mRNA_S-ischiensis_contig1.103.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Match: A0A7S3XR94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XR94_HETAK) HSP 1 Score: 89.4 bits (220), Expect = 4.480e-16 Identity = 64/186 (34.41%), Postives = 86/186 (46.24%), Query Frame = 1
Query: 436 TLKELLELPSAFE-RNGNGSGEADVTVILTYRPAGTNAGGDSLRQNPDDGTGGXXXSGEEALSQQLKALAAGSVRPNQVWLCAFNTTGRGGXXXXXXXXXSGAEVVSRLAGQYGGGEEFRGGVYPVATDLDLAGYGRFQLALQASTEYIWVLDPGVLPGRRFLELLAHASDASALVPGALGAAGRL 990
TL ELL LPSA R G + TVIL + E+L QL+ALA ++RP QVW+C FN+ E + +Y EF +Y V ++ + +GRFQ ALQAST+Y+W++D +LPG RFLE+L H L GA G+ G L
Sbjct: 7 TLPELLALPSAGPLRAKQNGGRSPTTVILNHWK-------------------------RESLELQLQALAGQTLRPEQVWVCLFNSDR--------------VEYYRAIVDRYKA--EFDNQLYMVISEFNFKYFGRFQFALQASTKYVWIIDDDILPGARFLEILNHVGGIKDL-KGAFGSIGWL 150
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Match: A0A6H5KK73_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK73_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 1.410e-12 Identity = 53/170 (31.18%), Postives = 84/170 (49.41%), Query Frame = 1
Query: 430 MLTLKELLELPSAFERNGNGSGEADVTVILTYRPAGTNAGGDSLRQNPDDGTGGXXXSGEEALSQQLKALAAGSVRP-NQVWLCAFNTTGRGGXXXXXXXXXSGAEVVSRLAGQYGGGEEFRGGVYPVATDLDLAGYGRFQLALQASTEYIWVLDPGVLPGRRFLELLAH 936
+LTL++L+ +PS+++ + + +D T+IL + T L++QL A+ +V P VW+CAFN+ VV ++GG + GG++ VA+ + YGRFQ+ALQA T+Y+WV+D V+PGR FL L H
Sbjct: 40 LLTLQQLMAMPSSYDPSATNA-MSDTTIILNHWTRTT-------------------------LTEQLDAVLRLTVHPAGGVWVCAFNSPREAEYRA----------VVESYRSKFGG--DRGGGLFFVASSFNFKYYGRFQMALQARTKYVWVIDDDVMPGRHFLHQLNH 171
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Match: D8LEV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEV7_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 5.430e-6 Identity = 52/183 (28.42%), Postives = 71/183 (38.80%), Query Frame = 1
Query: 436 TLKELLELPSAFERNGNGSGEADVTVILTYRPAGTNAGGDSLRQNPDDGTGGXXXSGEEALSQQLKALAAGSVRPNQVWLC--------------AFNTTGRGGXXXXXXXXXSGAEVVSRLAGQYGGGEEFRGGVYPVATDLDLAGYGRFQLALQASTEYIWVLDPGVLPGRRFLELLAHAS 942
T+ LLEL S F ADVT I+ P+ L QL+AL +V+P QVW+ + + R G ++ + G G G G + V T G FQL++QA T +IW+++P VLPG RFL LL H S
Sbjct: 67 TITGLLELNSDFLLEEGKGQLADVTAIVIASPS---------------------------LEAQLEALLVSTVQPCQVWVAMPAMETAENLAVTSTYQKSNRFGKRLHLVKSDFFSDGAPGVVGGGGRGSGGDGRFFDVKT-------GMFQLSMQADTTFIWLMEPDVLPGSRFLYLLMHVS 215
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Match: D8LPR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPR2_ECTSI) HSP 1 Score: 57.8 bits (138), Expect = 1.210e-5 Identity = 36/129 (27.91%), Postives = 66/129 (51.16%), Query Frame = 1
Query: 610 EALSQQLKALAAGSVRPN--QVWLCAFNTTGRGGXXXXXXXXXSGAEVVSRLAGQYGGGEEFRGGVYPVATDLDLAGYGRFQLALQASTEYIWVLDPGVLPGRRFLELLAHASDASALVPGALGAAGRL 990
E L++QL +L A + + +VW+C F+ + + R+ + +++ V V +D + YGRFQ+AL A T+++W++D ++PG ++L L HA+ L LG+ GR+
Sbjct: 240 EVLTEQLDSLFAQTTASHIAEVWVCVFSAPAQ--------------DYALRVVKE----SKYKN-VRLVVSDFNFKFYGRFQMALTAPTDFVWLIDDDMIPGNKYLGQLMHAAGTELLGSSLLGSIGRV 349
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Match: I1IDP4_BRADI (Uncharacterized protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IDP4_BRADI) HSP 1 Score: 58.2 bits (139), Expect = 1.220e-5 Identity = 36/125 (28.80%), Postives = 59/125 (47.20%), Query Frame = 1
Query: 616 LSQQLKALAAGSVRPNQVWLCAFNTTGRGGXXXXXXXXXSGAEVVSRLAGQYGGGEEFRGGVYPVATDLDLAGYGRFQLALQASTEYIWVLDPGVLPGRRFLELLAHASDASALVPGALGAAGRL 990
L QL L A ++ ++VW+ AF + + R+ G Y + V++ D YGRFQ+ALQA +++ ++LD ++PG R LE+L H + LG+ GR+
Sbjct: 183 LCAQLDTLRAQTLPFHRVWVLAFGSPNE--------------PALRRIVGSYNDSR-----ISFVSSGYDFKYYGRFQMALQAESDFTYILDDDMIPGTRMLEILCHVAGTDKYRNAVLGSIGRI 288
