mRNA_S-ischiensis_contig1.1017.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1017.1
Unique NamemRNA_S-ischiensis_contig1.1017.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7015630..7016085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815374.0791714-CDS-S-ischiensis_contig1:7015629..70160851622815374.0791714-CDS-S-ischiensis_contig1:7015629..7016085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7015630..7016085 +
1695739665.2976325-CDS-S-ischiensis_contig1:7015629..70160851695739665.2976325-CDS-S-ischiensis_contig1:7015629..7016085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7015630..7016085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1017.1prot_S-ischiensis_contig1.1017.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7015630..7016085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1017.1

>prot_S-ischiensis_contig1.1017.1 ID=prot_S-ischiensis_contig1.1017.1|Name=mRNA_S-ischiensis_contig1.1017.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=152bp
ARAAALAPSGTPSPHRPLARSAADWSRVCQGPRRARPGRPALLEVRIGPA
FRPPPPLPVQLRSRHSMPQQLCGPANAPRVQGVVHRVKTARGHHGPERPR
GPVPRTHAALGALPQCREGGTRRQLRVDGQQRLQQIHGAPPRRLHPPARR
LP
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mRNA from alignment at S-ischiensis_contig1:7015630..7016085+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1017.1 ID=mRNA_S-ischiensis_contig1.1017.1|Name=mRNA_S-ischiensis_contig1.1017.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig1:7015630..7016085+ (Schizocladia ischiensis KU_0333)
GCCCGGGCCGCTGCTCTGGCCCCCAGTGGGACGCCATCCCCACACCGTCC
CCTGGCCCGGAGCGCGGCCGACTGGAGTCGGGTCTGCCAGGGCCCGCGAC
GCGCGCGCCCCGGCCGCCCGGCGCTGCTTGAGGTACGGATCGGCCCCGCC
TTCCGACCGCCACCTCCCCTCCCGGTCCAGCTCCGCTCGCGTCACTCCAT
GCCCCAGCAACTGTGTGGCCCCGCCAATGCACCCAGAGTTCAGGGCGTAG
TCCACCGGGTTAAGACCGCAAGAGGCCACCATGGCCCGGAGCGCCCGCGT
GGCCCGGTCCCGCGTACACACGCGGCACTGGGCGCCCTCCCCCAGTGTCG
TGAGGGGGGCACTCGCCGGCAACTCAGGGTGGACGGCCAGCAGCGCTTGC
AGCAAATCCACGGCGCCCCCCCGCGGCGCCTCCACCCCCCGGCCCGCCGC
CTCCCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7015630..7016085+

>mRNA_S-ischiensis_contig1.1017.1 ID=mRNA_S-ischiensis_contig1.1017.1|Name=mRNA_S-ischiensis_contig1.1017.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=912bp|location=Sequence derived from alignment at S-ischiensis_contig1:7015630..7016085+ (Schizocladia ischiensis KU_0333)
GCCCGGGCCGCTGCTCTGGCCCCCAGTGGGACGCCATCCCCACACCGTCC
CCTGGCCCGGAGCGCGGCCGACTGGAGTCGGGTCTGCCAGGGCCCGCGAC
GCGCGCGCCCCGGCCGCCCGGCGCTGCTTGAGGTACGGATCGGCCCCGCC
TTCCGACCGCCACCTCCCCTCCCGGTCCAGCTCCGCTCGCGTCACTCCAT
GCCCCAGCAACTGTGTGGCCCCGCCAATGCACCCAGAGTTCAGGGCGTAG
TCCACCGGGTTAAGACCGCAAGAGGCCACCATGGCCCGGAGCGCCCGCGT
GGCCCGGTCCCGCGTACACACGCGGCACTGGGCGCCCTCCCCCAGTGTCG
TGAGGGGGGCACTCGCCGGCAACTCAGGGTGGACGGCCAGCAGCGCTTGC
AGCAAATCCACGGCGCCCCCCCGCGGCGCCTCCACCCCCCGGCCCGCCGC
CTCCCTGCCCGGGCCGCTGCTCTGGCCCCCAGTGGGACGCCATCCCCACA
CCGTCCCCTGGCCCGGAGCGCGGCCGACTGGAGTCGGGTCTGCCAGGGCC
CGCGACGCGCGCGCCCCGGCCGCCCGGCGCTGCTTGAGGTACGGATCGGC
CCCGCCTTCCGACCGCCACCTCCCCTCCCGGTCCAGCTCCGCTCGCGTCA
CTCCATGCCCCAGCAACTGTGTGGCCCCGCCAATGCACCCAGAGTTCAGG
GCGTAGTCCACCGGGTTAAGACCGCAAGAGGCCACCATGGCCCGGAGCGC
CCGCGTGGCCCGGTCCCGCGTACACACGCGGCACTGGGCGCCCTCCCCCA
GTGTCGTGAGGGGGGCACTCGCCGGCAACTCAGGGTGGACGGCCAGCAGC
GCTTGCAGCAAATCCACGGCGCCCCCCCGCGGCGCCTCCACCCCCCGGCC
CGCCGCCTCCCT
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