mRNA_S-ischiensis_contig1.1047.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1047.1
Unique NamemRNA_S-ischiensis_contig1.1047.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Match: D7FNK9_ECTSI (YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.330e-33
Identity = 61/102 (59.80%), Postives = 74/102 (72.55%), Query Frame = 3 
Query:   36 MAAERHVYVIMCKDEQ-CGRAVGDPRGGSVKRIANYEAHKAYQKETATPGSPHFINKISAGPMVEEDNKYMVGSCFLVEATRAEADAFIANDPFSKVGRWVT 338
            M+ E+H+Y I C D+Q CG+A G+PRGGS KR+ NY AHK YQ  TA P  P FINK+SAGP+V+E + YM+GS FLV ATR EA  F+ NDPF K G W T
Sbjct:    1 MSEEKHLYAIHCLDDQSCGKADGEPRGGSAKRMGNYPAHKEYQAATANPEDPRFINKVSAGPLVDEVDDYMIGSFFLVAATREEAQKFVDNDPFKKEGVWST 102
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BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Match: A0A835Z4J4_9STRA (YCII-related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4J4_9STRA)

HSP 1 Score: 120 bits (300), Expect = 6.740e-29
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:   42 AERHVYVIMCKDEQ-CGRA--VGDPRGGSVKRIANYEAHKAYQKETATPGSPHFINKISAGPMVEEDNKYMVGSCFLVEATRAEADAFIANDPFSKVGRWVTAT 344
            A++ +YVI C D+Q CG A    +PR GS KRI  Y  HKAYQ  TA P SP+FI KI+AGPMV +D KYMVGS F+VE TR + +AF  NDPF K G W + T
Sbjct:    2 ADKRLYVITCVDDQSCGPADPPAEPRSGSAKRIGIYAEHKAYQASTADPDSPNFITKITAGPMVTDDGKYMVGSSFIVEGTREQVEAFYKNDPFYKAGVWASIT 105
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BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Match: UPI0012EDAA8B (YciI family protein n=1 Tax=Mesorhizobium xinjiangense TaxID=2678685 RepID=UPI0012EDAA8B)

HSP 1 Score: 73.6 bits (179), Expect = 1.620e-12
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 3 
Query:   57 YVIMCKDEQCGRAVGDPRGGSVKRIANYEAHKAYQKETATPGSPHFINKISAGPMVEEDNKYMVGSCFLVEA-TRAEADAFIANDPFSKVGRW 332
            YV+ C D           G   KR+ NYEAHK Y   T+       +  + +GP++ +D + M+GSCF+VEA ++A+ +AF ANDPF+KVG W
Sbjct:    3 YVVHCLDHD---------GAVQKRLDNYEAHKDYLASTS-------MKTVISGPLLADDGETMIGSCFVVEADSKADVEAFNANDPFAKVGLW 79
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BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Match: UPI000E0D7DB3 (YciI family protein n=1 Tax=Acidibrevibacterium fodinaquatile TaxID=1969806 RepID=UPI000E0D7DB3)

HSP 1 Score: 68.2 bits (165), Expect = 1.280e-10
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 3 
Query:   57 YVIMCKDEQCGRAVGDPRGGSVKRIANYEAHKAYQKETATPGSPHFINKISAGPMVEEDNKYMVGSCFLVEA-TRAEADAFIANDPFSKVGRWVT 338
            YVI C D +         G   KR+A+YEAHKAY            I  + +GP++ +D + M+GSCF+VEA + AE +AF   DPF  +G W T
Sbjct:    3 YVIHCLDHE---------GAVDKRLAHYEAHKAYLAAAR-------IKTVISGPLLADDERTMIGSCFIVEAESLAEVEAFNREDPFYAIGLWRT 81
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BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Match: A0A2G8REM6_9RHOB (YCII domain-containing protein n=5 Tax=Rhodobacterales TaxID=204455 RepID=A0A2G8REM6_9RHOB)

