|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 943 |
| Cds size | 522 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815359.0070527-UTR-S-ischiensis_contig1:7224396..7224498 | 1622815359.0070527-UTR-S-ischiensis_contig1:7224396..7224498 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 7224397..7224498 + |
| 1695739658.9803023-UTR-S-ischiensis_contig1:7224396..7224498 | 1695739658.9803023-UTR-S-ischiensis_contig1:7224396..7224498 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 7224397..7224498 + |
| 1622815359.068956-UTR-S-ischiensis_contig1:7226134..7226453 | 1622815359.068956-UTR-S-ischiensis_contig1:7226134..7226453 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 7226135..7226453 + |
| 1695739659.0283148-UTR-S-ischiensis_contig1:7226134..7226453 | 1695739659.0283148-UTR-S-ischiensis_contig1:7226134..7226453 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig1 7226135..7226453 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815359.025694-CDS-S-ischiensis_contig1:7224498..7224876 | 1622815359.025694-CDS-S-ischiensis_contig1:7224498..7224876 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7224499..7224876 + |
| 1695739658.9899702-CDS-S-ischiensis_contig1:7224498..7224876 | 1695739658.9899702-CDS-S-ischiensis_contig1:7224498..7224876 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7224499..7224876 + |
| 1622815359.0392725-CDS-S-ischiensis_contig1:7225628..7225713 | 1622815359.0392725-CDS-S-ischiensis_contig1:7225628..7225713 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7225629..7225713 + |
| 1695739658.9986725-CDS-S-ischiensis_contig1:7225628..7225713 | 1695739658.9986725-CDS-S-ischiensis_contig1:7225628..7225713 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7225629..7225713 + |
| 1622815359.053824-CDS-S-ischiensis_contig1:7226075..7226134 | 1622815359.053824-CDS-S-ischiensis_contig1:7226075..7226134 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7226076..7226134 + |
| 1695739659.0151339-CDS-S-ischiensis_contig1:7226075..7226134 | 1695739659.0151339-CDS-S-ischiensis_contig1:7226075..7226134 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig1 7226076..7226134 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.1044.1 >prot_S-ischiensis_contig1.1044.1 ID=prot_S-ischiensis_contig1.1044.1|Name=mRNA_S-ischiensis_contig1.1044.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=174bp
MMRCRCKAWACRLCGGLGDGHRCPQAELHAAGGFWSSWATFMPRCWGQGQ
DCTAAGPIQVTVRVGEGHRVWRVGQRASCRGGQGQSAAGGDWPGSGHTRR
APGSWWVPAEGGRVVELHAGVARGREGEYPSPPGPLVPAQRQLLGHVAAA
GAVLDPARHGVCSSEPSAAAAPH* back to topmRNA from alignment at S-ischiensis_contig1:7224397..7226453+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig1.1044.1 ID=mRNA_S-ischiensis_contig1.1044.1|Name=mRNA_S-ischiensis_contig1.1044.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2057bp|location=Sequence derived from alignment at S-ischiensis_contig1:7224397..7226453+ (Schizocladia ischiensis KU_0333)
GGGCGGGGAGCAGGAGCAGGAGGAGCAGGCACAAGGGCAGCCAGCAATGG
CGCTGCGGGTGGGGATGTGCAGGCCAAGTGCACAGTGCTCTTGTCGCCGC
CCATGATGCGCTGCCGGTGCAAGGCGTGGGCATGCAGGCTGTGCGGCGGC
CTGGGGGACGGCCACCGCTGCCCCCAGGCGGAGCTGCACGCCGCAGGGGG
CTTCTGGAGCTCTTGGGCAACCTTCATGCCCCGCTGCTGGGGGCAGGGGC
AAGACTGTACCGCCGCCGGCCCGATTCAAGTCACGGTCCGCGTGGGCGAA
