mRNA_S-ischiensis_contig1.1024.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1024.1
Unique NamemRNA_S-ischiensis_contig1.1024.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7071714..7072526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size813
Cds size420
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1024.1prot_S-ischiensis_contig1.1024.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7071922..7072341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.4319828-UTR-S-ischiensis_contig1:7071713..70719211622815375.4319828-UTR-S-ischiensis_contig1:7071713..7071921Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7071714..7071921 +
1695739665.3872895-UTR-S-ischiensis_contig1:7071713..70719211695739665.3872895-UTR-S-ischiensis_contig1:7071713..7071921Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7071714..7071921 +
1622815375.4522483-UTR-S-ischiensis_contig1:7072341..70725261622815375.4522483-UTR-S-ischiensis_contig1:7072341..7072526Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7072342..7072526 +
1695739665.4051502-UTR-S-ischiensis_contig1:7072341..70725261695739665.4051502-UTR-S-ischiensis_contig1:7072341..7072526Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7072342..7072526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815375.4430757-CDS-S-ischiensis_contig1:7071921..70723411622815375.4430757-CDS-S-ischiensis_contig1:7071921..7072341Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7071922..7072341 +
1695739665.395614-CDS-S-ischiensis_contig1:7071921..70723411695739665.395614-CDS-S-ischiensis_contig1:7071921..7072341Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7071922..7072341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1024.1

>prot_S-ischiensis_contig1.1024.1 ID=prot_S-ischiensis_contig1.1024.1|Name=mRNA_S-ischiensis_contig1.1024.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=140bp
MCAPQRATPCLSLHGCLLLLMYQCGTVGRACAAHPPTHTPDVPDKFLNVY
PLQLRAIFPTQLYEHVVFSTDSLFNGQPYRGKGTATPHLGIGLGRGAGPC
LVVSRKLRAGHACQPTLLPPTLARGRIPDKPQQTVCLFA*
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mRNA from alignment at S-ischiensis_contig1:7071714..7072526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1024.1 ID=mRNA_S-ischiensis_contig1.1024.1|Name=mRNA_S-ischiensis_contig1.1024.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=813bp|location=Sequence derived from alignment at S-ischiensis_contig1:7071714..7072526+ (Schizocladia ischiensis KU_0333)
TGGAACCTACCTACATCGCCTGCCAGATTGTCAAACCGTTCTGTCACATC
CGCTATCTGGGTACCAACGCAGGGCATACACACATTCCCAATATACAAAT
CCGAGGACGGGTTGGGCTAACGGGCCCACCTCTGGTCCTACTACTACTGC
TCTGGCTATCCCTATTGCTGCTACCAGCTGCGCTGCTCCTTAACATCCCA
CGAGGGCTATGTGCGCTCCGCAACGAGCCACACCTTGCCTGTCTCTCCAC
GGTTGCCTGCTCTTGCTGATGTACCAGTGTGGGACCGTCGGCAGGGCGTG
CGCAGCACACCCGCCAACCCATACCCCTGACGTACCGGATAAGTTTCTCA
ATGTGTATCCTCTGCAACTGCGTGCTATCTTCCCTACTCAACTCTACGAG
CACGTGGTCTTTTCAACGGACAGCCTTTTCAACGGACAGCCTTACCGCGG
GAAAGGCACAGCAACCCCTCATCTCGGCATAGGCCTTGGAAGGGGAGCAG
GCCCATGTCTTGTCGTAAGCCGAAAACTACGAGCTGGGCACGCTTGCCAG
CCCACGCTTTTACCTCCCACCCTCGCGCGCGGCCGCATACCTGATAAACC
TCAGCAGACAGTATGTCTTTTTGCGTAGCAGGAAGGTATACACATGCCAG
GCCTTCCCAAACCATGGTACGCGGTGGGGATGCGCTGCCTCCAATTTTTA
AGGTCGGGGCAGCCGTGCAGATAACACGTCCGACCTGAGCTCGTAGACCG
CAGCCGGGGGTATCCAGATTCATACAAGTATCCCAAGCTTGTACAACTGT
GTTCCCCAGGTAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7071714..7072526+

>mRNA_S-ischiensis_contig1.1024.1 ID=mRNA_S-ischiensis_contig1.1024.1|Name=mRNA_S-ischiensis_contig1.1024.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=840bp|location=Sequence derived from alignment at S-ischiensis_contig1:7071714..7072526+ (Schizocladia ischiensis KU_0333)
ATGTGCGCTCCGCAACGAGCCACACCTTGCCTGTCTCTCCACGGTTGCCT
GCTCTTGCTGATGTACCAGTGTGGGACCGTCGGCAGGGCGTGCGCAGCAC
ACCCGCCAACCCATACCCCTGACGTACCGGATAAGTTTCTCAATGTGTAT
CCTCTGCAACTGCGTGCTATCTTCCCTACTCAACTCTACGAGCACGTGGT
CTTTTCAACGGACAGCCTTTTCAACGGACAGCCTTACCGCGGGAAAGGCA
CAGCAACCCCTCATCTCGGCATAGGCCTTGGAAGGGGAGCAGGCCCATGT
CTTGTCGTAAGCCGAAAACTACGAGCTGGGCACGCTTGCCAGCCCACGCT
TTTACCTCCCACCCTCGCGCGCGGCCGCATACCTGATAAACCTCAGCAGA
CAGTATGTCTTTTTGCGTAGATGTGCGCTCCGCAACGAGCCACACCTTGC
CTGTCTCTCCACGGTTGCCTGCTCTTGCTGATGTACCAGTGTGGGACCGT
CGGCAGGGCGTGCGCAGCACACCCGCCAACCCATACCCCTGACGTACCGG
ATAAGTTTCTCAATGTGTATCCTCTGCAACTGCGTGCTATCTTCCCTACT
CAACTCTACGAGCACGTGGTCTTTTCAACGGACAGCCTTTTCAACGGACA
GCCTTACCGCGGGAAAGGCACAGCAACCCCTCATCTCGGCATAGGCCTTG
GAAGGGGAGCAGGCCCATGTCTTGTCGTAAGCCGAAAACTACGAGCTGGG
CACGCTTGCCAGCCCACGCTTTTACCTCCCACCCTCGCGCGCGGCCGCAT
ACCTGATAAACCTCAGCAGACAGTATGTCTTTTTGCGTAG
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