HSP 1 Score: 67.8 bits (164), Expect = 1.750e-10
Identity = 37/97 (38.14%), Postives = 53/97 (54.64%), Query Frame = 3 
Query:   57 YVIMCKDEQCGRAVGDPRGGSVKRIANYEAHKAYQKETATPGSPHFINKISAGPMVEEDNKYMVGSCFLVEA-TRAEADAFIANDPFSKVGRWVTAT 344
            YVI C D +         G   KR+ANY+AHKAY            +  + +GP++ +D + M+GSCFL+EA + AE +AF  +DPF   G W T +
Sbjct:    3 YVIHCLDYE---------GAVEKRLANYDAHKAYLAAAT-------VKTLVSGPLLADDEETMIGSCFLLEADSLAEVEAFNRDDPFHHAGLWKTVS 83
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BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Match: A0A4R3FNG1_9HYPH (YCII domain-containing protein n=4 Tax=Rhizobium/Agrobacterium group TaxID=227290 RepID=A0A4R3FNG1_9HYPH)

HSP 1 Score: 66.2 bits (160), Expect = 6.100e-10
Identity = 37/95 (38.95%), Postives = 52/95 (54.74%), Query Frame = 3 
Query:   57 YVIMCKDEQCGRAVGDPRGGSVKRIANYEAHKAYQKETATPGSPHFINKISAGPMVEEDNKYMVGSCFLVEA-TRAEADAFIANDPFSKVGRWVT 338
            YV+ C D +         GG  +R+ANY+AHKAY     T         + +GP++ +DN+ M+GS F+ EA T+ E  AF   DPF+K G W T
Sbjct:    3 YVVHCLDHE---------GGVERRLANYDAHKAYLSTGKT-------KTVISGPLLADDNETMIGSLFVFEADTKEEVVAFNQADPFTKAGVWKT 81
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BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Match: A0A4R1RXC6_9HYPH (YCII domain-containing protein n=8 Tax=Rhizobium TaxID=379 RepID=A0A4R1RXC6_9HYPH)

HSP 1 Score: 66.2 bits (160), Expect = 6.100e-10
Identity = 36/95 (37.89%), Postives = 52/95 (54.74%), Query Frame = 3 
Query:   57 YVIMCKDEQCGRAVGDPRGGSVKRIANYEAHKAYQKETATPGSPHFINKISAGPMVEEDNKYMVGSCFLVEA-TRAEADAFIANDPFSKVGRWVT 338
            Y++ C D +         G   KR+ANY+AHKAY    +T         + +GP++ +DN+ M+GS FL+EA  + E  AF   DPF+K G W T
Sbjct:    3 YIVHCLDHE---------GAVEKRLANYDAHKAYLASAST-------KTVISGPLLADDNETMIGSLFLLEADNKEEVVAFNRADPFTKAGVWKT 81
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BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Match: A0A0J6SEC8_9HYPH (YCII domain-containing protein n=5 Tax=Methylobacterium TaxID=407 RepID=A0A0J6SEC8_9HYPH)

HSP 1 Score: 63.9 bits (154), Expect = 4.520e-9
Identity = 35/84 (41.67%), Postives = 47/84 (55.95%), Query Frame = 3 
Query:  102 DPRGGSVKRIANYEAHKAYQKETATPGSPHFINKISAGPMVEEDNKYMVGSCFLVEAT-RAEADAFIANDPFSKVGRWVTATAT 350
            D  G   +R+A+YEAHKAY       G P  +  + +GP++ ED + M+GS F+VEA  RA  +AF A DPF   G W     T
Sbjct:   10 DHAGALERRLAHYEAHKAYL------GGPLPVRIVVSGPLLAEDGETMIGSLFIVEAPDRAAVEAFHAADPFKAAGIWARVEIT 87
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BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Match: A0A1D7ZU82_9BURK (YCII domain-containing protein n=5 Tax=Burkholderia TaxID=32008 RepID=A0A1D7ZU82_9BURK)

