mRNA_S-ischiensis_contig1.1021.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1021.1
Unique NamemRNA_S-ischiensis_contig1.1021.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig1.1021.1 vs. uniprot
Match: W4G6I5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G6I5_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.920e-6
Identity = 23/46 (50.00%), Postives = 34/46 (73.91%), Query Frame = -1 
Query:  706 ICQKKCKKQACDIQWCLSRSKYQESRCRFVIDKWKECCEEAKASEE 843
            + Q+ C+++AC IQ CLSR KYQES+C+  ID +K CC +A+  +E
Sbjct:   18 VYQRACRQKACAIQMCLSRHKYQESKCQAEIDAYKACCTKARGRDE 63
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W4G6I5_9STRA7.920e-650.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7042884..7043990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1107
Cds size873
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815374.2290425-CDS-S-ischiensis_contig1:7042883..70437561622815374.2290425-CDS-S-ischiensis_contig1:7042883..7043756Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7042884..7043756 +
1695739665.370069-CDS-S-ischiensis_contig1:7042883..70437561695739665.370069-CDS-S-ischiensis_contig1:7042883..7043756Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7042884..7043756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815374.24115-UTR-S-ischiensis_contig1:7043756..70439901622815374.24115-UTR-S-ischiensis_contig1:7043756..7043990Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7043757..7043990 +
1695739665.378597-UTR-S-ischiensis_contig1:7043756..70439901695739665.378597-UTR-S-ischiensis_contig1:7043756..7043990Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7043757..7043990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1021.1prot_S-ischiensis_contig1.1021.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7042884..7043756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1021.1

>prot_S-ischiensis_contig1.1021.1 ID=prot_S-ischiensis_contig1.1021.1|Name=mRNA_S-ischiensis_contig1.1021.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=291bp
IYVCTHWFVLRHNLACNADSPKSKLRVFNRVYSLWGLPAWNGHRQHCTVV
HSYFCTTSKFLIVSEVRNYSDKYHQARFRSHRCQWVSRSASDTTKPTTCN
TTNRSAEARDNEQTNKHPHKFRPHGQRSLRYGVSSGRPHGGSATPLPLVA
RHKPVQLHAARQSGLQGGSQRLAQVRKNHIPSGRPRRRYVGNGLCTGRDN
KSTQNRLDLYACRNLQLLILPTSNRQTGGYLRLWFLLGCLGLFTTLFPLV
DDEATATFLVLAARQAPLNITRLLLALFLTYIGIGSLFLP*
back to top

mRNA from alignment at S-ischiensis_contig1:7042884..7043990+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1021.1 ID=mRNA_S-ischiensis_contig1.1021.1|Name=mRNA_S-ischiensis_contig1.1021.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1107bp|location=Sequence derived from alignment at S-ischiensis_contig1:7042884..7043990+ (Schizocladia ischiensis KU_0333)
ATATACGTATGTACTCATTGGTTTGTCTTGCGACATAACCTTGCGTGCAA
TGCCGACAGCCCGAAGTCGAAACTTCGAGTCTTTAATAGAGTGTATTCCC
TCTGGGGGCTCCCAGCCTGGAACGGTCATCGCCAGCATTGTACTGTAGTC
CATTCATACTTCTGTACCACCTCGAAGTTCTTGATCGTGTCCGAAGTACG
GAATTACTCTGACAAGTACCATCAGGCAAGGTTCAGAAGCCACAGGTGCC
AGTGGGTGTCCAGGTCTGCGAGTGACACAACAAAACCAACTACGTGCAAC
ACAACAAACAGAAGTGCGGAGGCAAGAGACAACGAACAAACCAACAAGCA
CCCACACAAGTTCAGGCCACACGGGCAGCGGTCACTCCGGTATGGTGTCT
CAAGTGGCCGCCCACATGGGGGAAGCGCCACGCCGCTGCCACTTGTGGCC
CGCCACAAGCCAGTACAGTTGCACGCGGCGAGACAAAGTGGCCTGCAGGG
AGGCAGCCAACGCCTGGCGCAGGTGAGGAAAAACCACATCCCGAGTGGTC
GGCCACGTCGACGGTACGTGGGCAATGGCTTATGCACTGGGCGTGACAAC
AAGTCCACCCAAAATAGGCTTGACCTTTATGCCTGTCGTAATTTACAACT
ACTAATTTTGCCAACAAGCAATCGACAAACGGGAGGATACCTACGGCTTT
GGTTTCTCCTCGGATGCCTTGGCCTCTTCACAACACTCTTTCCACTTGTC
GATGACGAAGCGACAGCGACTTTCCTGGTACTTGCTGCGCGACAGGCACC
ATTGAATATCACACGCTTGCTTCTTGCACTTTTTCTGACATATATCGGCA
TCGGCTCTCTGTTTCTTCCCTGATCCTTCATACACAAAGACCATCGAATA
TGTTTTTCTCTCTTATCTTGGTCACAAAAAGGGGCTGTGGACGGCTGCGC
CACTGCTGCCGGTGTCCTCTTCGCTCTGCCCAGGGATTCCCCTCCAGCCT
CTCGCTCCGGCTGCGGCTTGCCGTGCTTCACAGGCCAGCCCCGTTCCGGT
CCCGTGCGCCCTTGTATTCGGTGCTATTTGCCTCGCAACAGCACGTCTTG
ATTTCCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:7042884..7043990+

