mRNA_S-ischiensis_contig1.101.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.101.1
Unique NamemRNA_S-ischiensis_contig1.101.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:692202..698180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size582
Cds size402
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.101.1prot_S-ischiensis_contig1.101.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 692202..698001 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815343.9904158-CDS-S-ischiensis_contig1:692201..6923431622815343.9904158-CDS-S-ischiensis_contig1:692201..692343Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 692202..692343 -
1695739647.8200018-CDS-S-ischiensis_contig1:692201..6923431695739647.8200018-CDS-S-ischiensis_contig1:692201..692343Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 692202..692343 -
1622815344.0027382-CDS-S-ischiensis_contig1:695524..6956171622815344.0027382-CDS-S-ischiensis_contig1:695524..695617Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 695525..695617 -
1695739647.8459911-CDS-S-ischiensis_contig1:695524..6956171695739647.8459911-CDS-S-ischiensis_contig1:695524..695617Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 695525..695617 -
1622815344.0146542-CDS-S-ischiensis_contig1:697716..6978031622815344.0146542-CDS-S-ischiensis_contig1:697716..697803Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 697717..697803 -
1695739647.8864768-CDS-S-ischiensis_contig1:697716..6978031695739647.8864768-CDS-S-ischiensis_contig1:697716..697803Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 697717..697803 -
1622815344.024836-CDS-S-ischiensis_contig1:697921..6980011622815344.024836-CDS-S-ischiensis_contig1:697921..698001Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 697922..698001 -
1695739647.897276-CDS-S-ischiensis_contig1:697921..6980011695739647.897276-CDS-S-ischiensis_contig1:697921..698001Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 697922..698001 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815344.0337148-UTR-S-ischiensis_contig1:698001..6981801622815344.0337148-UTR-S-ischiensis_contig1:698001..698180Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 698002..698180 -
1695739647.9540136-UTR-S-ischiensis_contig1:698001..6981801695739647.9540136-UTR-S-ischiensis_contig1:698001..698180Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 698002..698180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.101.1

>prot_S-ischiensis_contig1.101.1 ID=prot_S-ischiensis_contig1.101.1|Name=mRNA_S-ischiensis_contig1.101.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=134bp
