mRNA_S-ischiensis_contig1.1065.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1065.1
Unique NamemRNA_S-ischiensis_contig1.1065.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7385466..7387155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003930.1
Exons3
Model size580
Cds size579
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1065.1prot_S-ischiensis_contig1.1065.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7385467..7387155 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815359.3878222-CDS-S-ischiensis_contig1:7385466..73856951622815359.3878222-CDS-S-ischiensis_contig1:7385466..7385695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7385467..7385695 -
1695739659.163812-CDS-S-ischiensis_contig1:7385466..73856951695739659.163812-CDS-S-ischiensis_contig1:7385466..7385695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7385467..7385695 -
1622815359.3998692-CDS-S-ischiensis_contig1:7386090..73862841622815359.3998692-CDS-S-ischiensis_contig1:7386090..7386284Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7386091..7386284 -
1695739659.1743543-CDS-S-ischiensis_contig1:7386090..73862841695739659.1743543-CDS-S-ischiensis_contig1:7386090..7386284Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7386091..7386284 -
1622815359.417644-CDS-S-ischiensis_contig1:7386999..73871551622815359.417644-CDS-S-ischiensis_contig1:7386999..7387155Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7387000..7387155 -
1695739659.1826262-CDS-S-ischiensis_contig1:7386999..73871551695739659.1826262-CDS-S-ischiensis_contig1:7386999..7387155Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7387000..7387155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1065.1

>prot_S-ischiensis_contig1.1065.1 ID=prot_S-ischiensis_contig1.1065.1|Name=mRNA_S-ischiensis_contig1.1065.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=193bp
GRVGGGGASAVATAASSIQRAARRWREHTIAGKSMRIAELEQRVAACNFR
EKLLETQLEGARADLAAAEKRAKDAVAQAQRAGEESARRLRKLLGLERTR
GAAERAALEGRLERLKRSSAAQAAKRQREASAYLQRRIKEITHARDARQQ
RADTKRARASSSSPTPPRGARSGGGGGGGGEPMRRSCPSLAAT
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mRNA from alignment at S-ischiensis_contig1:7385466..7387155-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1065.1 ID=mRNA_S-ischiensis_contig1.1065.1|Name=mRNA_S-ischiensis_contig1.1065.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1690bp|location=Sequence derived from alignment at S-ischiensis_contig1:7385466..7387155- (Schizocladia ischiensis KU_0333)
GGACGAGTTGGAGGAGGTGGAGCATCGGCAGTAGCAACTGCAGCCTCGTC
CATCCAGCGAGCTGCCCGCCGGTGGCGTGAGCACACCATTGCAGGAAAGT
CAATGCGGATAGCGGAGCTGGAACAAAGGGTCGCTGCGTGCAATTTCCGG
GAGAAGGTGAGTGTGGCTGCCGACAGTGGCCGAGCGCGACCAGCGGCGGG
CTTTATTTTTCCATCTGTGTCCCATGCTGGCAGCGGAGGATGGAGATGCT
TGATTCAAGCCAAGTGTTGTGCCCCACCCTGACTGCGTGGCGATACGAAG
TACACAGAGAGATACGCACACGCGCAGGCGCACATGCATAGGCACAGACA
CACACACACACGCACACACACACACATCACATCACAGGGGTACTTGTACA
