mRNA_S-ischiensis_contig1.1018.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1018.1
Unique NamemRNA_S-ischiensis_contig1.1018.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7026655..7027877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1044
Cds size801
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1018.1prot_S-ischiensis_contig1.1018.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7027077..7027877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815374.109873-UTR-S-ischiensis_contig1:7026654..70268531622815374.109873-UTR-S-ischiensis_contig1:7026654..7026853Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7026655..7026853 +
1695739665.3093414-UTR-S-ischiensis_contig1:7026654..70268531695739665.3093414-UTR-S-ischiensis_contig1:7026654..7026853Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7026655..7026853 +
1622815374.1208746-UTR-S-ischiensis_contig1:7027032..70270761622815374.1208746-UTR-S-ischiensis_contig1:7027032..7027076Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7027033..7027076 +
1695739665.3178544-UTR-S-ischiensis_contig1:7027032..70270761695739665.3178544-UTR-S-ischiensis_contig1:7027032..7027076Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7027033..7027076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815374.1321125-CDS-S-ischiensis_contig1:7027076..70278771622815374.1321125-CDS-S-ischiensis_contig1:7027076..7027877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7027077..7027877 +
1695739665.3304403-CDS-S-ischiensis_contig1:7027076..70278771695739665.3304403-CDS-S-ischiensis_contig1:7027076..7027877Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7027077..7027877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1018.1

>prot_S-ischiensis_contig1.1018.1 ID=prot_S-ischiensis_contig1.1018.1|Name=mRNA_S-ischiensis_contig1.1018.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=267bp
MGGLSSKLGKKKKSKKGKSKRFQAGGRPADGTQSGPIPAKPRAPVDGRLE
EQVPEYAQSLSVLPDKRGGVEEARYGENGSAAMGRSQSGRGRGEHGENGH
VSHSGLRAHDEYQHRDRDPDRDWDRHRREHRDRSDRHRKERRSRRDSSDR
DRAGSERSSGRSSSHREHRSSRHSGSERSERRERDGSHRRERGDRSSRGD
RSDYDRSRRGGSSHRDLDTSHRASGGRYEEPASHPDELLDRSHRRDRRDR
SRRGSHGGAESSSGRSG
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mRNA from alignment at S-ischiensis_contig1:7026655..7027877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1018.1 ID=mRNA_S-ischiensis_contig1.1018.1|Name=mRNA_S-ischiensis_contig1.1018.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1223bp|location=Sequence derived from alignment at S-ischiensis_contig1:7026655..7027877+ (Schizocladia ischiensis KU_0333)
AGCCGACGTTCGTCGTGTTCTCTGCTGGTGGGACGAGGGGGGGACCAGGC
CGGCCCCCCTTGGCGGTTGAGCCACCGCAAGGGAAGCAGCAGCTGTACGT
GGAGCTCTTGCCTGGCGCTGCAGCTGCAGCTGGCAGCTGGGAGTGAGGCG
TGAAGGGCAGGCGCCGTTCGTACCCCTCCGACCGCTGGCTGCCTGGCAGG
TGGGGCTACAGGGAGGGGCTAACCCTTCCCTTCCTGACACGTGCGCAATG
ATAGCTGTATGTGGCCCGACGCGTGGATGTGTTTGTATTGGGATGATCGT
CCACGGTAGTGTTGCCCACCGATGCTGTCCAGCCGTCATGTTTGCTTACA