MSGLRGRASNGFPPAGGYGVLAYATPRRSVRSGSRSRSRASSTTTSSRSS
SRSRSRDKGRRRRGRSSRSRSHSHSKSKSRSSPPSSRSRSRSRDNKYAAR
RRSYVHRHAPVAGSGGSGGGGFGGGGKDYAAMAQ
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mRNA from alignment at S-ischiensis_contig1:692202..698180-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.101.1 ID=mRNA_S-ischiensis_contig1.101.1|Name=mRNA_S-ischiensis_contig1.101.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5979bp|location=Sequence derived from alignment at S-ischiensis_contig1:692202..698180- (Schizocladia ischiensis KU_0333)
TGTACAAACAGGCGGCTTGGGCCCCACCCAGGGACCCCGAAGTCCCAAGC
TGCGCCCAGTGCCTACGGGGAGGCCAGCGATGGGGCCTAGCCCCTAGGCT
GCCCGCAGCTCCTTCCTGAACGGGAGGGGCGGGGACGCCTGGGGTTCAGG
CGCGCGCGGGTACCTTAGAAGATACGAAAATGAGCGGGCTGCGGGGCCGT
GCGTCGAATGGGTTTCCCCCCGCGGGGGGCTACGGCGTGCTTGCCTACGC
AACCCCAAGGTGCGTTGGTTTGGCTCTTTGTTGACCCTATTAGCGCCCGA
TCTATGGGCCTCTGCCCGCGCCCTTGTTTGACCAGCCGCTTTCCCGCTGC
TACCCGCGTTCTTCACTGTTCCACCAGGCGGTCCGTACGCTCTGGAAGCC
GCTCCCGAAGCCGGGCAAGCAGCACCACCACAAGCAGCCGCAGCTCCAGT
CGGAGCCGCAGCCGGTGAGCGGAGACGACAGACACGGCGCCCTGTACCCG
AACAGCGGGACGGCAGCGCCGCGGAACCGGCTTAGTGGGGGATGATACGC
CGATGGGAGGCTGCCTGTCGATTTAATTATACCAGAGAGTATCCCGAAGG
ATCAAGGGCTACGCGCTCCATGCGGCTGGGGGGGGGGGGGCTGGCTGTGA
AACCGACGAGAGCCGAAGGGTGTCCTTGCCTGAACGCCCGTGTTAAGGGG
GCGAATGAGATTTTTCTTCGCGAATTTTCCGGCAGACGTGCCTGTCTAAA
TTTATTTTTACCCCCTGCAGCCTTTGCTGGCGTCAGCTTGACGTGCATCA
CGCACGTGCACAGAACCAGCGAGAGCGTCTCGATCAGGGCTGCTATGTGC
CCCCACGGGCGGGGCGGTTTGCGTACGATAGTCTGGTGACGGCTGGTCCG
TTGGGGCCCAACCTGTGACGTGGGGGTACGCTGCAGTCATTTTGTGCTGC
CTCCCTATCGTGCGGCATTTCTTGTCGTGTCTCGCGCACGCGGCGCGCCG
TTTGTCCTTTGGTCTGAAAACCGTTTGGAACGCTCGCAGACAAATCCCGC
CATTTTCCCTTCGGGCCGAGGAAACCCGGGGGTTGTTAAAATTTATCAGG
CTTTGGTATCGACCTTAACCAATCAACGACCGGAACGAGCAGAAACAGGA
CCCCAAAATCCAGGGCGCGGAACGGGGCTTTGGTGTCGGGGCGCAAGGCA
AGGTTCCGACACCCTCTGCCCTTTTTATCAGGACACCAAATATGTATGCT
CACGCTGTGCTTGCCGTAGTCAGTCCCGAGACCATTGCCCACGCGCCGTC
GACGACGGAGCATTGATGAGGGAGGGACTGGCCGGCTGGCCGAGATACAA
TACCCCCCCGAACAACAGCGACAACAAATATCACAAGTGGATTGCTATGC
GTTGCGTGCCGCCACAAGAACGTTTCGGGCACCTTGCGTGCAAGTACTTG
TCCCGCGTGGACTTTGTGCTGGCTGTCCTACCATGCCGCCGCCTGTTGTG
TACGAGCGGCACCATAGATACAGCGGGGGGCACCCCCCTCCCGGCTTTCC
TTCCAGATCAGAAGTCCCTGGGGGTAGGAATTCGTGAGGTCTGTGTGAAT
GTGTGTGTGCGCGCGCCCCACGGGGCGGGGGGGGGGGTCTCCGTGTGTTT
GTTTGTGTGCGTGAGCGTGCGTGCGTGCGCGTGCGAGTGGTTTTGCGCGG
GCTTTTTTAGTTTTTTTTTTTTTGGCCTGCTGTGATGTGTGTGAGCACCG
TGCACGTACGAATCACAGCGCTTCCTGCGCCTGTGCTTGCAAGTACCCGG
CTCTGTTGCTGGTACTGGTACGGTACAGCCGCGAGTTTTGGTAGAGAGCT
GCGCGTTTCCCCCTCTGTTTTCTTCTGTGGTCACGCCCTGGGAGGGAGGC
CCGAGGAAATTTCGTCTCCGCGGAAAAATATTGTACTTCGTAGTCCCTTG
GAGGACGATAGTATTATTCTACGGTCAGCTGCAGGAGCGTATCCTAGAGC
