mRNA_S-ischiensis_contig1.1013.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1013.1
Unique NamemRNA_S-ischiensis_contig1.1013.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.1013.1 vs. uniprot
Match: D8LCE2_ECTSI (Nuclear pore complex protein Nup85 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE2_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 7.400e-5
Identity = 38/94 (40.43%), Postives = 45/94 (47.87%), Query Frame = 2 
Query:   20 DALTDFYHMWGLAEIFFLARRRLLSAPLVAWLDTY-MGSWDPQTHEGLRCAEEIVRR--------DPSKRLGLARRLLLHGQT-RRAAELLRGH 271
            D LTDFYH+W LAE F L    L +APL+ WL  Y +   D      L   E +           DP+     A R L+ G   RRAAELLR H
Sbjct:  114 DGLTDFYHVWTLAEAFLLDSIPLPAAPLLRWLKMYSLSGEDEAARSELDETERVALEADAAGGSADPNPAYWDALRSLVVGVAPRRAAELLRSH 207
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCE2_ECTSI7.400e-540.43Nuclear pore complex protein Nup85 n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:7003321..7007138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1013.1prot_S-ischiensis_contig1.1013.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 7003337..7007138 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.9575436-UTR-S-ischiensis_contig1:7003320..70033361622815475.9575436-UTR-S-ischiensis_contig1:7003320..7003336Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7003321..7003336 +
1695739723.4122808-UTR-S-ischiensis_contig1:7003320..70033361695739723.4122808-UTR-S-ischiensis_contig1:7003320..7003336Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 7003321..7003336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.9736626-CDS-S-ischiensis_contig1:7003336..70034011622815475.9736626-CDS-S-ischiensis_contig1:7003336..7003401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7003337..7003401 +
1695739723.4206388-CDS-S-ischiensis_contig1:7003336..70034011695739723.4206388-CDS-S-ischiensis_contig1:7003336..7003401Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7003337..7003401 +
1622815475.988573-CDS-S-ischiensis_contig1:7006918..70071381622815475.988573-CDS-S-ischiensis_contig1:7006918..7007138Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7006919..7007138 +
1695739723.4288054-CDS-S-ischiensis_contig1:7006918..70071381695739723.4288054-CDS-S-ischiensis_contig1:7006918..7007138Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 7006919..7007138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1013.1

>prot_S-ischiensis_contig1.1013.1 ID=prot_S-ischiensis_contig1.1013.1|Name=mRNA_S-ischiensis_contig1.1013.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
MDALTDFYHMWGLAEIFFLARRRLLSAPLVAWLDTYMGSWDPQTHEGLRC
