mRNA_S-dermatodea_contig1073.499.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1073.499.1
Unique NamemRNA_S-dermatodea_contig1073.499.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Match: D7FNY9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNY9_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 4.980e-34
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 1
Query:    1 AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEKKTKVTIKRRTYFDDQDSDDNDDDLM 213
            A+VKP+KARRVE+MLIHAATSG L GKVTEDQFIQML QVSSQMEKKTKVTIKR+TYFD+QDSDDNDDD+M
Sbjct:   62 AMVKPDKARRVEEMLIHAATSGKLGGKVTEDQFIQMLEQVSSQMEKKTKVTIKRKTYFDEQDSDDNDDDMM 132          
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Match: W7U6K2_9STRA (Programmed cell death protein 5 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6K2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.920e-18
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEKK-TKVTIKRRTYFDDQDSDDNDDDLM 213
            AIV+ EK R V+DMLI AATSG L GKV+E+Q I+ML QVSSQ++KK TKVTI+RR   D+ D DDNDDD++
Sbjct:   67 AIVRKEKVRGVQDMLIQAATSGRLRGKVSEEQLIEMLEQVSSQVDKKATKVTIQRRRCLDE-DEDDNDDDML 137          
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Match: A0A484E5F5_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5F5_BRELC)

HSP 1 Score: 74.3 bits (181), Expect = 1.620e-15
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEK-KTKVTIKRRTYFDDQDSDDNDDDL 210
            A+VKPEKAR +EDM+I  A  G LA K+ E++ I +L QV    EK +TKVTIKRRTYF D+D  D+DD+ 
Sbjct:   48 AMVKPEKARAIEDMVIQMAQRGQLAAKIDEEKLIDLLNQVGVNEEKQRTKVTIKRRTYFSDEDDGDDDDEF 118          
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Match: A0A835Z9S3_9STRA (Double-stranded DNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S3_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.120e-14
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEKKTKVTIKRRTYFDDQD 186
            A+VK +KAR +EDMLI AA  G L GKV+++QF+QML  VS+QME+KTKVT++RR    D D
Sbjct:   56 AMVKKDKARALEDMLISAAKQGKLGGKVSQEQFVQMLEGVSAQMERKTKVTMRRRRNIGDSD 117          
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Match: W2LQR5_PHYPR (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2LQR5_PHYPR)

HSP 1 Score: 67.8 bits (164), Expect = 3.410e-13
Identity = 36/59 (61.02%), Postives = 43/59 (72.88%), Query Frame = 1
Query:    1 AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEK-KTKVTIKRRTYF 174
            AIVKPEKAR +EDM+I  A  G LA K+ ED+ I +L QV    EK +TKVT+KRRTYF
Sbjct:   25 AIVKPEKARAIEDMVIQMAQRGQLAAKIDEDKLIDLLNQVGVTEEKQRTKVTMKRRTYF 83          
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Match: A0A1Y1IT43_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IT43_KLENI)

HSP 1 Score: 68.6 bits (166), Expect = 3.890e-13
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEKKTKVTIKRRTYFDDQD 186
            A+VKP+KAR VED++I  A  G +  KVTED+ I +L Q++ Q + +TKVTI+RR+ FDD D
Sbjct:   68 ALVKPDKARGVEDLVIRMAQMGQITEKVTEDRLISLLEQINEQQQTRTKVTIQRRSVFDDDD 129          
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Match: A0A7M5V5D9_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V5D9_9CNID)

