mRNA_S-ischiensis_contig1.1066.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1066.1
Unique NamemRNA_S-ischiensis_contig1.1066.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7387440..7388652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size1213
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1066.1prot_S-ischiensis_contig1.1066.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7387650..7388303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.861028-UTR-S-ischiensis_contig1:7387439..73876491622815375.861028-UTR-S-ischiensis_contig1:7387439..7387649Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7387440..7387649 +
1695739665.509899-UTR-S-ischiensis_contig1:7387439..73876491695739665.509899-UTR-S-ischiensis_contig1:7387439..7387649Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7387440..7387649 +
1622815375.8917878-UTR-S-ischiensis_contig1:7388303..73886521622815375.8917878-UTR-S-ischiensis_contig1:7388303..7388652Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7388304..7388652 +
1695739665.530588-UTR-S-ischiensis_contig1:7388303..73886521695739665.530588-UTR-S-ischiensis_contig1:7388303..7388652Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7388304..7388652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.8771558-CDS-S-ischiensis_contig1:7387649..73883031622815375.8771558-CDS-S-ischiensis_contig1:7387649..7388303Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7387650..7388303 +
1695739665.5190182-CDS-S-ischiensis_contig1:7387649..73883031695739665.5190182-CDS-S-ischiensis_contig1:7387649..7388303Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7387650..7388303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1066.1

>prot_S-ischiensis_contig1.1066.1 ID=prot_S-ischiensis_contig1.1066.1|Name=mRNA_S-ischiensis_contig1.1066.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=218bp
MGPTAAARTFSASSWVRRISCEALVGWRCWGGDRAGPMGGFSAANGAMLA
TAGSGPAVAAAPPPEAAGAATTSCSPPHGIPATAAAKRACTSAATRPKRS
CMARVLAAEAVPLATPSPASFTRPASPSLAGVTAPSMKRPVPMEDAVGGA
KLSGLMRPAGGAEWGRADAAETPARAAKASSEIPSSLLAPTWFMRMIASV
SVTKTLRDARPSRIWLG*
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mRNA from alignment at S-ischiensis_contig1:7387440..7388652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1066.1 ID=mRNA_S-ischiensis_contig1.1066.1|Name=mRNA_S-ischiensis_contig1.1066.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1213bp|location=Sequence derived from alignment at S-ischiensis_contig1:7387440..7388652+ (Schizocladia ischiensis KU_0333)
CCAGGCGCCACACGACTGCCTCCTCCCTCTCCCCCTCCCGCTCTTCTGCC
TCCCGGTGGATGCATGTGAGGCATCTGTTGGGCCGCTGCTTCCGCCGTTG
GGAGAGCCTCGCTGCCGCTCGACCAGACATGGGGGGGTGGCTCGTGCCCG
CCGGCCACGACTCCCGCCCTCGCCCCGGCCATGACCCCTTGAGTCACTCT