GAACGGGGTCGCTGCCTCGTGTGTCCAGGTTGGACTTCTTTGGGCGCAGG
CGGCTGCGTCTTTCCTTGAGCCATGGGTGGCTTGTCTTCCAAGTTGGGTA
AGAAAAAGAAGTCGAAGAAAGGCAAGAGCAAGAGGTTCCAGGCAGGAGGG
AGGCCGGCTGATGGGACACAGTCAGGCCCAATTCCTGCCAAGCCTCGTGC
GCCCGTTGACGGGCGCCTGGAGGAGCAGGTGCCCGAGTACGCCCAGTCGT
TGTCAGTGCTGCCAGACAAGCGTGGGGGTGTTGAGGAGGCTCGTTACGGT
GAGAATGGCAGTGCCGCCATGGGCCGGTCGCAGTCCGGACGCGGCCGTGG
GGAGCACGGTGAGAACGGTCACGTGTCTCACTCCGGGTTGCGGGCGCACG
ACGAGTACCAGCACCGCGACCGGGACCCGGACCGGGACTGGGACAGGCAC
CGGCGGGAACACCGCGATCGCTCGGACCGGCACCGAAAAGAGCGCCGCAG
CCGGAGGGATTCCTCAGACCGCGACCGTGCCGGCAGCGAGCGATCATCTG
GCCGCAGCAGCAGCCACCGGGAGCACCGAAGCAGCAGGCACAGCGGCAGC
GAGCGGTCGGAGCGCCGGGAGCGCGACGGTTCCCACCGCCGGGAGCGTGG
GGACCGGTCGTCCCGGGGAGATCGAAGCGACTACGACCGGAGCCGGCGCG
GGGGCAGCAGCCACCGGGACCTGGACACGAGCCACAGGGCCTCGGGGGGC
AGGTACGAGGAGCCTGCCAGTCACCCGGATGAGCTGCTAGACAGGTCCCA
CCGCCGCGACAGGCGGGACAGGAGCCGGCGCGGCAGCCACGGGGGGGCCG
AAAGCAGCAGCGGGAGGAGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7026655..7027877+

>mRNA_S-ischiensis_contig1.1018.1 ID=mRNA_S-ischiensis_contig1.1018.1|Name=mRNA_S-ischiensis_contig1.1018.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1602bp|location=Sequence derived from alignment at S-ischiensis_contig1:7026655..7027877+ (Schizocladia ischiensis KU_0333)
ATGGGTGGCTTGTCTTCCAAGTTGGGTAAGAAAAAGAAGTCGAAGAAAGG
CAAGAGCAAGAGGTTCCAGGCAGGAGGGAGGCCGGCTGATGGGACACAGT
CAGGCCCAATTCCTGCCAAGCCTCGTGCGCCCGTTGACGGGCGCCTGGAG
GAGCAGGTGCCCGAGTACGCCCAGTCGTTGTCAGTGCTGCCAGACAAGCG
TGGGGGTGTTGAGGAGGCTCGTTACGGTGAGAATGGCAGTGCCGCCATGG
GCCGGTCGCAGTCCGGACGCGGCCGTGGGGAGCACGGTGAGAACGGTCAC
GTGTCTCACTCCGGGTTGCGGGCGCACGACGAGTACCAGCACCGCGACCG
GGACCCGGACCGGGACTGGGACAGGCACCGGCGGGAACACCGCGATCGCT
CGGACCGGCACCGAAAAGAGCGCCGCAGCCGGAGGGATTCCTCAGACCGC
GACCGTGCCGGCAGCGAGCGATCATCTGGCCGCAGCAGCAGCCACCGGGA
GCACCGAAGCAGCAGGCACAGCGGCAGCGAGCGGTCGGAGCGCCGGGAGC
GCGACGGTTCCCACCGCCGGGAGCGTGGGGACCGGTCGTCCCGGGGAGAT
CGAAGCGACTACGACCGGAGCCGGCGCGGGGGCAGCAGCCACCGGGACCT
GGACACGAGCCACAGGGCCTCGGGGGGCAGGTACGAGGAGCCTGCCAGTC
ACCCGGATGAGCTGCTAGACAGGTCCCACCGCCGCGACAGGCGGGACAGG
AGCCGGCGCGGCAGCCACGGGGGGGCCGAAAGCAGCAGCGGGAGGAGCGG
GATGGGTGGCTTGTCTTCCAAGTTGGGTAAGAAAAAGAAGTCGAAGAAAG
GCAAGAGCAAGAGGTTCCAGGCAGGAGGGAGGCCGGCTGATGGGACACAG
TCAGGCCCAATTCCTGCCAAGCCTCGTGCGCCCGTTGACGGGCGCCTGGA
GGAGCAGGTGCCCGAGTACGCCCAGTCGTTGTCAGTGCTGCCAGACAAGC
GTGGGGGTGTTGAGGAGGCTCGTTACGGTGAGAATGGCAGTGCCGCCATG
GGCCGGTCGCAGTCCGGACGCGGCCGTGGGGAGCACGGTGAGAACGGTCA
CGTGTCTCACTCCGGGTTGCGGGCGCACGACGAGTACCAGCACCGCGACC
GGGACCCGGACCGGGACTGGGACAGGCACCGGCGGGAACACCGCGATCGC
TCGGACCGGCACCGAAAAGAGCGCCGCAGCCGGAGGGATTCCTCAGACCG
CGACCGTGCCGGCAGCGAGCGATCATCTGGCCGCAGCAGCAGCCACCGGG
AGCACCGAAGCAGCAGGCACAGCGGCAGCGAGCGGTCGGAGCGCCGGGAG
CGCGACGGTTCCCACCGCCGGGAGCGTGGGGACCGGTCGTCCCGGGGAGA
TCGAAGCGACTACGACCGGAGCCGGCGCGGGGGCAGCAGCCACCGGGACC
TGGACACGAGCCACAGGGCCTCGGGGGGCAGGTACGAGGAGCCTGCCAGT
CACCCGGATGAGCTGCTAGACAGGTCCCACCGCCGCGACAGGCGGGACAG
GAGCCGGCGCGGCAGCCACGGGGGGGCCGAAAGCAGCAGCGGGAGGAGCG
GG
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