|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | zinc finger, FYVE domain containing 19, isoform CRA_g |
| Ec32 ortholog | Ec-01_002660.1 |
| Exons | 3 |
| Model size | 740 |
| Cds size | 708 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815359.2977164-UTR-S-ischiensis_contig1:7345364..7345395 | 1622815359.2977164-UTR-S-ischiensis_contig1:7345364..7345395 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 7345365..7345395 + |
| 1695739659.130503-UTR-S-ischiensis_contig1:7345364..7345395 | 1695739659.130503-UTR-S-ischiensis_contig1:7345364..7345395 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 7345365..7345395 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815359.312903-CDS-S-ischiensis_contig1:7345395..7345650 | 1622815359.312903-CDS-S-ischiensis_contig1:7345395..7345650 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7345396..7345650 + |
| 1695739659.138724-CDS-S-ischiensis_contig1:7345395..7345650 | 1695739659.138724-CDS-S-ischiensis_contig1:7345395..7345650 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7345396..7345650 + |
| 1622815359.3268156-CDS-S-ischiensis_contig1:7345978..7346242 | 1622815359.3268156-CDS-S-ischiensis_contig1:7345978..7346242 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7345979..7346242 + |
| 1695739659.146961-CDS-S-ischiensis_contig1:7345978..7346242 | 1695739659.146961-CDS-S-ischiensis_contig1:7345978..7346242 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7345979..7346242 + |
| 1622815359.3409054-CDS-S-ischiensis_contig1:7347211..7347400 | 1622815359.3409054-CDS-S-ischiensis_contig1:7347211..7347400 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7347212..7347400 + |
| 1695739659.1553152-CDS-S-ischiensis_contig1:7347211..7347400 | 1695739659.1553152-CDS-S-ischiensis_contig1:7347211..7347400 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7347212..7347400 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1061.1 >prot_S-ischiensis_contig1.1061.1 ID=prot_S-ischiensis_contig1.1061.1|Name=mRNA_S-ischiensis_contig1.1061.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=236bp
MRGNRPDDVSDSSTPAIDDLQARMENLARDTLPTEAELQQKMDKLTAPER
PAASPQELADRFEKLAGRTLAVHPSQPAADYSVPECFDEDATDLDDLLAD
PVDATGGDEHEDALKSRLGHLEAKAARVAVNEGHMAGFNDLSAGVESAVQ
AFLDGSDGGGLGSTGDVDRLLSMAAEEVRLETGVPTAPRLAQHAPAGHYD
GGGDDDQLSRIMQQATDEALLSLSDPTPAPRRGASG back to topmRNA from alignment at S-ischiensis_contig1:7345365..7347400+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig1.1061.1 ID=mRNA_S-ischiensis_contig1.1061.1|Name=mRNA_S-ischiensis_contig1.1061.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2036bp|location=Sequence derived from alignment at S-ischiensis_contig1:7345365..7347400+ (Schizocladia ischiensis KU_0333)
CTAAGTAGAAGGTACCCGAGACAGAGGGCTGATGCGCGGAAATAGACCAG
ATGATGTCTCTGACAGCAGCACGCCAGCGATTGATGACCTGCAAGCCAGG
ATGGAAAATCTCGCGCGAGACACTCTCCCAACAGAGGCAGAGTTGCAACA
GAAAATGGATAAACTGACCGCACCAGAACGCCCAGCGGCCTCGCCTCAAG
AACTGGCCGACCGTTTCGAAAAGTTGGCGGGGAGAACCCTTGCTGTCCAT
CCGTCTCAGCCCGCAGCAGACTACAGTGTCCCTGAGGTGTGTATTTTTGG
CCGTGGGCACGCAGCAACACCTACTGGGAGGAACACGTTGCACACAATGC
CAGTGCTCGAGGGCGGTATCCTTGGCAGAGCGTACGCATTGTACGCGCTG
CAGCTGCAGCTCTGTACCATGCTTGTCCAGATCCGACGTCCTTGGGGTCC
TCTCGCACTCGCAGGGCCTCTCCCTGCCGACTGCATTCTGCTTAACGGTG
GGCAAAGGTATCTTTGGCCTTACTCTCATCTCCCTTGTTGTCACGGTTCC
