mRNA_S-ischiensis_contig1.1002.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1002.1
Unique NamemRNA_S-ischiensis_contig1.1002.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6939144..6940533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size996
Cds size993
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1002.1prot_S-ischiensis_contig1.1002.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 6939144..6940531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.1190677-CDS-S-ischiensis_contig1:6939143..69392291622815358.1190677-CDS-S-ischiensis_contig1:6939143..6939229Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6939144..6939229 +
1695739658.6777709-CDS-S-ischiensis_contig1:6939143..69392291695739658.6777709-CDS-S-ischiensis_contig1:6939143..6939229Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6939144..6939229 +
1622815358.133343-CDS-S-ischiensis_contig1:6939327..69399071622815358.133343-CDS-S-ischiensis_contig1:6939327..6939907Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6939328..6939907 +
1695739658.689335-CDS-S-ischiensis_contig1:6939327..69399071695739658.689335-CDS-S-ischiensis_contig1:6939327..6939907Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6939328..6939907 +
1622815358.1447756-CDS-S-ischiensis_contig1:6940204..69405311622815358.1447756-CDS-S-ischiensis_contig1:6940204..6940531Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6940205..6940531 +
1695739658.6976092-CDS-S-ischiensis_contig1:6940204..69405311695739658.6976092-CDS-S-ischiensis_contig1:6940204..6940531Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6940205..6940531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1002.1

>prot_S-ischiensis_contig1.1002.1 ID=prot_S-ischiensis_contig1.1002.1|Name=mRNA_S-ischiensis_contig1.1002.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=331bp
RRAASLERPLGLAPGSMTEPRGISRLKTRLTSAKDSRKHRGGPCKACSFS
GGSPFGQGRACLQCGRNCTRAATAAPASQERSRRRKTFQVAPTITQGIQQ
PRSSMAKHVSPTGGPLGSPAAAEADGVAAPAGVTPLEAAVGQAIWPVKSD
SDLGEMDASHPWILGVDSGSASEEWASMERRRQLWLDSGSLSQQSIHWGA
GKESNREGFGKDDFDTHLGGDTGVPPGEQHSPTALLATIAEVSRSALART
HAARREEPPGQGARWPPATVGHGGGGLAVQADGRVVLPWYRRPVNPPPAL
SLESLSLAAAPLWETSAPSRGGQAGSSALEK
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mRNA from alignment at S-ischiensis_contig1:6939144..6940533+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1002.1 ID=mRNA_S-ischiensis_contig1.1002.1|Name=mRNA_S-ischiensis_contig1.1002.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1390bp|location=Sequence derived from alignment at S-ischiensis_contig1:6939144..6940533+ (Schizocladia ischiensis KU_0333)
CGGAGGGCGGCGAGCCTCGAACGCCCGCTGGGCCTTGCGCCGGGGAGCAT
GACCGAGCCAAGAGGGATCTCTCGTCTTAAAACCAGGTGCTTTCCAGTTC
TGGATAATCTTCTGGTTGTGCGTCAGGGCAGTTCAAAAATCCTCTAGTAC
TAACTTTCGTTGCCCGCTCGATACACCGTTGCAGGCTCACCAGCGCCAAG
GACTCCCGGAAACATCGTGGTGGTCCGTGCAAGGCATGTTCTTTCAGTGG
GGGCTCCCCTTTTGGACAAGGTCGCGCCTGCTTGCAGTGTGGCCGGAACT
GCACGCGTGCAGCAACTGCAGCTCCGGCTAGCCAGGAACGCTCCAGGCGG
CGGAAGACCTTCCAAGTCGCCCCTACCATTACGCAGGGGATCCAACAGCC
TCGGTCCTCCATGGCCAAGCATGTATCGCCCACCGGCGGCCCTTTGGGAT
CACCCGCAGCTGCGGAGGCCGACGGCGTGGCCGCTCCAGCTGGTGTCACG
CCGCTGGAAGCTGCAGTGGGACAGGCCATCTGGCCTGTGAAATCAGATTC
GGACCTGGGTGAGATGGATGCGTCGCATCCATGGATCCTGGGCGTTGACA