>mRNA_S-ischiensis_contig1.1021.1 ID=mRNA_S-ischiensis_contig1.1021.1|Name=mRNA_S-ischiensis_contig1.1021.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1746bp|location=Sequence derived from alignment at S-ischiensis_contig1:7042884..7043990+ (Schizocladia ischiensis KU_0333)
ATATACGTATGTACTCATTGGTTTGTCTTGCGACATAACCTTGCGTGCAA
TGCCGACAGCCCGAAGTCGAAACTTCGAGTCTTTAATAGAGTGTATTCCC
TCTGGGGGCTCCCAGCCTGGAACGGTCATCGCCAGCATTGTACTGTAGTC
CATTCATACTTCTGTACCACCTCGAAGTTCTTGATCGTGTCCGAAGTACG
GAATTACTCTGACAAGTACCATCAGGCAAGGTTCAGAAGCCACAGGTGCC
AGTGGGTGTCCAGGTCTGCGAGTGACACAACAAAACCAACTACGTGCAAC
ACAACAAACAGAAGTGCGGAGGCAAGAGACAACGAACAAACCAACAAGCA
CCCACACAAGTTCAGGCCACACGGGCAGCGGTCACTCCGGTATGGTGTCT
CAAGTGGCCGCCCACATGGGGGAAGCGCCACGCCGCTGCCACTTGTGGCC
CGCCACAAGCCAGTACAGTTGCACGCGGCGAGACAAAGTGGCCTGCAGGG
AGGCAGCCAACGCCTGGCGCAGGTGAGGAAAAACCACATCCCGAGTGGTC
GGCCACGTCGACGGTACGTGGGCAATGGCTTATGCACTGGGCGTGACAAC
AAGTCCACCCAAAATAGGCTTGACCTTTATGCCTGTCGTAATTTACAACT
ACTAATTTTGCCAACAAGCAATCGACAAACGGGAGGATACCTACGGCTTT
GGTTTCTCCTCGGATGCCTTGGCCTCTTCACAACACTCTTTCCACTTGTC
GATGACGAAGCGACAGCGACTTTCCTGGTACTTGCTGCGCGACAGGCACC
ATTGAATATCACACGCTTGCTTCTTGCACTTTTTCTGACATATATCGGCA
TCGGCTCTCTGTTTCTTCCCTGAATATACGTATGTACTCATTGGTTTGTC
TTGCGACATAACCTTGCGTGCAATGCCGACAGCCCGAAGTCGAAACTTCG
AGTCTTTAATAGAGTGTATTCCCTCTGGGGGCTCCCAGCCTGGAACGGTC
ATCGCCAGCATTGTACTGTAGTCCATTCATACTTCTGTACCACCTCGAAG
TTCTTGATCGTGTCCGAAGTACGGAATTACTCTGACAAGTACCATCAGGC
AAGGTTCAGAAGCCACAGGTGCCAGTGGGTGTCCAGGTCTGCGAGTGACA
CAACAAAACCAACTACGTGCAACACAACAAACAGAAGTGCGGAGGCAAGA
GACAACGAACAAACCAACAAGCACCCACACAAGTTCAGGCCACACGGGCA
GCGGTCACTCCGGTATGGTGTCTCAAGTGGCCGCCCACATGGGGGAAGCG
CCACGCCGCTGCCACTTGTGGCCCGCCACAAGCCAGTACAGTTGCACGCG
GCGAGACAAAGTGGCCTGCAGGGAGGCAGCCAACGCCTGGCGCAGGTGAG
GAAAAACCACATCCCGAGTGGTCGGCCACGTCGACGGTACGTGGGCAATG
GCTTATGCACTGGGCGTGACAACAAGTCCACCCAAAATAGGCTTGACCTT
TATGCCTGTCGTAATTTACAACTACTAATTTTGCCAACAAGCAATCGACA
AACGGGAGGATACCTACGGCTTTGGTTTCTCCTCGGATGCCTTGGCCTCT
TCACAACACTCTTTCCACTTGTCGATGACGAAGCGACAGCGACTTTCCTG
GTACTTGCTGCGCGACAGGCACCATTGAATATCACACGCTTGCTTCTTGC
ACTTTTTCTGACATATATCGGCATCGGCTCTCTGTTTCTTCCCTGA
back to top