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Match: A0A6H5KPH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH5_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 2.220e-5 Identity = 36/129 (27.91%), Postives = 66/129 (51.16%), Query Frame = 1
Query: 610 EALSQQLKALAAGSVRPN--QVWLCAFNTTGRGGXXXXXXXXXSGAEVVSRLAGQYGGGEEFRGGVYPVATDLDLAGYGRFQLALQASTEYIWVLDPGVLPGRRFLELLAHASDASALVPGALGAAGRL 990
E L++QL +L A + + +VW+C F+ + + R+ + +++ V V +D + YGRFQ+AL A T+++W++D ++PG ++L L HA+ L LG+ GR+
Sbjct: 254 EVLTEQLDSLFAQTTASHIAEVWVCVFSAPAQ--------------DYALRVVKE----SKYKN-VRLVVSDFNFKFYGRFQMALTAPTDFVWLVDDDMIPGNKYLGQLMHAAGTELLGSSLLGSIGRV 363
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Match: A0A6H5KSC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSC9_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 2.300e-5 Identity = 52/185 (28.11%), Postives = 72/185 (38.92%), Query Frame = 1
Query: 436 TLKELLELPSAFERNGNGSGEADVTVILTYRPAGTNAGGDSLRQNPDDGTGGXXXSGEEALSQQLKALAAGSVRPNQVWLC--------------AFNTTGRGGXXXXXXXXXSGAEVVSRLAGQYGGGEEFR--GGVYPVATDLDLAGYGRFQLALQASTEYIWVLDPGVLPGRRFLELLAHAS 942
T+ +LLEL S F ADVT IL P+ L QL+AL +V+P QVW+ + + R G ++ G+ GG G + V T G FQL++QA T +IW+++P V+PG RFL LL H S
Sbjct: 183 TVTDLLELKSDFLLEEGKGQLADVTAILIASPS---------------------------LEAQLEALLVSAVQPCQVWVAMPALETAENLAVTSTYQKSTRFGKRLHLVKSDLFSDGPPAKVGEGGGXXXXXXDGSFFDVKT-------GMFQLSMQADTTFIWLMEPDVVPGSRFLYLLMHVS 333
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Match: A0A3B6QNJ3_WHEAT (Uncharacterized protein n=11 Tax=Pooideae TaxID=147368 RepID=A0A3B6QNJ3_WHEAT) HSP 1 Score: 56.2 bits (134), Expect = 5.080e-5 Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 808 VATDLDLAGYGRFQLALQASTEYIWVLDPGVLPGRRFLELLAHASDASALVPGALGAAGRL 990
VA+ D YGRFQ+ALQA +++++VLD ++PG R LE+L H + LG+ GR+
Sbjct: 224 VASGYDFKYYGRFQMALQAESDFVYVLDDDMIPGTRMLEILCHVAGTDKYRNAVLGSIGRI 284
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Match: A0A6P5H2H3_ANACO (uncharacterized protein LOC109728978 n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5H2H3_ANACO) HSP 1 Score: 55.8 bits (133), Expect = 6.760e-5 Identity = 24/61 (39.34%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 808 VATDLDLAGYGRFQLALQASTEYIWVLDPGVLPGRRFLELLAHASDASALVPGALGAAGRL 990
V++ D YGRFQ+ALQ ++++++LD ++PG+R LE+LAH LG+ GR+
Sbjct: 230 VSSTYDFKYYGRFQMALQTESDFVYILDDDMIPGKRMLEILAHVGGTEKYKNSVLGSIGRI 290
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Match: A0A835R1F7_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835R1F7_VANPL) HSP 1 Score: 54.7 bits (130), Expect = 8.920e-5 Identity = 23/61 (37.70%), Postives = 39/61 (63.93%), Query Frame = 1
Query: 808 VATDLDLAGYGRFQLALQASTEYIWVLDPGVLPGRRFLELLAHASDASALVPGALGAAGRL 990
V++ D YGRFQ+ALQ +++++++D ++PGR+ LE+LAH LG+ GR+
Sbjct: 205 VSSSYDFKYYGRFQMALQTESDFVYIVDDDMIPGRKMLEILAHVGGTEKYRNAVLGSIGRI 265 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig1.103.1 >prot_S-ischiensis_contig1.103.1 ID=prot_S-ischiensis_contig1.103.1|Name=mRNA_S-ischiensis_contig1.103.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=330bp KPQDYTLALPRVVPACRTGCPPLVRLPQLNIHLPLRVPYYMFRSRGSVGAback to top mRNA from alignment at S-ischiensis_contig1:698300..701974+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig1.103.1 ID=mRNA_S-ischiensis_contig1.103.1|Name=mRNA_S-ischiensis_contig1.103.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3675bp|location=Sequence derived from alignment at S-ischiensis_contig1:698300..701974+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig1:698300..701974+ >mRNA_S-ischiensis_contig1.103.1 ID=mRNA_S-ischiensis_contig1.103.1|Name=mRNA_S-ischiensis_contig1.103.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1980bp|location=Sequence derived from alignment at S-ischiensis_contig1:698300..701974+ (Schizocladia ischiensis KU_0333)back to top |