mRNA_S-ischiensis_contig1.1020.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1020.1
Unique NamemRNA_S-ischiensis_contig1.1020.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7040010..7040504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size495
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1020.1prot_S-ischiensis_contig1.1020.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7040166..7040480 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815374.160825-UTR-S-ischiensis_contig1:7040009..70401651622815374.160825-UTR-S-ischiensis_contig1:7040009..7040165Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7040010..7040165 +
1695739665.3391063-UTR-S-ischiensis_contig1:7040009..70401651695739665.3391063-UTR-S-ischiensis_contig1:7040009..7040165Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7040010..7040165 +
1622815374.1921992-UTR-S-ischiensis_contig1:7040480..70405041622815374.1921992-UTR-S-ischiensis_contig1:7040480..7040504Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7040481..7040504 +
1695739665.3612635-UTR-S-ischiensis_contig1:7040480..70405041695739665.3612635-UTR-S-ischiensis_contig1:7040480..7040504Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7040481..7040504 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815374.1827018-CDS-S-ischiensis_contig1:7040165..70404801622815374.1827018-CDS-S-ischiensis_contig1:7040165..7040480Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7040166..7040480 +
1695739665.3475757-CDS-S-ischiensis_contig1:7040165..70404801695739665.3475757-CDS-S-ischiensis_contig1:7040165..7040480Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7040166..7040480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1020.1

>prot_S-ischiensis_contig1.1020.1 ID=prot_S-ischiensis_contig1.1020.1|Name=mRNA_S-ischiensis_contig1.1020.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=105bp
MTCFVFLLSVWGRPLWQEPRRLARSWNGAPRGLCDGVWARARRGRALAAS
TAPCAGPPSGSKRDAGGVIEYISETRSGSRTYTVMCGCPRAGLKAAAARF
PLRS*
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mRNA from alignment at S-ischiensis_contig1:7040010..7040504+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1020.1 ID=mRNA_S-ischiensis_contig1.1020.1|Name=mRNA_S-ischiensis_contig1.1020.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=495bp|location=Sequence derived from alignment at S-ischiensis_contig1:7040010..7040504+ (Schizocladia ischiensis KU_0333)
GGTACCGCAGGCGGTGCGCTGTGGTGCCGGACGGGTCTGACTGGGCTGGT
GCAGAGAAGAGGGGGGACGGGCCGATAAAAGGCACCCACTCCGGGCCGTG
CATTGGAACGACCGTGCATATCCCAGTGCTGGCCCGGGCCGGCAATTGAT
GTACTTATGACGTGTTTTGTATTCCTGCTGAGTGTATGGGGGCGCCCTCT
CTGGCAAGAGCCTAGGCGCCTGGCCCGGTCGTGGAATGGGGCCCCAAGGG
GCCTGTGCGACGGGGTCTGGGCGCGGGCTCGAAGGGGGAGAGCTCTGGCA
GCGAGCACAGCGCCGTGCGCGGGGCCGCCGAGCGGGAGCAAGCGAGACGC
AGGGGGCGTCATAGAATACATATCTGAGACTCGGTCTGGTTCCCGGACGT
ATACAGTAATGTGTGGATGCCCCCGTGCAGGCCTAAAAGCCGCTGCTGCT
AGATTCCCGCTGCGAAGTTGACGCTGCTGATTGTTAGGTACTGAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7040010..7040504+

>mRNA_S-ischiensis_contig1.1020.1 ID=mRNA_S-ischiensis_contig1.1020.1|Name=mRNA_S-ischiensis_contig1.1020.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=630bp|location=Sequence derived from alignment at S-ischiensis_contig1:7040010..7040504+ (Schizocladia ischiensis KU_0333)
ATGACGTGTTTTGTATTCCTGCTGAGTGTATGGGGGCGCCCTCTCTGGCA
AGAGCCTAGGCGCCTGGCCCGGTCGTGGAATGGGGCCCCAAGGGGCCTGT
GCGACGGGGTCTGGGCGCGGGCTCGAAGGGGGAGAGCTCTGGCAGCGAGC
ACAGCGCCGTGCGCGGGGCCGCCGAGCGGGAGCAAGCGAGACGCAGGGGG
CGTCATAGAATACATATCTGAGACTCGGTCTGGTTCCCGGACGTATACAG
TAATGTGTGGATGCCCCCGTGCAGGCCTAAAAGCCGCTGCTGCTAGATTC
CCGCTGCGAAGTTGAATGACGTGTTTTGTATTCCTGCTGAGTGTATGGGG
GCGCCCTCTCTGGCAAGAGCCTAGGCGCCTGGCCCGGTCGTGGAATGGGG
CCCCAAGGGGCCTGTGCGACGGGGTCTGGGCGCGGGCTCGAAGGGGGAGA
GCTCTGGCAGCGAGCACAGCGCCGTGCGCGGGGCCGCCGAGCGGGAGCAA
GCGAGACGCAGGGGGCGTCATAGAATACATATCTGAGACTCGGTCTGGTT
CCCGGACGTATACAGTAATGTGTGGATGCCCCCGTGCAGGCCTAAAAGCC
GCTGCTGCTAGATTCCCGCTGCGAAGTTGA
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