTPEFFSPFEKGLLLR
SLVESVKGGWDDVLGEDAVYGVVHEYQLA
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mRNA from alignment at S-ischiensis_contig1:7402563..7404758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1071.1 ID=mRNA_S-ischiensis_contig1.1071.1|Name=mRNA_S-ischiensis_contig1.1071.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2196bp|location=Sequence derived from alignment at S-ischiensis_contig1:7402563..7404758+ (Schizocladia ischiensis KU_0333)
ATGGAAGCTGAAGCGGAGCATATCAACTTGATGAAGCAGGACGTCGAGTG
AGTGGCAGCAACTCGCTCGGGCCGCACTTCCTCGAACCCCCGATGATGTC
CATCAGTGATGCACGATGACAGTGTTTTTTGCACCACGGGCGGTGTTTCG
GCTATGGTCCATGTGCCCAGACCCTGTTATTTCTGTGGAAATCAAACATG
GAGTAGCCACATCACGCTTGCTCTAAGGACAAGCCTCGAGATCAGTGACG
CTGTCTCATGTGCGCGTGCATGCGTGTGTGTGTGAGCCCGTGCACGAACG
CAGCCTCCTGTCGATCCGGACGTCTTTTTCTTCGAATCAATCAGCCCACA
AAATGTTCTCGCTTGCTTTTTAGTATGCCCGTCCAAATTTCTGCCAACAG
TTCTTGTTGACTTTTGTGCCAGATGCGCGCGCCTTCCAGATACACTCCGA
AGAACCCGCCACAGCCGCATTGGATACCGGATACTTGCATTAGCAAGCGC
CCCTTAAACAGCTGGACCTCGAGCTTCTCGTACTTGATCTTTTTATGCAA
TAGTCTCTCTCAGTGGAATGGCAGGACAAGCGCTCGTGTCTACCTCAGTG
CATTCCACCGTCTCTTGCAGTTATGGAATACAAACATAGTCCGTTTCACG
ACCACCTCCCCCCCCGCCCTTACGATCCCCCGCCCCGCAGTGGCCTCATG
GCAGAGTTCAAGGCGGACGGGGCTGCCACCCGCTTCCGTGGGTACAGCAC
ACCCGAGTTTTTCTCCCCCTTTGAGAAGGTGTGTGTGTGTACTGTGCTTG
TGCATGTACTCGTAGAGTACTCGTACAGTACTTGGAAGTACCTTGGTACC
TTTCGGCACGATGATTGCGCGTGCACCACGGCCGGCAGGCAGGCAGTAGG
CCGTCCGTCCGCCAGCCAGCCCCTCAGGGAACACCCTTGTCGGGGTTCCC
TCCGAGACATGGCGCAGAGGGAAGCAGTAAAGGACCAGTACGTGTGTGCG
AATTACCGTAGCTCCACAGCTGTACAGTAAGCGTGATGCTCTGCAAGTAC
TTGCAGGCATAAGGACAAGGACGATGGGAAGCCTTGTGATTGCAGTAGCT
TAGCTCTGCTTTGGCGCTTTGTCGTGGGCTGAACAAACGAAGCCCGGCGG
CAAGGCAAGGATTCGCGGTTGTTGCTGCCTGGCCACCGACCAGCCTCCGT
CAGGAGCACAGCCCCAAGGCTGTTCATCGCGCGGCCGGAGCCATGCCCGG
TTGTCGTTCGCCGGTCAGAGTCTTGCGTGAACTGAACGCGTGCTCCCCAC
GATGGGGCCGCCCCCGTTTTTTTGCTTTTTGCTAGCGGTGCACTGCTGTT
GCAGCTTGGACTACTATATTGTACTGAGTGACGTGGAACAGTACACTACC
GCGACAGGTACTTCAAAGTGCTAAGTACTGTGCGGCAGTACAGCACAGTA
GTGTACGAGTAGAACTTGTAGTCCAGTAGTACGTTGAAGCAACTCCCGAG
GTCACTTGTGTGCCCTTTCTACAGTTCAGTGCAAGTTACCAGTGATGCAG
CACTTAGACGACAACCGTAGTGCACTTCTAAGCACTTGAGAAGTACTTAC
ACAAGTACCATATACTGTATATCCTATGTACTTTGAAGTACTCACGTTGT
GCTTGCTGTAGTCTCGAGACCACTGACCACGTCGCTCGACTGCCCCCCTC
CCCGCCCCTGGCAGAGCCAGGTTGGGAGGTGGAGGCACCCCTTCGGAGGG
GTGGCCATTTCCATTGCCCCCCCCGTCATCCAGATATCCCTGCAATGCCT
CTGGAGGTACTCGTAGTTGCTTCGAAGAACTCACTATTGTGAGCCCCAAT
TGTGTTCGCTGGAGTACAGTGTAGTCCGTGGTACCCGTGTCCCCGAAGGG
TGTCAAGTTGCAAGTACCTCCAGTAGCATTGCAGGCAGTTGCTGCCGGGG
TCCCTGGTGTATGGCTCTTGACAACCCTGAGGGGGCAATTTCACTGATCA
CGCAAACTGCAGGCTAGTGGTGTACGGCGAGCCACTGTACCGCCGTCGTC
TTCAAAGGCTCAGTTATCAGTCACCACCTCCCCCCCCTGGGCAGGGGTTG
CTGCTGCGGTCGCTGGTGGAGTCTGTGAAGGGCGGCTGGGACGACGTTCT
GGGCGAGGATGCAGTGTACGGCGTGGTGCACGAGTACCAGCTGGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7402563..7404758+

>mRNA_S-ischiensis_contig1.1071.1 ID=mRNA_S-ischiensis_contig1.1071.1|Name=mRNA_S-ischiensis_contig1.1071.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=474bp|location=Sequence derived from alignment at S-ischiensis_contig1:7402563..7404758+ (Schizocladia ischiensis KU_0333)
ATGGAAGCTGAAGCGGAGCATATCAACTTGATGAAGCAGGACGTCGAATG
GAAGCTGAAGCGGAGCATATCAACTTGATGAAGCAGGACGTCGATGGCCT
CATGGCAGAGTTCAAGGCGGACGGGGCTGCCACCCGCTTCCGTGGGTACA
GCACACCCGAGTTTTTCTCCCCCTTTGAGAAGTGGCCTCATGGCAGAGTT
CAAGGCGGACGGGGCTGCCACCCGCTTCCGTGGGTACAGCACACCCGAGT
TTTTCTCCCCCTTTGAGAAGGGGTTGCTGCTGCGGTCGCTGGTGGAGTCT
GTGAAGGGCGGCTGGGACGACGTTCTGGGCGAGGATGCAGTGTACGGCGT
GGTGCACGAGTACCAGCTGGCTGGGTTGCTGCTGCGGTCGCTGGTGGAGT
CTGTGAAGGGCGGCTGGGACGACGTTCTGGGCGAGGATGCAGTGTACGGC
GTGGTGCACGAGTACCAGCTGGCT
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