mRNA_S-ischiensis_contig1.1000.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1000.1
Unique NamemRNA_S-ischiensis_contig1.1000.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6932093..6933508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1233
Cds size1005
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1000.1prot_S-ischiensis_contig1.1000.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 6932093..6933282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.0432475-CDS-S-ischiensis_contig1:6932092..69328991622815358.0432475-CDS-S-ischiensis_contig1:6932092..6932899Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6932093..6932899 -
1695739658.6352668-CDS-S-ischiensis_contig1:6932092..69328991695739658.6352668-CDS-S-ischiensis_contig1:6932092..6932899Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6932093..6932899 -
1622815358.057325-CDS-S-ischiensis_contig1:6933084..69332821622815358.057325-CDS-S-ischiensis_contig1:6933084..6933282Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6933085..6933282 -
1695739658.6454942-CDS-S-ischiensis_contig1:6933084..69332821695739658.6454942-CDS-S-ischiensis_contig1:6933084..6933282Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6933085..6933282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815358.0722663-UTR-S-ischiensis_contig1:6933282..69335081622815358.0722663-UTR-S-ischiensis_contig1:6933282..6933508Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6933283..6933508 -
1695739658.658256-UTR-S-ischiensis_contig1:6933282..69335081695739658.658256-UTR-S-ischiensis_contig1:6933282..6933508Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 6933283..6933508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1000.1

>prot_S-ischiensis_contig1.1000.1 ID=prot_S-ischiensis_contig1.1000.1|Name=mRNA_S-ischiensis_contig1.1000.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=335bp
MDSQAPALSVDLSVADSSEGHQHGVGSEPSVLEWLILQRIPPDDARAYAD
NLVELGGFDDLRSLDEDVTGADLRDAGMKVGHVRRVMRALSARRGGGPGS
GPGLSTDRAEPPPVIHCNQCRVVCVDPLGREQVFVIKPGGDGRARVSSGR
RPGSSSSSSGGRGGTGGGISRAGSNRGGDSASVRRSMPCNADAGLVAAAG
GPGDGTQRATDAGTAILEERQRLPREVLAETDPRTWPVSTVIAWLEGFEA
LRSGHYARRFREDKVDGRSLLGITSEADAEALGVMLMPDKRRLLSEVSAL
RQRWREPHITADLQRPSQTPRGGGSAHSPSPPPPP
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mRNA from alignment at S-ischiensis_contig1:6932093..6933508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1000.1 ID=mRNA_S-ischiensis_contig1.1000.1|Name=mRNA_S-ischiensis_contig1.1000.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1416bp|location=Sequence derived from alignment at S-ischiensis_contig1:6932093..6933508- (Schizocladia ischiensis KU_0333)
GAGCGAGAGCGGCGTCGGAAGGGAAGGCGCCACAAGCAGAAAAGCCGGCC
CAAAGCCGGCAGTACAGGAGGTGGGGGCGCAGTGCCCCCCTGCCTCATGG
AGTGGGCGCCCCCCCCTCCCTTGAACCTCTTTCTTGTTATCGCTCCTCCC
CCCAGCGCGCGGGACCTTTTGAAAATCAAGGCGGGTAGGCGCCACTCCTG
GCCTGGGCGCGAGCGGGAACACCGGCATGGATAGTCAGGCGCCGGCTCTG
TCCGTAGACCTGTCGGTAGCGGACTCGTCCGAAGGCCATCAGCACGGCGT
GGGCTCCGAACCGTCTGTGTTGGAATGGCTCATTCTCCAGCGGATCCCCC
CTGATGACGCGCGGGCTTACGCGGACAATCTTGTCGAGCTTGGGGGGTTC
GACGACTTGCGGTCTTTGGACGAGGTGCGTGGTTCATATTCAAGAAGAAG
CTGGCGCGTTCGAGTGTTTCCTGCGTGTGGGGCGACTGTCGGTGTGGGAC
AGTACAGGGGCGTGGCCAGGTTCGCCTAGCCAGCTCACCGGCATTGACCT
TGTATGTCATGGTGTATCCTCCTCCCTTGTGTGTGTCCTTTTTTTTTTTT