GGGAGGCGTGATGGGCCCAACCGCGGCCGCACGTACGTTCAGCGCTTCGA
GCTGGGTGCGTAGGATTTCCTGTGAGGCCTTGGTCGGGTGGCGTTGCTGG
GGTGGCGACCGCGCCGGGCCCATGGGCGGGTTCTCCGCCGCCAATGGCGC
GATGCTCGCCACGGCGGGTTCCGGGCCCGCAGTCGCGGCAGCACCACCAC
CGGAAGCGGCGGGGGCAGCCACAACATCATGCTCTCCACCCCACGGAATC
CCAGCCACTGCCGCGGCCAAGCGTGCTTGCACATCTGCGGCCACCCGCCC
AAAACGATCTTGCATGGCCAGGGTGCTTGCGGCGGAGGCGGTACCACTGG
CGACACCTTCACCGGCCTCGTTTACACGTCCAGCGTCCCCGTCTCTAGCG
GGGGTGACCGCTCCATCAATGAAGCGACCCGTGCCCATGGAGGATGCAGT
GGGTGGGGCCAAGCTGTCCGGGCTGATGCGTCCGGCCGGGGGCGCGGAGT
GGGGGCGTGCGGATGCTGCCGAGACCCCGGCCAGGGCAGCAAAGGCCTCA
AGCGAGATACCTTCATCCTTGCTGGCGCCCACATGGTTCATGAGAATGAT
CGCCTCAGTGTCAGTCACGAAGACGCTCAGGGACGCAAGGCCTTCTCGCA
TTTGGCTCGGATAGACGCGGCCCCGCACTGGGCGCAGCTGGCTAAATAGG
TCTTCCACGGTGAGCTTCTCTTCGTTGGCCTCCTCTCTCAGCTCTTCCAG
AAGGTCCTTGAGCTCCTCGATCGGGCGAGGCCCATCGCTACTGTCTGTAG
CCGGCGGGTTGCCTGCAAGGGTCCCAAACCTCACCATATCTTCTTCGTCG
GTCGCCGCCATGGGATGCTCGATTACCAACGGTGGCGGGAGAGGGTATTA
CCTAGACTCCAAGCCAAGGGCCAGTATGACCCTGGCTTGCCCTGCCGTGG
TGCTGCGACGGGACGCCGTGCCGGCCCTCTCCCCGCTGGCGGTTTGTGCT
TCGGTACCTCTGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7387440..7388652+

>mRNA_S-ischiensis_contig1.1066.1 ID=mRNA_S-ischiensis_contig1.1066.1|Name=mRNA_S-ischiensis_contig1.1066.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1308bp|location=Sequence derived from alignment at S-ischiensis_contig1:7387440..7388652+ (Schizocladia ischiensis KU_0333)
ATGGGCCCAACCGCGGCCGCACGTACGTTCAGCGCTTCGAGCTGGGTGCG
TAGGATTTCCTGTGAGGCCTTGGTCGGGTGGCGTTGCTGGGGTGGCGACC
GCGCCGGGCCCATGGGCGGGTTCTCCGCCGCCAATGGCGCGATGCTCGCC
ACGGCGGGTTCCGGGCCCGCAGTCGCGGCAGCACCACCACCGGAAGCGGC
GGGGGCAGCCACAACATCATGCTCTCCACCCCACGGAATCCCAGCCACTG
CCGCGGCCAAGCGTGCTTGCACATCTGCGGCCACCCGCCCAAAACGATCT
TGCATGGCCAGGGTGCTTGCGGCGGAGGCGGTACCACTGGCGACACCTTC
ACCGGCCTCGTTTACACGTCCAGCGTCCCCGTCTCTAGCGGGGGTGACCG
CTCCATCAATGAAGCGACCCGTGCCCATGGAGGATGCAGTGGGTGGGGCC
AAGCTGTCCGGGCTGATGCGTCCGGCCGGGGGCGCGGAGTGGGGGCGTGC
GGATGCTGCCGAGACCCCGGCCAGGGCAGCAAAGGCCTCAAGCGAGATAC
CTTCATCCTTGCTGGCGCCCACATGGTTCATGAGAATGATCGCCTCAGTG
TCAGTCACGAAGACGCTCAGGGACGCAAGGCCTTCTCGCATTTGGCTCGG
ATAGATGGGCCCAACCGCGGCCGCACGTACGTTCAGCGCTTCGAGCTGGG
TGCGTAGGATTTCCTGTGAGGCCTTGGTCGGGTGGCGTTGCTGGGGTGGC
GACCGCGCCGGGCCCATGGGCGGGTTCTCCGCCGCCAATGGCGCGATGCT
CGCCACGGCGGGTTCCGGGCCCGCAGTCGCGGCAGCACCACCACCGGAAG
CGGCGGGGGCAGCCACAACATCATGCTCTCCACCCCACGGAATCCCAGCC
ACTGCCGCGGCCAAGCGTGCTTGCACATCTGCGGCCACCCGCCCAAAACG
ATCTTGCATGGCCAGGGTGCTTGCGGCGGAGGCGGTACCACTGGCGACAC
CTTCACCGGCCTCGTTTACACGTCCAGCGTCCCCGTCTCTAGCGGGGGTG
ACCGCTCCATCAATGAAGCGACCCGTGCCCATGGAGGATGCAGTGGGTGG
GGCCAAGCTGTCCGGGCTGATGCGTCCGGCCGGGGGCGCGGAGTGGGGGC
GTGCGGATGCTGCCGAGACCCCGGCCAGGGCAGCAAAGGCCTCAAGCGAG
ATACCTTCATCCTTGCTGGCGCCCACATGGTTCATGAGAATGATCGCCTC
AGTGTCAGTCACGAAGACGCTCAGGGACGCAAGGCCTTCTCGCATTTGGC
TCGGATAG
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