GCGGGTCTGCCAGCGAGGAATGGGCCAGCATGGAGCGTCGCCGGCAGCTG
TGGCTGGACAGCGGGTCGCTGTCACAGCAAAGTATCCACTGGGGGGCGGG
CAAGGAGTCCAACAGGGAGGGCTTTGGAAAAGACGATTTTGACACCCACC
TTGGTGGCGACACGGTGAGCACAGCAGGCACTGTGGAACATGCAGCTGCC
TTTGGCAGTGTTGGGTTCGGTATCGACGCGATTTGATGCATTTGCTACTA
CGAAGTACTTCGAAGTAGACCATATATTTTGACGTTTGGGTTACGCTTTA
CTTGCCGTCCCAAGTTGCCCGGGTGCTTCCATGACCTGGGTTTTGTAATG
AGTCAGCCGTCACCAGGAGCAGGTCCCTCCCGGGCCTTACAAGTAAAATG
CTGACTCATATCATGTGATCCTTCTGAAACCTTTGCGGCCGCCGCCACAC
CGATACCGCAGGGAGTGCCGCCAGGAGAACAGCATTCGCCCACTGCCCTG
CTCGCCACCATTGCAGAGGTATCCCGCAGCGCCCTCGCACGTACCCACGC
CGCAAGGAGGGAAGAGCCACCGGGTCAGGGCGCACGGTGGCCCCCCGCCA
CCGTAGGCCACGGGGGGGGGGGGCTGGCTGTGCAGGCAGACGGGAGGGTT
GTCCTGCCCTGGTACCGCCGCCCGGTCAACCCGCCGCCGGCCCTAAGCCT
TGAATCCCTGTCGCTTGCGGCGGCGCCGCTGTGGGAGACCTCGGCGCCCA
GTCGGGGCGGACAGGCAGGGAGTTCTGCCTTGGAGAAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:6939144..6940533+

>mRNA_S-ischiensis_contig1.1002.1 ID=mRNA_S-ischiensis_contig1.1002.1|Name=mRNA_S-ischiensis_contig1.1002.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1986bp|location=Sequence derived from alignment at S-ischiensis_contig1:6939144..6940533+ (Schizocladia ischiensis KU_0333)
CGGAGGGCGGCGAGCCTCGAACGCCCGCTGGGCCTTGCGCCGGGGAGCAT
GACCGAGCCAAGAGGGATCTCTCGTCTTAAAACCAGCGGAGGGCGGCGAG
CCTCGAACGCCCGCTGGGCCTTGCGCCGGGGAGCATGACCGAGCCAAGAG
GGATCTCTCGTCTTAAAACCAGGCTCACCAGCGCCAAGGACTCCCGGAAA
CATCGTGGTGGTCCGTGCAAGGCATGTTCTTTCAGTGGGGGCTCCCCTTT
TGGACAAGGTCGCGCCTGCTTGCAGTGTGGCCGGAACTGCACGCGTGCAG
CAACTGCAGCTCCGGCTAGCCAGGAACGCTCCAGGCGGCGGAAGACCTTC
CAAGTCGCCCCTACCATTACGCAGGGGATCCAACAGCCTCGGTCCTCCAT
GGCCAAGCATGTATCGCCCACCGGCGGCCCTTTGGGATCACCCGCAGCTG
CGGAGGCCGACGGCGTGGCCGCTCCAGCTGGTGTCACGCCGCTGGAAGCT
GCAGTGGGACAGGCCATCTGGCCTGTGAAATCAGATTCGGACCTGGGTGA
GATGGATGCGTCGCATCCATGGATCCTGGGCGTTGACAGCGGGTCTGCCA
GCGAGGAATGGGCCAGCATGGAGCGTCGCCGGCAGCTGTGGCTGGACAGC
GGGTCGCTGTCACAGCAAAGTATCCACTGGGGGGCGGGCAAGGAGTCCAA
CAGGGAGGGCTTTGGAAAAGACGATTTTGACACCCACCTTGGTGGCGACA
CGGCTCACCAGCGCCAAGGACTCCCGGAAACATCGTGGTGGTCCGTGCAA
GGCATGTTCTTTCAGTGGGGGCTCCCCTTTTGGACAAGGTCGCGCCTGCT
TGCAGTGTGGCCGGAACTGCACGCGTGCAGCAACTGCAGCTCCGGCTAGC
CAGGAACGCTCCAGGCGGCGGAAGACCTTCCAAGTCGCCCCTACCATTAC
GCAGGGGATCCAACAGCCTCGGTCCTCCATGGCCAAGCATGTATCGCCCA
CCGGCGGCCCTTTGGGATCACCCGCAGCTGCGGAGGCCGACGGCGTGGCC
GCTCCAGCTGGTGTCACGCCGCTGGAAGCTGCAGTGGGACAGGCCATCTG
GCCTGTGAAATCAGATTCGGACCTGGGTGAGATGGATGCGTCGCATCCAT
GGATCCTGGGCGTTGACAGCGGGTCTGCCAGCGAGGAATGGGCCAGCATG
GAGCGTCGCCGGCAGCTGTGGCTGGACAGCGGGTCGCTGTCACAGCAAAG
TATCCACTGGGGGGCGGGCAAGGAGTCCAACAGGGAGGGCTTTGGAAAAG
ACGATTTTGACACCCACCTTGGTGGCGACACGGGAGTGCCGCCAGGAGAA
CAGCATTCGCCCACTGCCCTGCTCGCCACCATTGCAGAGGTATCCCGCAG
CGCCCTCGCACGTACCCACGCCGCAAGGAGGGAAGAGCCACCGGGTCAGG
GCGCACGGTGGCCCCCCGCCACCGTAGGCCACGGGGGGGGGGGGCTGGCT
GTGCAGGCAGACGGGAGGGTTGTCCTGCCCTGGTACCGCCGCCCGGTCAA
CCCGCCGCCGGCCCTAAGCCTTGAATCCCTGTCGCTTGCGGCGGCGCCGC
TGTGGGAGACCTCGGCGCCCAGTCGGGGCGGACAGGCAGGGAGTTCTGCC
TTGGAGAAGGGAGTGCCGCCAGGAGAACAGCATTCGCCCACTGCCCTGCT
CGCCACCATTGCAGAGGTATCCCGCAGCGCCCTCGCACGTACCCACGCCG
CAAGGAGGGAAGAGCCACCGGGTCAGGGCGCACGGTGGCCCCCCGCCACC
GTAGGCCACGGGGGGGGGGGGCTGGCTGTGCAGGCAGACGGGAGGGTTGT
CCTGCCCTGGTACCGCCGCCCGGTCAACCCGCCGCCGGCCCTAAGCCTTG
AATCCCTGTCGCTTGCGGCGGCGCCGCTGTGGGAGACCTCGGCGCCCAGT
CGGGGCGGACAGGCAGGGAGTTCTGCCTTGGAGAAG
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