AGCGAGCGAGGGATCGAAAGAGGGTGTGATGTGTTGTGACGTGACGCGAT
GTGATGTGCACTCTACTTTCCTGTAGTTTGACGTCACATCACATCACGTC
ATTTCCCACCATCCTCACATGGTTATATGATGGACGGGACGACAGACAGG
CCTTCCTTATACTGTCTCTATATATATTCGAGTGTGAACTTCACAGGGAC
ACTGACGGTTCAACCCTGCTTCCCCCCACCCCCTTCGTGTACCCTCCTGC
CCCCCACTCCTGGGGTGCATGTGCCTCCTGCACTCTTTTTGTTTTGTTTT
CGCATCCTCTTGGGCGCTTGTGTCCCTTTTCTTCATCTTCTTTCTCCTGC
TCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCC
TCCTCCGTGTCTTTGTCCTTGTGTGTGTATATATGTACACGTGTACGTTT
GTTTTCTTTTTTGTGGGGGCGGGGGGCTCTGCGGTGCACACGCCGACGGC
GGGCGCCCTGCCTTTGACGACGGCAATGGCGACACACTACGGCGTCGGGC
ACTACGATTGCAGGGACAAGGGCCGCCGCCGCAGGGGCCGGTCGTCGCGT
TCGCGCTCACATTCCCACTCCAAGTCCAAGTCAAGGTCCTCACCCCCCTC
TTCAAGGTATCTCGTGTTGGTGGTGGTGGTGGTGGTGGTAGCTGTAGTTG
TGGTTGGCTGTGGCCAGTGCTACGTGAGGATGAACCATGGGCAGAACAGT
CCAAGCACCAAGCGGCCATCCCGAAAAAAATAATAATAACTTGTGGACTT
TCCTGATGCGCGATAGTCTTGCGGACTTTCCCGATGAATACACTTTCCGA
CCAGAGGTACTGTTGTTTATGTACTTCGAAGTACTGGTATGTACTCAATT
CATTGTTTGTGTTGACCGACTTGAAGAACCAGACATAACGAAGGGCCCAA
TGCATGGTACAAGTATCAGTGACAGATGTGGTGCGAGACATGCCGCGATT
CGCTCTTTGTGCGATACGAGAAACTGCTGGGGGCATCGTGCTGGGCATTT
GTTGTTGGCAGCGGCGCGAACCCTACTTTTTGTTTTTTTCTTGTCCTCAG
GGCCCGTTGTCTTGCCCGTCGCTGGGTACTGAACCGAGTACATGTGTACT
GTATCGTGCGCGAATGAATTTAGCAGCTGCGATGCCCGTGTTCATGTTTG
TTCAGGCTTTTCTGCAGCTGTACTCTTCTTCGACTTTGCCTTTTTCCAAC
GCGTTCATCCTCCTTTTTTTTTGCTTGTGTGTGTGGTGGTGTTTCGCCCC
GCTCTGTCTGGGTGTTGTTTGTCGTTGTTGTTGTGGTTGTGGAGCTGCGT
TAGCCTGGAGATGTTGGCCGCACTGCTTCATAGTGACACATGCGTGTGCG
TGCGCACGTGTGTGTGTGCATCGGCGTGTGTCATCGTATACGTAGCCCGC
GTGTGTTTGGGCCACGCTGTGGGTGCACGTGTGTGTGTGTGCCCGCGTGT
GTGCGTGCGTGCGCGCGCGCGTGTGTGTCACCGTGCTGCAGTAGCTCAGA
GCCCGTCGAGCACGCTGCGTGTCTGCAGTTGTGCGCCGTGTGCATGTGAA
AACATTGGAGTGTGTGTGTGCGTGCGCGTGTGCGTGTTTGTTGCGCCGCA
TTATCCGCGGGCCGTTCGGCAACTCTGCGTGTGTGTGTGTGTGTGTGTGT
GTGTATATGTGTTTTCTTTCAGGCCGCCACCATGGCCCCGAGACCACTTG
TCGCATCTGCTTCCAACCGGTGTAAGTAGTGCTCGAGTACAGTACTTAGT
AGTAGCACGTTCGCCAGGTCCTCCACTAGCGCCAAGGCAAGGGCTGGGGC
CGTTTTTACATGGGCGAGCTTTGCACGCGCAGTTTGGTGTCCGCGCGAGG
AAAAGAGTTAATAGGTTCAGTTGGTTTTTATCCACGATCGCCGCTGTCAC
CGAGCACGCTTTAATCCTTGCGCCGAACTGGTTAGCGCAGCCATTGTCCT
AGCCGGTGTCTGCTCTTCGATGTCATGTTATGTTATGTTATGTTATGTCT
AACTACTGTACACTAGAGATAACATCATATTAGTCACATCACGTCTTCGT
TCGAGAACGGCGCGCGGACCTCGCCTAGCGGTAGTGCTGCTGTCATGGAG
CACGCACATGTCATGCGGGATGCCACCTCACGCGATGTGGCTATGTGTGC
GGTGCTGGACCGCAGTTTGACGTGACGTCGCATCACATCACATCACAGGG
GAAGTGGCATACCGATGTGATGTGGTTTGTATCTCTAATGGACTGCAGTT
TGACGCCACGTCACATCACATCGCATCGCATCACATCACATGGGAAGTGG
CGTACCGATGTCATGTGATGTGTAACTCTAATGGACTGTAGTTTGACATC
ACGTCACATCACATCACATCGCATGGGAAGTGGCATACCGATGTGATGTG
ATGTGTACGAGCACTCTATTGGACTGTAGTTTGATGTCACGTCACGTCAC
ATCACATCACATGGGAAGTGGCATACCGATGTGATGTGCTGTGATGTGTG
