mRNA_S-ischiensis_contig1.1067.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1067.1
Unique NamemRNA_S-ischiensis_contig1.1067.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7390996..7391406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.9338977-CDS-S-ischiensis_contig1:7390995..73914061622815375.9338977-CDS-S-ischiensis_contig1:7390995..7391406Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7390996..7391406 +
1695739665.5417964-CDS-S-ischiensis_contig1:7390995..73914061695739665.5417964-CDS-S-ischiensis_contig1:7390995..7391406Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7390996..7391406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1067.1prot_S-ischiensis_contig1.1067.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7390996..7391406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1067.1

>prot_S-ischiensis_contig1.1067.1 ID=prot_S-ischiensis_contig1.1067.1|Name=mRNA_S-ischiensis_contig1.1067.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=137bp
QDWDRDRGRDRDRGGMFDYHSGRRAPYPRGQGPNYGALADKRALNSHRPA
PRPSARSRSRSRSRSVSRDGRGAGGGGRDWDRDRDRGRGRDSRSRSPPRK
SRNSRSRSRSRSRSASPPGARGGDGKGSREGERGSRE
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mRNA from alignment at S-ischiensis_contig1:7390996..7391406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1067.1 ID=mRNA_S-ischiensis_contig1.1067.1|Name=mRNA_S-ischiensis_contig1.1067.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=411bp|location=Sequence derived from alignment at S-ischiensis_contig1:7390996..7391406+ (Schizocladia ischiensis KU_0333)
CAGGACTGGGACCGGGACAGGGGCAGGGATCGGGATCGGGGTGGCATGTT
TGACTACCACTCGGGCCGCCGGGCCCCTTACCCCAGGGGCCAGGGCCCCA
ACTACGGCGCCCTGGCGGACAAACGGGCCCTGAACTCCCACAGGCCAGCC
CCACGACCCTCCGCCCGCAGCCGCAGCCGTAGCCGCAGCCGCAGTGTCAG
CCGGGATGGGAGGGGCGCAGGCGGTGGCGGCCGGGACTGGGACCGGGACC
GGGACCGGGGCCGGGGCCGGGACTCACGCAGCCGATCACCCCCCCGCAAG
AGCCGCAATTCTCGGTCGCGGTCCCGGTCCCGGTCCCGGTCTGCCAGCCC
CCCGGGTGCCAGAGGCGGAGACGGCAAGGGGTCTCGTGAGGGGGAGCGCG
GCTCGCGGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7390996..7391406+

>mRNA_S-ischiensis_contig1.1067.1 ID=mRNA_S-ischiensis_contig1.1067.1|Name=mRNA_S-ischiensis_contig1.1067.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=822bp|location=Sequence derived from alignment at S-ischiensis_contig1:7390996..7391406+ (Schizocladia ischiensis KU_0333)
CAGGACTGGGACCGGGACAGGGGCAGGGATCGGGATCGGGGTGGCATGTT
TGACTACCACTCGGGCCGCCGGGCCCCTTACCCCAGGGGCCAGGGCCCCA
ACTACGGCGCCCTGGCGGACAAACGGGCCCTGAACTCCCACAGGCCAGCC
CCACGACCCTCCGCCCGCAGCCGCAGCCGTAGCCGCAGCCGCAGTGTCAG
CCGGGATGGGAGGGGCGCAGGCGGTGGCGGCCGGGACTGGGACCGGGACC
GGGACCGGGGCCGGGGCCGGGACTCACGCAGCCGATCACCCCCCCGCAAG
AGCCGCAATTCTCGGTCGCGGTCCCGGTCCCGGTCCCGGTCTGCCAGCCC
CCCGGGTGCCAGAGGCGGAGACGGCAAGGGGTCTCGTGAGGGGGAGCGCG
GCTCGCGGGAGCAGGACTGGGACCGGGACAGGGGCAGGGATCGGGATCGG
GGTGGCATGTTTGACTACCACTCGGGCCGCCGGGCCCCTTACCCCAGGGG
CCAGGGCCCCAACTACGGCGCCCTGGCGGACAAACGGGCCCTGAACTCCC
ACAGGCCAGCCCCACGACCCTCCGCCCGCAGCCGCAGCCGTAGCCGCAGC
CGCAGTGTCAGCCGGGATGGGAGGGGCGCAGGCGGTGGCGGCCGGGACTG
GGACCGGGACCGGGACCGGGGCCGGGGCCGGGACTCACGCAGCCGATCAC
CCCCCCGCAAGAGCCGCAATTCTCGGTCGCGGTCCCGGTCCCGGTCCCGG
TCTGCCAGCCCCCCGGGTGCCAGAGGCGGAGACGGCAAGGGGTCTCGTGA
GGGGGAGCGCGGCTCGCGGGAG
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