HSP 1 Score: 62.0 bits (149), Expect = 1.930e-8
Identity = 36/93 (38.71%), Postives = 48/93 (51.61%), Query Frame = 3 
Query:   57 YVIMCKDEQCGRAVGDPRGGSVKRIANYEAHKAYQKETATPGSPHFINKISAGPMVEEDNKYMVGSCFLVEATRAE-ADAFIANDPFSKVGRW 332
            +V+ C D +         G   +R+ANYEAHKAY            +  I +GP+V ++ + M+GS FLVEA R E   AF  NDPFS    W
Sbjct:    3 FVVHCVDRE---------GALERRLANYEAHKAYLASAK-------VRSIISGPLVSDEGETMIGSFFLVEAERKEDVIAFNRNDPFSAADVW 79
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BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Match: A0A1B9UZ30_RHIRD (YCII domain-containing protein n=10 Tax=Rhizobiaceae TaxID=82115 RepID=A0A1B9UZ30_RHIRD)

HSP 1 Score: 62.0 bits (149), Expect = 1.990e-8
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 3 
Query:  102 DPRGGSVKRIANYEAHKAYQKETATPGSPHFINKISAGPMVEEDNKYMVGSCFLVEATRAEADA-FIANDPFSKVGRW 332
            D + G  KR+ANY+AHKAY       G P  +  + +GP+V +D + M+GS F+ EA + +    F ANDPF+K   W
Sbjct:    9 DHKDGLPKRLANYDAHKAYL------GGPGPVGTVISGPLVADDGETMIGSLFVFEAEKKQDVVDFNANDPFTKANVW 80
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNK9_ECTSI3.330e-3359.80YCII-related n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A835Z4J4_9STRA6.740e-2956.73YCII-related n=1 Tax=Tribonema minus TaxID=303371 ... [more]
UPI0012EDAA8B1.620e-1240.86YciI family protein n=1 Tax=Mesorhizobium xinjiang... [more]
UPI000E0D7DB31.280e-1040.00YciI family protein n=1 Tax=Acidibrevibacterium fo... [more]
A0A2G8REM6_9RHOB1.750e-1038.14YCII domain-containing protein n=5 Tax=Rhodobacter... [more]
A0A4R3FNG1_9HYPH6.100e-1038.95YCII domain-containing protein n=4 Tax=Rhizobium/A... [more]
A0A4R1RXC6_9HYPH6.100e-1037.89YCII domain-containing protein n=8 Tax=Rhizobium T... [more]
A0A0J6SEC8_9HYPH4.520e-941.67YCII domain-containing protein n=5 Tax=Methylobact... [more]
A0A1D7ZU82_9BURK1.930e-838.71YCII domain-containing protein n=5 Tax=Burkholderi... [more]
A0A1B9UZ30_RHIRD1.990e-841.03YCII domain-containing protein n=10 Tax=Rhizobiace... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7233279..7235052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score68.6
Seed ortholog evalue2.7e-09
Seed eggNOG ortholog1185766.DL1_08400
KEGG koko:K09780
EggNOG free text desc.YCII-related domain
EggNOG OGsCOG2350@1,COG2350@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDimeric alpha-beta barrel
Ec32 orthologEc-01_005090.1
Exons3
Model size1463
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1047.1prot_S-ischiensis_contig1.1047.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7233314..7234041 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.4613047-UTR-S-ischiensis_contig1:7233278..72333131622815478.4613047-UTR-S-ischiensis_contig1:7233278..7233313Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7233279..7233313 +
1695739724.9456053-UTR-S-ischiensis_contig1:7233278..72333131695739724.9456053-UTR-S-ischiensis_contig1:7233278..7233313Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7233279..7233313 +
1622815478.5168927-UTR-S-ischiensis_contig1:7234041..72350521622815478.5168927-UTR-S-ischiensis_contig1:7234041..7235052Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7234042..7235052 +
1695739725.0015862-UTR-S-ischiensis_contig1:7234041..72350521695739725.0015862-UTR-S-ischiensis_contig1:7234041..7235052Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7234042..7235052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815478.473046-CDS-S-ischiensis_contig1:7233313..72333231622815478.473046-CDS-S-ischiensis_contig1:7233313..7233323Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7233314..7233323 +
1695739724.9655848-CDS-S-ischiensis_contig1:7233313..72333231695739724.9655848-CDS-S-ischiensis_contig1:7233313..7233323Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7233314..7233323 +
1622815478.4884155-CDS-S-ischiensis_contig1:7233486..72335931622815478.4884155-CDS-S-ischiensis_contig1:7233486..7233593Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7233487..7233593 +
1695739724.9743018-CDS-S-ischiensis_contig1:7233486..72335931695739724.9743018-CDS-S-ischiensis_contig1:7233486..7233593Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7233487..7233593 +
1622815478.5033627-CDS-S-ischiensis_contig1:7233741..72340411622815478.5033627-CDS-S-ischiensis_contig1:7233741..7234041Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7233742..7234041 +
1695739724.9837584-CDS-S-ischiensis_contig1:7233741..72340411695739724.9837584-CDS-S-ischiensis_contig1:7233741..7234041Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7233742..7234041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1047.1