GGGCACAGGGTTTGGCGGGTTGGGCAGCGAGCGAGCTGCCGCGGCGGACA
AGGCCAGAGCGCAGCAGGCGGAGACTGGCCTGGAAGCGGACACACGCGCC
GTGCTCCAGGCTCTTGGTGGGTGCCTGCCGAGGGCGGGCGAGTCGTCGAG
CTACATGCCGGAGTTGCTCGCGGCCGTGAGGTGGGTCGGTCTGGTGTCTG
TGCACTGTTTTCTGTTGCATGGGTTCTGGGCGGTGCCTGCGTGTTGTGCT
TGGTGGCGTGTTTGTGTGGTATCTGCGCGTGGACTTTGAGCGCGCTTAGG
CGCGCACGCGTGTGAGCGTGTCTGTGTGCGCGTGTGTGGCTCGCGTACGG
TGGATGTTGCCACCAAGTGCGCCACTGCACATCGCGTTTGGTGTTTCTCT
GTCTGTTTACTGTACTGCAGGTACTGATGTACTCATAGCCTAGTACTTCG
AAGTAGTACTCTACGAAGCACACTATTTTACTTGCATGTAGCTTCGAAGT
ACTGCGTAGTCCTCGCGTCGTGGGCGTCGCGGCCCAGAGACCATGAACCA
CGCGCCCTGTCCCGAGTTTGGACCCACACAGCTGTGCATAGCACACTGCG
GCACCTCTCGTTTCAAACACCCTTCCGCCGCTCTCCCTCATCACCTCTCT
TTCGGGCTCTTTGCCTATTCATCACTATCGCTCGCTTCCTAGTGTGATCC
GCATGATGGTGCATGGCGTCCGCACGTCTGCACTTCCTTGGCCCCGGGCC
CAAGCTCTACCTGTCTCCTTCCCTCCCTCTTTCCCACCCTCTCCCTTGCG
TGCCCCCTCCCTTGTCCCTCCTGCGGCCGCGCCCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCCCCTTGCTCCCTCTCCCTCTCTCC
CTTCCCATGATGGATGGCTCGCGCTCTGGCAGGGAGAGTACCCTTCCCCA
CCTGGTCCGCTCGTACCTGCGCAACGGCAGCTTCTGGGACATGTCGCGGC
GGCGGGAGCTGTACTTGGTGAGGCCATGCGCCCCCTGATGGCCCGTCCCC
TGTTGCCTTCGTCTCACAAGTAGGAGCTGTGGGCCGGGCATTGGATTTTT
GGGTTCGGTTGTGGTCTCTCCCTAGTTTAGACTGGTCTTTCATGAACTTC
GAAGTACTCATAGCCTTCATGAGCAGCTTGCGCGATAGACTGAGGTCTGA
AATGTGTTCTGCTCCGTCTTCCTCTCTCCTTCTTCTTCTGCTTCTTCTTC
GTCTTCTTCTTCTTCCTTTTCTTCTTCTCTTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCGCTCTCTCCTTCGACTAACCGCGCCAGGGCTCACTTGCAAC
ACGCCCGGCCCCCGTGTGCCCCATGTCAGACCCTGCTCGACACGGTGTTT
GCTCTAGTGAGCCATCCGCTGCTGCTGCCCCTCATTGACCACGTGCCCAA
GACACGGACATCTCCCGGAACCGCAGTCCCTGTGAAGGCAGCCTCTGGGG
GGAGCACACGACACAAAGCTCGCAGCGGTGAGGCAGTGCCTGGGGACGCG
AGTAACACTGCAGGGGCTGCCACGGGAGGGCGGGAGGAGGCCGGCCAACA
CTGCGGCAGCGAGGAGGACCTGGCTGGTTTGCGCCCCAGGGAGCTCAAGG
CACTCATGGCAAGCCTGCAGGTGGACGCCTCTGAGTGCCTGGAGAGGGCT
GACCTGTGGCCCGGCTGGTGGAGTCCGGGTGGTTTGCCCCCTCGCGAACG
GGCCGGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig1:7224397..7226453+ >mRNA_S-ischiensis_contig1.1044.1 ID=mRNA_S-ischiensis_contig1.1044.1|Name=mRNA_S-ischiensis_contig1.1044.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1044bp|location=Sequence derived from alignment at S-ischiensis_contig1:7224397..7226453+ (Schizocladia ischiensis KU_0333)
ATGATGCGCTGCCGGTGCAAGGCGTGGGCATGCAGGCTGTGCGGCGGCCT
GGGGGACGGCCACCGCTGCCCCCAGGCGGAGCTGCACGCCGCAGGGGGCT
TCTGGAGCTCTTGGGCAACCTTCATGCCCCGCTGCTGGGGGCAGGGGCAA
GACTGTACCGCCGCCGGCCCGATTCAAGTCACGGTCCGCGTGGGCGAAGG
GCACAGGGTTTGGCGGGTTGGGCAGCGAGCGAGCTGCCGCGGCGGACAAG
GCCAGAGCGCAGCAGGCGGAGACTGGCCTGGAAGCGGACACACGCGCCGT
GCTCCAGGCTCTTGGTGGGTGCCTGCCGAGGGCGGGCGAGTCGTCGAGCT
ACATGCCGGAGTTGCTCGCGGCCGTGAGATGATGCGCTGCCGGTGCAAGG
CGTGGGCATGCAGGCTGTGCGGCGGCCTGGGGGACGGCCACCGCTGCCCC
CAGGCGGAGCTGCACGCCGCAGGGGGCTTCTGGAGCTCTTGGGCAACCTT
CATGCCCCGCTGCTGGGGGCAGGGGCAAGACTGTACCGCCGCCGGCCCGA
TTCAAGTCACGGTCCGCGTGGGCGAAGGGCACAGGGTTTGGCGGGTTGGG
CAGCGAGCGAGCTGCCGCGGCGGACAAGGCCAGAGCGCAGCAGGCGGAGA
CTGGCCTGGAAGCGGACACACGCGCCGTGCTCCAGGCTCTTGGTGGGTGC
CTGCCGAGGGCGGGCGAGTCGTCGAGCTACATGCCGGAGTTGCTCGCGGC
CGTGAGGGAGAGTACCCTTCCCCACCTGGTCCGCTCGTACCTGCGCAACG
GCAGCTTCTGGGACATGTCGCGGCGGCGGGAGCTGTACTTGGGAGAGTAC
CCTTCCCCACCTGGTCCGCTCGTACCTGCGCAACGGCAGCTTCTGGGACA
TGTCGCGGCGGCGGGAGCTGTACTTGACCCTGCTCGACACGGTGTTTGCT
CTAGTGAGCCATCCGCTGCTGCTGCCCCTCATTGAACCCTGCTCGACACG
GTGTTTGCTCTAGTGAGCCATCCGCTGCTGCTGCCCCTCATTGA back to top
|