AEEIVRRDPSKRLGLARRLLLHGQTRRAAELLRGHARHGGGGAAE
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mRNA from alignment at S-ischiensis_contig1:7003321..7007138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1013.1 ID=mRNA_S-ischiensis_contig1.1013.1|Name=mRNA_S-ischiensis_contig1.1013.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3818bp|location=Sequence derived from alignment at S-ischiensis_contig1:7003321..7007138+ (Schizocladia ischiensis KU_0333)
CGGATGGGAGGCCGAGATGGATGCCCTCACGGACTTCTACCACATGTGGG
GATTGGCTGAGATATTCTTCTTGGCGCGCAGGCAAGTTCCTTGTTCTGTT
TGTGTGAGAGCTTCCTGCAGTGGCGCCCTGCGCCCTGTGCAATGCTGTTG
CCATCCTTCTTATTTCGTGCGAGGGTGGGAGGGGGGAGGGCACTGGCATT
TATGGTTGATTTTTTTAGTCATGAATTGGCAGGGCTGGCCAGTTCAACCG
TTTTAATTATTATTTTGACCCGTTTCGTTTAACCGATTACCTGGTTTACC
GGCTAGCTCGATAACGCTGGCTTTTACCGAGGAATTGGCAAATAATGGCA
TTTTTGGCAAAGCCCAGGAATTGGCAACAAGTGCCAAGAACGGCAATGTG
CAGTGCAACGCCTACCCGATGCGGCCAATATATAGAGGTAGATGTCCCTA
TTAAGGGACACGCACCTATTAAGGGACACCGTCCCAGAACTTCATCTAAA
ATGGCGAATACGACGATTCAGGGGATGCGGATTTTTGCTCTACGTAGAGC
ATGAGTTGCGGGTTCTGCCGATGCAAACTACATGGCTGGAGGTGTCGTGG
TCGCGGAGTTATGGCACTTTGAAGCCCGGGCTGTGCACGTCGGGGTCGCG
AAGGCCCTCCGCAAAGAGGACGAAAGAAAATGATTACGACGCGGTGCGGA
GCACGGAGCTTGTTGGGGGTGTAGAGGGCCTGTCTATGAGCCTAGATGTG
CATGCGCACGCCGCGAGACGTCGTGGATGCGGAGCTTTGCCCCGCGCACT
GCGCCTGAGGACTGCACGATCGCCCCCAAACTGCCTCCGACCCGGCGGGT
TTACCCTCAACCCGGCGGGTTTTGTCGTAAAAAGACAGTACCTTTCAGTG
CGCAATCGCAATTTTCTCGCGACCTGCATCGAATTGGTGGGTGCGGATTG
GCCAATACGAACCCTCCGACATCAGCTTTCGGCACAAACAAAAGCCAGCT
CTCAACTCGCCGCGGTTCAACCGTCCACCTCGCCGGCTCCAGGGGGCGGG
TTGGCGACCACGCAACAAACCTCACGTATCATGGGAACGACGGCGATACA
GGCGGCACGGTTTGTGCATCCACAGACAGTGCCACTCTCCAACGCAAAAA
ACCGCATGCCACGGACTCGTTGTCGTGGTTTCAAACCAGTCCTTTTGGGG
GCGTCCCTTAATAGGGACATTGGCAGTTTCCGGCGGTTTGTTTTTTTTGG
CCGACCGCCGATTGGCTGGGGCTGTCGCTGTGGTACCGTTGAGATCCGGC
ACTCGAGCCAACAATGAAAAGTGTAGGTGCGCGAGCAGACTCGCCCGTGA
AAAAAAAAAACTCAAACGGTCCATTTTTGCAATTTTTATGCCAATTCCCG
CGACGCGTCCCTTAAGTGTCCCTTAATAGGGACATTTACCTCTACTCGTA
TATATATAAACGTACCGGTTAGTATATATATGCACGATTTTCAAGGAGAA
ACACAAAAACTGGTGCCCGGAACTCGCAAAAGTAGGATCACCTCTATTTC
CCACTCACTTCTTCTCTTCTTACACAAAAACTGGTATGGCTTCGGTCAGT
TGTTTGATTAGACCAGTTAAATGAACTAACTGGTTTTTAACTGACTTCGG
TTCACAACTCTATTTGACTTGCTGTAGATGACGGAAGATAACAACCCCGC
GCTAGATGCACCCCCCCCCCTTAGAAAACAACCCCGGTTGCTAAAATATC
CAGCTGGCAAACTTATCAACTGGGGTTACGTAAGGTAACAACCCCCCCTG
CGTCACCCGGCCGGGGCCATGAAACTTGCTAGGGAGCCTGAGATGAGGCG
GGCCGAGCATGAGTGCGCCAGGCAACTTTGAACGCGCCGGCACTGCGGCG
GCACACACACAATTGCCAGACGGTTTTTGCACGGTTTCTGTTTTGGTCCG
AAACCGTGCCGTTACGGTCGTGTAGGATGTTGCGGGGATCACAGGGGGAG
AGGGGCCGGACCACCAAGTGTGAGGTGTGCGTAGAGGAGGATGAGACAGT
GCAACACGTCATGCTTGAGTGTCCCCACTGCAGTGCCGCCTGGATGGCTC
CACACGCTACTCTCTCCGAATGTACCTGCACTGACACCCATACCTGTAGC