>prot_S-ischiensis_contig1.1047.1 ID=prot_S-ischiensis_contig1.1047.1|Name=mRNA_S-ischiensis_contig1.1047.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=139bp
MAAERHVYVIMCKDEQCGRAVGDPRGGSVKRIANYEAHKAYQKETATPGS
PHFINKISAGPMVEEDNKYMVGSCFLVEATRAEADAFIANDPFSKVGRWV
TATATLPLLSCRPRGSVVVGQGYSRGSFSPARWSKAEP*
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mRNA from alignment at S-ischiensis_contig1:7233279..7235052+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1047.1 ID=mRNA_S-ischiensis_contig1.1047.1|Name=mRNA_S-ischiensis_contig1.1047.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1774bp|location=Sequence derived from alignment at S-ischiensis_contig1:7233279..7235052+ (Schizocladia ischiensis KU_0333)
TGTCAACCTGAGCGACGCCGGCAAGTAGCGGCGCCATGGCTGCAGGTAAG
CAAGCGCGGACGGGGAGGGATATGATGACGTGTTTTGCATCGACGTCGTA
CCCATGATGCTGCGACCTCTCGTCCTTGAAGAGCTTCCTGACCCGCCAAG
CGCCTCGGCAACCCGGCAATGGTTCATTTGTTTGACTCATGTTCGCTCGT
GCTCACAGAGAGGCACGTGTATGTCATCATGTGCAAGGACGAGCAGTGCG
GAAGGGCTGTAGGAGACCCCCGGGGGGGCTCTGTGAAGCGCATCGCCAAC
TACGAGGCCCACAAGGTCAGGAATTGTCTCCCCCTACTCTAATGCTTCAA
CAATGTTATCACTGCAAGAATGTCCTATGGAAAGTGGCACATGGTCTTTG
CAAATACGTTGCTAAGGCCTAGTTGCACTTTCGGTTGTCCCTTCCACCTG
ATCCTCGCCCCAGGCGTACCAAAAAGAGACAGCCACCCCAGGAAGCCCAC
ACTTCATCAACAAGATCTCGGCCGGGCCCATGGTGGAGGAGGACAACAAG
TACATGGTCGGGAGCTGCTTCCTCGTGGAGGCTACCCGTGCAGAGGCCGA
TGCCTTCATCGCCAACGACCCTTTCAGTAAGGTGGGCCGCTGGGTGACCG
CAACGGCCACCCTGCCCTTGCTCTCATGTCGCCCCCGGGGGTCGGTTGTG
GTTGGGCAAGGATACAGCAGGGGCAGCTTCTCCCCCGCCAGGTGGTCAAA
AGCAGAACCGTGACTGGTACCGTGTCGGTGAGAGGCAGGCCAGGGGTGAA
ACTGAATGCGGAGAACGTTACGGTGGATAGGGTGGTTTCCATGAGCGGCC
TGGTTTATCGCCCTGGACTTGGGGGATGGAGGCCTGGTGTAAGCTCGGAG
GCAGCGGCTCTGTGGCGATAGGCACACCAGGTTGCTGGAAGTACCATAGG
GAACACCACCTCTCTTACCTAGCACCGAGAGCTCTCGTTTCCCCCTGTCA
CCGAAATAGTGTCTCGCGCCGCACGTGTGTGCAGTGAGAAGTGCATTTCT
TTGTTTTTCATTCTCAACTCTTTACGCATTGGGAGGGTGATCTATTGTCC
TTGTTGAGACCGCCCCCCCTTGAAGCCGCAGCGGCGCACGTGCTACGTCA
AATCGTGAACCATAGACTGCAGTATCTCACCTGCAAGTGCTACTGAGCCA
TGTGCCCTCCCCTCGGCCCCCCACCCCCCACACGTGCGCTCCCGCCACTG
CACCGGCGGCAGGGAGGCGTGTGGGCGAGCGTGTACATCTCGCGATACGC
GCCCGTGGGGGCGGGAATCAAGGCGTACGGAGCTAGTCTTTGAAGCCTGG
GGCAATGCTCCCCCTGGATCCCGCTTTGGAAAGGCCCGTGCAGTTGCATG
TGTGTACTCGAATGTGGGTACACTTGCACTACTTCGGCGACACACTGACT
CTTTGTCACGCTTTGAGCATCACACTCACCGAGTGGCGGTGAGTACGTGC
CGCCTGGGTTGCGCCTTGTGTCTGTGAACAGCGGGCTACATCCGCCCGAG
CCCAACGGCCCGAGTGCAGGCCGGTTCGGCGCGCAAGTGGCCACCTGCTG
TACTGTACTGCGCTACCCAATTTTGTGAGTGCCCGATTTCATGTGCTTTT
CTGTCCCAGTTGCACGCGAGGGCCCGTTCAGTTCCAAGAGAGACACTCTT
GCACTCGAGTACTTCGTATGCAGGTACTCTTAACTTAGTAACACGTCTCT
CGCCGTCATTCAGACGACTTCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7233279..7235052+