GCTAAGAACCACCGCATCTGCTACATGACCTCAGGACACTTGCGACCTCC
TGCCCTCTCTCAGTCCACTCCCGGGCGGCTGCCCACCCGCACACTGCAGG
CCTCTTGGCACCCCCTCGCCGTGTTTGCTATTTCCCATCGCTCTGTTCAG
GGCACGCAATAGTATCATAGTCTGGTTTTACTGCAACACTGCGACTGCAC
GACAGCGGTGCTTGCCACTCGCCAAAGTAAAGTATTGCAATCGGTATGTA
ATATGCAGCGTGCTGTATACACCGTCTGAGATTTCAACATTTGATTGCTT
GGTGAGACAAGCAGCACACCGGAGCGTTGCCCATACCATGCAATCAATCC
TGCGCTCTAGCGCGTTTCAAAGGAAGAGAGGAAATGTCTAGGGGACCCTA
AAAGACACACACGAACAACACTCAACCTTAATTGCCGCACCGGACGGCCG
GGCCGGGCACCGCCAACCCAGTTGCTGGAGACCCAGCTCGAGGGCGCCAG
GGCAGACCTGGCAGCCGCAGAGAAGCGGGCAAAGGACGCCGTGGCGCAGG
CCCAGAGGGCGGGGGAGGAGTCGGCCCGGCGCCTGCGCAAGCTACTGGGG
TTGGAGCGGACACGGGGGGCGGCGGAGCGCGCGGCGCTCGAGGGCCGTCT
CGAACGACTAAAGCGGTGCGAGTCCGATGAGTGGCGTACTGACACCCGGG
ACTTGCGGGATGCTGATGTGTTGTGGCGGCGCTTTGGCTTACTTGGAAGT
ATTGAGCTCAGAGCAGGCTGTGGCGCGTGACTGGTCGAATGGGATCTGGG
GCTGTGGCAAGCACAACACGGGGGATGTGTGTGCACGCGTACACCTTCAC
AATACTGTCGTAGGTACTTCAAAACAGTATGCTCATGCTCGAGTATACTC
CTTAATCGAGGAACTGACATACCAAATATCCGGTATGCACCACAAGCACA
TCTTGACGTACACATCCTTTATGAGTAGGTATGCTTGTATGAGCACCCCG
CATCCCCAAATTCATCGCAGCGGGGCTGATCACACCTTACCCACCGCCAA
CACCCCCCAGGTCCTCCGCGGCCCAGGCGGCCAAGCGCCAGCGCGAGGCC
TCCGCCTACCTCCAGCGACGCATAAAGGAGATCACACACGCCCGGGATGC
CCGGCAACAACGCGCCGACACCAAACGGGCCAGGGCGTCCTCCTCCTCGC
CCACACCCCCTCGCGGTGCCCGCAGCGGCGGCGGCGGCGGCGGCGGTGGG
GAGCCCATGCGGCGGTCGTGCCCCAGCCTGGCTGCCACGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7385466..7387155-

>mRNA_S-ischiensis_contig1.1065.1 ID=mRNA_S-ischiensis_contig1.1065.1|Name=mRNA_S-ischiensis_contig1.1065.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1158bp|location=Sequence derived from alignment at S-ischiensis_contig1:7385466..7387155- (Schizocladia ischiensis KU_0333)
GGACGAGTTGGAGGAGGTGGAGCATCGGCAGTAGCAACTGCAGCCTCGTC
CATCCAGCGAGCTGCCCGCCGGTGGCGTGAGCACACCATTGCAGGAAAGT
CAATGCGGATAGCGGAGCTGGAACAAAGGGTCGCTGCGTGCAATTTCCGG
GAGAAGGGACGAGTTGGAGGAGGTGGAGCATCGGCAGTAGCAACTGCAGC
CTCGTCCATCCAGCGAGCTGCCCGCCGGTGGCGTGAGCACACCATTGCAG
GAAAGTCAATGCGGATAGCGGAGCTGGAACAAAGGGTCGCTGCGTGCAAT
TTCCGGGAGAAGTTGCTGGAGACCCAGCTCGAGGGCGCCAGGGCAGACCT
GGCAGCCGCAGAGAAGCGGGCAAAGGACGCCGTGGCGCAGGCCCAGAGGG
CGGGGGAGGAGTCGGCCCGGCGCCTGCGCAAGCTACTGGGGTTGGAGCGG
ACACGGGGGGCGGCGGAGCGCGCGGCGCTCGAGGGCCGTCTCGAACGACT
AAAGCGTTGCTGGAGACCCAGCTCGAGGGCGCCAGGGCAGACCTGGCAGC
CGCAGAGAAGCGGGCAAAGGACGCCGTGGCGCAGGCCCAGAGGGCGGGGG
AGGAGTCGGCCCGGCGCCTGCGCAAGCTACTGGGGTTGGAGCGGACACGG
GGGGCGGCGGAGCGCGCGGCGCTCGAGGGCCGTCTCGAACGACTAAAGCG
GTCCTCCGCGGCCCAGGCGGCCAAGCGCCAGCGCGAGGCCTCCGCCTACC
TCCAGCGACGCATAAAGGAGATCACACACGCCCGGGATGCCCGGCAACAA
CGCGCCGACACCAAACGGGCCAGGGCGTCCTCCTCCTCGCCCACACCCCC
TCGCGGTGCCCGCAGCGGCGGCGGCGGCGGCGGCGGTGGGGAGCCCATGC
GGCGGTCGTGCCCCAGCCTGGCTGCCACGGTCCTCCGCGGCCCAGGCGGC
CAAGCGCCAGCGCGAGGCCTCCGCCTACCTCCAGCGACGCATAAAGGAGA
TCACACACGCCCGGGATGCCCGGCAACAACGCGCCGACACCAAACGGGCC
AGGGCGTCCTCCTCCTCGCCCACACCCCCTCGCGGTGCCCGCAGCGGCGG
CGGCGGCGGCGGCGGTGGGGAGCCCATGCGGCGGTCGTGCCCCAGCCTGG
CTGCCACG
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