TACGAAAGCTTTAACAGTGCACCCGAAGGAAAGCAGATTACATCATCTCA
GGTGAGACTGCGCTGTGGTCAGAGGAAACCCAGGGTAAGGTGAAGTCTGC
GGTTCAAGATTTTCGTGCGTCTGTGTGGTGTTCGCGGTTGGACCGAGCAG
GTAGGGTGGATGATGACCTTGGATATCCCCCCTCCATGCCCCGGCATGGC
GGGGGACCCCCCCTTCTCTGCTGAACCTCGGTCCGGCAGGGGAGGGCCCC
CCCCACCCTGACTCTCGCGAGTCAGGGGAGGGGGGGGTATGTACCTGACC
ACTCCTCTGCCATGAGCGGGGGGGTGGTCCATCCCTCCCACCCTGGCTTT
CCAGGGGCGGGAGGGAGATTGCTCCATCGTCAACGGCACGCGGTCAATGG
TCTCGGGACACCGCAAGCACAACATGAGCACCTATAGTATGACCCCCGGA
GAGGGACGAGCATTCTCTTTCCTGTTGTCCTATTTTAGCCATGGACCCCG
GGTTTGACCCATGTTTTAGTTTTTGCTTGGGACGAGTTGTGTTGTAGTCC
AGCACCTCAGGACTGCGGGAAGTGCAACGTGAGCATGTTAAAATGCTTCC
AAGTATACTCTACGTGTTGTTGTTATGGCCGTGCTCAGGCAGTTTTCCTC
ACTATCGCATTGACCCGGCCCTGGAACAAGGCGCGTGGTCAGCCGTCTCC
CGACTTGGGCAAGCACTGTGAGTACCTCCTAGTACAATCCGTCACAGCCA
CTGGGGCGTTTCGAGAGGCCCAGAGCTATGTGCGAATGGCGGGACAGAGA
GGACCAGTTCTCGCTTTTTGCAGTTCCTTGTTTCGAGTTGGTAAACATTG
CTCGGGTCTCGGAAGTGTCGGCGCCGTCAATGCTCTCTCAGTAGGTGGTA
CGTGCAAGTGCAGTAGACTACTTTCAGCAATTTGAAGCCCCTCCACACGC
GCGCACACACACACATGTACGTGTGCTGCTTGCTTATCGTAGTCCCGAGA
CCATTGAGACTATTGACCACGCGCTTCAAACGAGACGGCGCGGGCCCCCT
CCCTCCCCCGGCAAGAGCCAGAGCGGGAGGAGGGGGGCACTTGTACGCGG
ACAAACCGACTGACACACAAACGGTGAACGAAAACACCTTTTTCTGGAGG
GGCTTCCGTGGGTGGGGCCCTGAACTCGCGTATGTAGTGACACCTCTTCT
TTACCACTCGCTTGTTTTTCTTCTAGCAAAAAAACTTTGGCTGTTCTTTC
TTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTCGTTTTCATCGAGTC
AGCCGACCCTCACCCTCTCACCCTTTTGCTTGGCTTGCGCTGCCGCCGCC
GCCGTCACCCTGGCCCCGGCCCGCCCGGCCCGCCCGCTCACGTACCCACC
TACCTGCCCGCCCCGCCCCGCCACGCACACACACACACACACACACAGGC
GGCTGCTTTCGGCCCCCCTGGTGGCGTGGCTCGACACCTACATGGGTTCG
TGGGACCCCCAGACACACGAGGGCCTCCGGTGCGCCGAGGAGATTGTCCG
CAGAGACCCCTCCAAGCGCCTGGGCCTCGCCCGGCGGCTGCTGCTCCACG
GCCAGACGCGTCGGGCCGCTGAGCTCCTGCGGGGCCACGCCCGCCACGGC
GGGGGGGGCGCGGCGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:7003321..7007138+

>mRNA_S-ischiensis_contig1.1013.1 ID=mRNA_S-ischiensis_contig1.1013.1|Name=mRNA_S-ischiensis_contig1.1013.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig1:7003321..7007138+ (Schizocladia ischiensis KU_0333)
ATGGATGCCCTCACGGACTTCTACCACATGTGGGGATTGGCTGAGATATT
CTTCTTGGCGCGCAGATGGATGCCCTCACGGACTTCTACCACATGTGGGG
ATTGGCTGAGATATTCTTCTTGGCGCGCAGGCGGCTGCTTTCGGCCCCCC
TGGTGGCGTGGCTCGACACCTACATGGGTTCGTGGGACCCCCAGACACAC
GAGGGCCTCCGGTGCGCCGAGGAGATTGTCCGCAGAGACCCCTCCAAGCG
CCTGGGCCTCGCCCGGCGGCTGCTGCTCCACGGCCAGACGCGTCGGGCCG
CTGAGCTCCTGCGGGGCCACGCCCGCCACGGCGGGGGGGGCGCGGCGGAG
GCGGCTGCTTTCGGCCCCCCTGGTGGCGTGGCTCGACACCTACATGGGTT
CGTGGGACCCCCAGACACACGAGGGCCTCCGGTGCGCCGAGGAGATTGTC
CGCAGAGACCCCTCCAAGCGCCTGGGCCTCGCCCGGCGGCTGCTGCTCCA
CGGCCAGACGCGTCGGGCCGCTGAGCTCCTGCGGGGCCACGCCCGCCACG
GCGGGGGGGGCGCGGCGGAG
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