TTTTACCAGGATGTAACGGGCGCAGACCTCCGAGATGCCGGCATGAAAGT
GGGCCACGTGCGGCGGGTCATGAGGGCGCTGTCTGCTCGCAGGGGGGGGG
GGCCCGGGTCCGGCCCTGGGTTGTCAACCGACCGGGCCGAGCCGCCCCCT
GTTATCCACTGCAACCAGTGCCGGGTAGTGTGTGTGGACCCACTGGGGCG
GGAGCAGGTTTTCGTCATCAAGCCAGGTGGAGATGGGAGGGCACGTGTCT
CCAGTGGACGCAGGCCTGGAAGCAGCAGCAGCAGCAGCGGTGGCAGGGGT
GGCACGGGTGGCGGTATCAGCCGCGCCGGCAGCAACCGCGGCGGTGACAG
CGCCAGCGTTCGAAGGTCCATGCCCTGCAATGCTGATGCAGGCCTGGTGG
CCGCCGCCGGCGGCCCCGGCGACGGCACGCAGCGCGCCACGGATGCAGGC
ACCGCTATCCTGGAAGAACGGCAGCGCCTCCCGCGGGAGGTGCTAGCCGA
GACCGACCCCCGCACGTGGCCCGTGTCGACTGTGATTGCATGGCTGGAGG
GCTTTGAGGCCCTCCGCAGCGGGCACTACGCGAGGCGCTTCCGGGAGGAC
AAGGTGGACGGCCGGTCGCTGCTGGGGATCACCAGCGAGGCGGACGCTGA
AGCGCTCGGGGTGATGCTCATGCCCGACAAGCGCCGACTCCTCAGCGAGG
TGTCCGCCCTGCGGCAGAGGTGGCGGGAGCCGCACATCACCGCCGACCTG
CAGAGGCCTTCCCAGACGCCCAGGGGCGGCGGTTCGGCTCACTCGCCCTC
ACCCCCGCCGCCGCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:6932093..6933508-

>mRNA_S-ischiensis_contig1.1000.1 ID=mRNA_S-ischiensis_contig1.1000.1|Name=mRNA_S-ischiensis_contig1.1000.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2010bp|location=Sequence derived from alignment at S-ischiensis_contig1:6932093..6933508- (Schizocladia ischiensis KU_0333)
ATGGATAGTCAGGCGCCGGCTCTGTCCGTAGACCTGTCGGTAGCGGACTC
GTCCGAAGGCCATCAGCACGGCGTGGGCTCCGAACCGTCTGTGTTGGAAT
GGCTCATTCTCCAGCGGATCCCCCCTGATGACGCGCGGGCTTACGCGGAC
AATCTTGTCGAGCTTGGGGGGTTCGACGACTTGCGGTCTTTGGACGAGAT
GGATAGTCAGGCGCCGGCTCTGTCCGTAGACCTGTCGGTAGCGGACTCGT
CCGAAGGCCATCAGCACGGCGTGGGCTCCGAACCGTCTGTGTTGGAATGG
CTCATTCTCCAGCGGATCCCCCCTGATGACGCGCGGGCTTACGCGGACAA
TCTTGTCGAGCTTGGGGGGTTCGACGACTTGCGGTCTTTGGACGAGGATG
TAACGGGCGCAGACCTCCGAGATGCCGGCATGAAAGTGGGCCACGTGCGG
CGGGTCATGAGGGCGCTGTCTGCTCGCAGGGGGGGGGGGCCCGGGTCCGG
CCCTGGGTTGTCAACCGACCGGGCCGAGCCGCCCCCTGTTATCCACTGCA
ACCAGTGCCGGGTAGTGTGTGTGGACCCACTGGGGCGGGAGCAGGTTTTC
GTCATCAAGCCAGGTGGAGATGGGAGGGCACGTGTCTCCAGTGGACGCAG
GCCTGGAAGCAGCAGCAGCAGCAGCGGTGGCAGGGGTGGCACGGGTGGCG
GTATCAGCCGCGCCGGCAGCAACCGCGGCGGTGACAGCGCCAGCGTTCGA
AGGTCCATGCCCTGCAATGCTGATGCAGGCCTGGTGGCCGCCGCCGGCGG
CCCCGGCGACGGCACGCAGCGCGCCACGGATGCAGGCACCGCTATCCTGG
AAGAACGGCAGCGCCTCCCGCGGGAGGTGCTAGCCGAGACCGACCCCCGC
ACGTGGCCCGTGTCGACTGTGATTGCATGGCTGGAGGGCTTTGAGGCCCT
CCGCAGCGGGCACTACGCGAGGCGCTTCCGGGAGGACAAGGTGGACGGCC
GGTCGCTGCTGGGGATCACCAGCGAGGCGGACGCTGAAGCGCTCGGGGTG
ATGCTCATGCCCGACAAGCGCCGACTCCTCAGCGAGGTGTCCGCCCTGCG
GCAGAGGTGGCGGGAGCCGCACATCACCGCCGACCTGCAGAGGCCTTCCC
AGACGCCCAGGGGCGGCGGTTCGGCTCACTCGCCCTCACCCCCGCCGCCG
CCGGATGTAACGGGCGCAGACCTCCGAGATGCCGGCATGAAAGTGGGCCA
CGTGCGGCGGGTCATGAGGGCGCTGTCTGCTCGCAGGGGGGGGGGGCCCG
GGTCCGGCCCTGGGTTGTCAACCGACCGGGCCGAGCCGCCCCCTGTTATC
CACTGCAACCAGTGCCGGGTAGTGTGTGTGGACCCACTGGGGCGGGAGCA
GGTTTTCGTCATCAAGCCAGGTGGAGATGGGAGGGCACGTGTCTCCAGTG
GACGCAGGCCTGGAAGCAGCAGCAGCAGCAGCGGTGGCAGGGGTGGCACG
GGTGGCGGTATCAGCCGCGCCGGCAGCAACCGCGGCGGTGACAGCGCCAG
CGTTCGAAGGTCCATGCCCTGCAATGCTGATGCAGGCCTGGTGGCCGCCG
CCGGCGGCCCCGGCGACGGCACGCAGCGCGCCACGGATGCAGGCACCGCT
ATCCTGGAAGAACGGCAGCGCCTCCCGCGGGAGGTGCTAGCCGAGACCGA
CCCCCGCACGTGGCCCGTGTCGACTGTGATTGCATGGCTGGAGGGCTTTG
AGGCCCTCCGCAGCGGGCACTACGCGAGGCGCTTCCGGGAGGACAAGGTG
GACGGCCGGTCGCTGCTGGGGATCACCAGCGAGGCGGACGCTGAAGCGCT
CGGGGTGATGCTCATGCCCGACAAGCGCCGACTCCTCAGCGAGGTGTCCG
CCCTGCGGCAGAGGTGGCGGGAGCCGCACATCACCGCCGACCTGCAGAGG
CCTTCCCAGACGCCCAGGGGCGGCGGTTCGGCTCACTCGCCCTCACCCCC
GCCGCCGCCG
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