CTTTGGCGCCCATGGCGGCGGCTTGTGGCCTTGGGGGACTGCTGCCACGG
CACATCTTCCCTAGTGCTTTGATGAGGATGCCACGGACCTGGATGATCTC
CTGGCGGATCCTGTGGATGCCACGGGTGGGGATGAGCACGAGGATGCGTT
GAAGTCGCGCCTGGGCCACCTGGAAGCCAAGGCAGCGCGTGTCGCAGTAA
ATGAGGGCCACATGGCAGGCTTCAACGACTTGTCAGCAGGGGTTGAGTCA
GCCGTGCAGGCGTTTCTGGATGGCTCGGACGGTGGTGGGCTTGGCTCGAC
GGGCGATGTAGATAGACTCCTGAGCATGGTGAGTCCCTCCCTGGCGATGT
TGTTGTACCTGTACTCGTATGTGTGCTAGTTGTACTGGTTCTAAAATTAT
TTTTACGAGGTAGGTACTGTAGGTCGCTGTGTATTTGCCAAAGCCGTGAA
TCAAGCCTTTGCCATTTTGGCCGCAACTGAGGAAAATTTGCACTAGTTGT
ACGTAAACGCTGTCCTACCGTAATCTTCGGAGAAAGTTTGCGTGCAAAAC
GCACGACACGGACATCATGTTTACTATCGAGTACAGCAAGTTCCAATTTC
TCCCGGGTGTTTGTTCAGCGCTGGTCGGGCCCCGAGTTTGATACACCTTC
CCAACTCCCGAGGGCGAAATGCCTCGGACGGGCAAAAGTGTCGACGCAAA
GCGGGCGGCAAGAACAAGTGCAAACATTTTCGATTGGCTCAAAAGTGAAG
GTGGTGACGTATTCGCTCGAAAAGGTCGATGGGGCACGGGGCAAGGATGG
AACCCGCGGTCCAACGCGCACAGCAGCGATGTGGCCGGGGCTGCTCACCT
GGCAGAAAGTCGAGGCGTGGGTGAATAGGCTGCGGGGGTGGGAGGCCGAA
ATCGCCAAAACAAGGGCACAGGGAAGAACACATCTCGTCAACAAGGGGCG
AGCTGCTGCCACAGCGCATATCGAGGGCGTCCTCGTGACCCACCGGTATA
TGTTAGCAGAAAATGGGAGGGGGGTGCAGAACCTCTAAGGCGGTGCAAAA
CCTGTGCTCATATTTATGGAAGCACATGCCTTGAAGCAACTATTTTTTTG
CCGCAAAAGGTCAACGACTGCGAAAGGACAACGGCACGCAAACCTTCTCT
GACGGTTACGGTACTTTGGAGCTAGGACTTTCCTATAGGGACTACGGCAA
GCACCACGTCACTACCTATATACTTCAAAGTATACAGCTCTTTGCCGTAC
ATGATGCCCGCCCGCCGTTCACTCGCCCATGCACTCGCTCCGCACAGGCG
GCCGAGGAGGTCCGGTTGGAAACTGGCGTGCCCACGGCCCCCAGGTTGGC
ACAACACGCACCCGCGGGACACTACGACGGCGGCGGTGACGACGACCAGC
TGAGCAGGATCATGCAGCAAGCCACAGACGAGGCACTGCTGAGCTTGTCG
GATCCGACGCCGGCCCCGCGACGGGGGGCGAGCGGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig1:7345365..7347400+ >mRNA_S-ischiensis_contig1.1061.1 ID=mRNA_S-ischiensis_contig1.1061.1|Name=mRNA_S-ischiensis_contig1.1061.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1416bp|location=Sequence derived from alignment at S-ischiensis_contig1:7345365..7347400+ (Schizocladia ischiensis KU_0333)
ATGCGCGGAAATAGACCAGATGATGTCTCTGACAGCAGCACGCCAGCGAT
TGATGACCTGCAAGCCAGGATGGAAAATCTCGCGCGAGACACTCTCCCAA
CAGAGGCAGAGTTGCAACAGAAAATGGATAAACTGACCGCACCAGAACGC
CCAGCGGCCTCGCCTCAAGAACTGGCCGACCGTTTCGAAAAGTTGGCGGG
GAGAACCCTTGCTGTCCATCCGTCTCAGCCCGCAGCAGACTACAGTGTCC
CTGAGATGCGCGGAAATAGACCAGATGATGTCTCTGACAGCAGCACGCCA
GCGATTGATGACCTGCAAGCCAGGATGGAAAATCTCGCGCGAGACACTCT
CCCAACAGAGGCAGAGTTGCAACAGAAAATGGATAAACTGACCGCACCAG
AACGCCCAGCGGCCTCGCCTCAAGAACTGGCCGACCGTTTCGAAAAGTTG
GCGGGGAGAACCCTTGCTGTCCATCCGTCTCAGCCCGCAGCAGACTACAG
TGTCCCTGAGTGCTTTGATGAGGATGCCACGGACCTGGATGATCTCCTGG
CGGATCCTGTGGATGCCACGGGTGGGGATGAGCACGAGGATGCGTTGAAG
TCGCGCCTGGGCCACCTGGAAGCCAAGGCAGCGCGTGTCGCAGTAAATGA
GGGCCACATGGCAGGCTTCAACGACTTGTCAGCAGGGGTTGAGTCAGCCG
TGCAGGCGTTTCTGGATGGCTCGGACGGTGGTGGGCTTGGCTCGACGGGC
GATGTAGATAGACTCCTGAGCATGTGCTTTGATGAGGATGCCACGGACCT
GGATGATCTCCTGGCGGATCCTGTGGATGCCACGGGTGGGGATGAGCACG
AGGATGCGTTGAAGTCGCGCCTGGGCCACCTGGAAGCCAAGGCAGCGCGT
GTCGCAGTAAATGAGGGCCACATGGCAGGCTTCAACGACTTGTCAGCAGG
GGTTGAGTCAGCCGTGCAGGCGTTTCTGGATGGCTCGGACGGTGGTGGGC
TTGGCTCGACGGGCGATGTAGATAGACTCCTGAGCATGGCGGCCGAGGAG
GTCCGGTTGGAAACTGGCGTGCCCACGGCCCCCAGGTTGGCACAACACGC
ACCCGCGGGACACTACGACGGCGGCGGTGACGACGACCAGCTGAGCAGGA
TCATGCAGCAAGCCACAGACGAGGCACTGCTGAGCTTGTCGGATCCGACG
CCGGCCCCGCGACGGGGGGCGAGCGGCGCGGCCGAGGAGGTCCGGTTGGA
AACTGGCGTGCCCACGGCCCCCAGGTTGGCACAACACGCACCCGCGGGAC
ACTACGACGGCGGCGGTGACGACGACCAGCTGAGCAGGATCATGCAGCAA
GCCACAGACGAGGCACTGCTGAGCTTGTCGGATCCGACGCCGGCCCCGCG
ACGGGGGGCGAGCGGC back to top
|