>mRNA_S-ischiensis_contig1.1047.1 ID=mRNA_S-ischiensis_contig1.1047.1|Name=mRNA_S-ischiensis_contig1.1047.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=834bp|location=Sequence derived from alignment at S-ischiensis_contig1:7233279..7235052+ (Schizocladia ischiensis KU_0333)
ATGGCTGCAGATGGCTGCAGAGAGGCACGTGTATGTCATCATGTGCAAGG
ACGAGCAGTGCGGAAGGGCTGTAGGAGACCCCCGGGGGGGCTCTGTGAAG
CGCATCGCCAACTACGAGGCCCACAAGAGAGGCACGTGTATGTCATCATG
TGCAAGGACGAGCAGTGCGGAAGGGCTGTAGGAGACCCCCGGGGGGGCTC
TGTGAAGCGCATCGCCAACTACGAGGCCCACAAGGCGTACCAAAAAGAGA
CAGCCACCCCAGGAAGCCCACACTTCATCAACAAGATCTCGGCCGGGCCC
ATGGTGGAGGAGGACAACAAGTACATGGTCGGGAGCTGCTTCCTCGTGGA
GGCTACCCGTGCAGAGGCCGATGCCTTCATCGCCAACGACCCTTTCAGTA
AGGTGGGCCGCTGGGTGACCGCAACGGCCACCCTGCCCTTGCTCTCATGT
CGCCCCCGGGGGTCGGTTGTGGTTGGGCAAGGATACAGCAGGGGCAGCTT
CTCCCCCGCCAGGTGGTCAAAAGCAGAACCGTGAGCGTACCAAAAAGAGA
CAGCCACCCCAGGAAGCCCACACTTCATCAACAAGATCTCGGCCGGGCCC
ATGGTGGAGGAGGACAACAAGTACATGGTCGGGAGCTGCTTCCTCGTGGA
GGCTACCCGTGCAGAGGCCGATGCCTTCATCGCCAACGACCCTTTCAGTA
AGGTGGGCCGCTGGGTGACCGCAACGGCCACCCTGCCCTTGCTCTCATGT
CGCCCCCGGGGGTCGGTTGTGGTTGGGCAAGGATACAGCAGGGGCAGCTT
CTCCCCCGCCAGGTGGTCAAAAGCAGAACCGTGA
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