CTCTAATGGACTGTAGTTTCGCGTCGCGTCACGTCACAGCACGTGATGTC
ACGTTCGTGTACTGATATACCGTGCTGCGCTGTACTGAAGTTTGGATCAC
GCCGCATCGCGTCACATCACATCACATCACATGGGAAAGTGGCGTACTGA
TGTGATGTCCTGTCTGCTCTATTGTACCGTAGTTTGGCATCACGCCGCAT
CGCATCACGCCAGCGCGCCGATATATATTGTCACCTTGTGCTTGCCGTAG
TCCCCAGACCATTGCATTGACCACATGTATATATAAATCGTATATATGTC
TAGGCGAGTGGTCTACCGACGGCTCTCGCGAGCCCAAGGTCGCGAGTTCG
ATTCCCAGTGTGGGGTCGATTTTCCGCGAAAAATGGACCCCTCCCGAAAC
ACGCGCAAAATTGAAAATATCATGGGCCGTACCAGCTTGTCGGCCTCGGG
CCTAATGGCAAAGTCGGGACCGGCGCCCGCCTGCCCGCTGAAAACCGGGG
ATGCTCCGGCGAGGCGTAGTAGGGCTGCATGGCCAATGGCCGCAGGCTAC
CCCGTATGGGGACCGACCAGGGTCAGCACGGAGTATACTGGCCCGAGTCG
GTGGCAAGCACAGGGTGGGATCCCCATCCGCCATGAGTACACATACATGT
ACTCGCATCGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCACGCGCCT
CGGCTCGGTCGAGACTATATTGCTGTATTTATCGCTCTGTAGTTTGACAT
GGCATCACATTGAAATAGTCAGCGCGCTCTTATGCCGCACTGTACTGGTA
TATACTGCCGGTTGACCACATACTACACCACACCACACCACACGCCCGCA
CACCGCTCTGCCCCCTGCCTGACACCTGGGGCCCCACCCTCCATACCCGA
CCCCACATCCCCCCGACGGATTTTCTTTGATGTGATAGCCACTAGTACGA
GAACACCCCATTCTTAAATGGGAAAACCACTGCTGTAGTACGAGAACACT
CAATCTCACACGTGCGATTGTACCTCGCTACAATTTTGGCATGAAGATAA
ACAAGCGAGTGGGAAAGAAGAGGTGCTCCTACTTACGCAAGTTCAGGGGC
CCCATCCCCGGAAGCCCGTCTTTTCACCCGCCTTCACTCGCAGGGCAGAT
AGAGCAGAAAACAAAGAAATTTATACTTGTGAATCACTCCCCGACATATC
GGCCTTGACATCTCACCTCTGCACGCCCCCTCCCCCCACCCTGGCCTGCT
GCCGCACCCTGGATGTCACCGCCGCCCCGGGCCGCAGGAGCAGATCGCGG
TCACGGGACAACAAATACGCCGCCCGCCGCCGTTCGTACGTGCACAGGCA
TGCCCCGGTGGCGGGCTCGGGCGGGAGCGGCGGCGGGGGGTTCGGGGGCG
GGGGCAAGGACTACGCGGCGATGGCCCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:692202..698180-

>mRNA_S-ischiensis_contig1.101.1 ID=mRNA_S-ischiensis_contig1.101.1|Name=mRNA_S-ischiensis_contig1.101.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig1:692202..698180- (Schizocladia ischiensis KU_0333)
ATGAGCGGGCTGCGGGGCCGTGCGTCGAATGGGTTTCCCCCCGCGGGGGG
CTACGGCGTGCTTGCCTACGCAACCCCAAGATGAGCGGGCTGCGGGGCCG
TGCGTCGAATGGGTTTCCCCCCGCGGGGGGCTACGGCGTGCTTGCCTACG
CAACCCCAAGGCGGTCCGTACGCTCTGGAAGCCGCTCCCGAAGCCGGGCA
AGCAGCACCACCACAAGCAGCCGCAGCTCCAGTCGGAGCCGCAGCCGGCG
GTCCGTACGCTCTGGAAGCCGCTCCCGAAGCCGGGCAAGCAGCACCACCA
CAAGCAGCCGCAGCTCCAGTCGGAGCCGCAGCCGGGACAAGGGCCGCCGC
CGCAGGGGCCGGTCGTCGCGTTCGCGCTCACATTCCCACTCCAAGTCCAA
GTCAAGGTCCTCACCCCCCTCTTCAAGGGACAAGGGCCGCCGCCGCAGGG
GCCGGTCGTCGCGTTCGCGCTCACATTCCCACTCCAAGTCCAAGTCAAGG
TCCTCACCCCCCTCTTCAAGGAGCAGATCGCGGTCACGGGACAACAAATA
CGCCGCCCGCCGCCGTTCGTACGTGCACAGGCATGCCCCGGTGGCGGGCT
CGGGCGGGAGCGGCGGCGGGGGGTTCGGGGGCGGGGGCAAGGACTACGCG
GCGATGGCCCAGGAGCAGATCGCGGTCACGGGACAACAAATACGCCGCCC
GCCGCCGTTCGTACGTGCACAGGCATGCCCCGGTGGCGGGCTCGGGCGGG
AGCGGCGGCGGGGGGTTCGGGGGCGGGGGCAAGGACTACGCGGCGATGGC
CCAG
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