HSP 1 Score: 67.4 bits (163), Expect = 1.130e-12
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    1 AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEKKTKVTIKRRTYFDDQDSDDN 198
            A+VKPEKA  +E+MLI  A SG L GK+TE+  + +L +V+ QM  K KVTI RR Y  D DSDD+
Sbjct:   65 ALVKPEKAAMIENMLIQMARSGQLGGKMTEEGLVGVLEKVNQQMANKNKVTITRRRYAMDSDSDDD 130          
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Match: A0A3M6VTS8_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTS8_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.830e-12
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEK-KTKVTIKRRTYFDD 180
            AIVKPEKAR +E+M+I  A  G LA KV E++ I +L QV    EK + KVTIKRRTYF D
Sbjct:   40 AIVKPEKARAIEEMVIQMAQRGQLAAKVDEEKLIDLLNQVGVTEEKQRVKVTIKRRTYFSD 100          
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Match: A0A225UJY1_9STRA (Uncharacterized protein n=27 Tax=Phytophthora TaxID=4783 RepID=A0A225UJY1_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.010e-12
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEK-KTKVTIKRRTYF 174
            AIVKPEKAR +EDM+I  A  G L  K+ ED+ I +L QV    EK +TKVT+KRRTYF
Sbjct:   40 AIVKPEKARAIEDMVIQMAQRGQLTTKIDEDKLIDLLNQVGVTEEKQRTKVTMKRRTYF 98          
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Match: K3WXD1_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WXD1_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 4.210e-12
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEK-KTKVTIKRRTYF 174
            AIVKPEKAR +EDM+I  A  G LA K+ ED+ I +L +     EK +TKVT+KRRTYF
Sbjct:   43 AIVKPEKARAIEDMVIQMAQRGQLAAKIDEDKLIDLLNRAGETEEKQRTKVTMKRRTYF 101          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1073.499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY9_ECTSI4.980e-3487.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7U6K2_9STRA4.920e-1865.28Programmed cell death protein 5 n=2 Tax=Monodopsid... [more]
A0A484E5F5_BRELC1.620e-1556.34Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A835Z9S3_9STRA1.120e-1459.68Double-stranded DNA-binding domain-containing prot... [more]
W2LQR5_PHYPR3.410e-1361.02Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
A0A1Y1IT43_KLENI3.890e-1353.23Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A7M5V5D9_9CNID1.130e-1254.55Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A3M6VTS8_9STRA2.830e-1259.02Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A225UJY1_9STRA4.010e-1259.32Uncharacterized protein n=27 Tax=Phytophthora TaxI... [more]
K3WXD1_GLOUD4.210e-1257.63Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1073contigS-dermatodea_contig1073:22051..22633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue6.3e-26
Seed eggNOG ortholog2880.D7FNY9
Preferred namePDCD5
KEGG rclassRC00726
KEGG koko:K00077,ko:K03354,ko:K03860,ko:K05389,ko:K06875
KEGG TC1.A.1.7
KEGG ReactionR02472,R05916
KEGG Pathwayko00563,ko00770,ko01100,ko01110,ko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map00563,map00770,map01100,map01110,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00119,M00389
GOsGO:0000302,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005539,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006915,GO:0006950,GO:0006979,GO:0008047,GO:0008092,GO:0008150,GO:0008201,GO:0008219,GO:0008285,GO:0009636,GO:0009719,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010035,GO:0010421,GO:0010468,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010698,GO:0010821,GO:0010822,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015631,GO:0019222,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0031323,GO:0031325,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0033043,GO:0033157,GO:0033554,GO:0034599,GO:0034614,GO:0035690,GO:0036473,GO:0036474,GO:0042127,GO:0042221,GO:0042493,GO:0042542,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043280,GO:0043281,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0045862,GO:0046677,GO:0048487,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060341,GO:0065007,GO:0065009,GO:0070201,GO:0070301,GO:0070848,GO:0070887,GO:0071236,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0080090,GO:0090087,GO:0090199,GO:0090200,GO:0090316,GO:0097159,GO:0097237,GO:0097367,GO:0097468,GO:0098772,GO:1901363,GO:1901681,GO:1901700,GO:1901701,GO:1903214,GO:1903332,GO:1903333,GO:1903533,GO:1903636,GO:1903638,GO:1903644,GO:1903645,GO:1903747,GO:1903749,GO:1903827,GO:1903829,GO:1903955,GO:1904589,GO:1904591,GO:1904951,GO:1905475,GO:1905477,GO:2000116,GO:2001056,GO:2001233,GO:2001235
EggNOG free text desc.regulation of protein import into mitochondrial outer membrane
EggNOG OGsCOG2118@1,KOG3431@2759
EC1.1.1.169
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04040,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPDCD5-related protein
Ec32 orthologEc-10_004870.1
Exons2
Model size216
Cds size216
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924170.943827-CDS-S-dermatodea_contig1073:22050..221491622924170.943827-CDS-S-dermatodea_contig1073:22050..22149Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1073 22051..22149 -
1694079066.2677696-CDS-S-dermatodea_contig1073:22050..221491694079066.2677696-CDS-S-dermatodea_contig1073:22050..22149Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1073 22051..22149 -
1622924170.957101-CDS-S-dermatodea_contig1073:22516..226331622924170.957101-CDS-S-dermatodea_contig1073:22516..22633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1073 22517..22633 -
1694079066.2790036-CDS-S-dermatodea_contig1073:22516..226331694079066.2790036-CDS-S-dermatodea_contig1073:22516..22633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1073 22517..22633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1073.499.1prot_S-dermatodea_contig1073.499.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1073 22051..22633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1073.499.1

>prot_S-dermatodea_contig1073.499.1 ID=prot_S-dermatodea_contig1073.499.1|Name=mRNA_S-dermatodea_contig1073.499.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
AIVKPEKARRVEDMLIHAATSGALAGKVTEDQFIQMLGQVSSQMEKKTKV
TIKRRTYFDDQDSDDNDDDLM*
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mRNA from alignment at S-dermatodea_contig1073:22051..22633-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1073.499.1 ID=mRNA_S-dermatodea_contig1073.499.1|Name=mRNA_S-dermatodea_contig1073.499.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=583bp|location=Sequence derived from alignment at S-dermatodea_contig1073:22051..22633- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGATAGTGAAGCCAGAGAAGGCCCGTCGTGTGGAAGACATGCTCATCCA CGCCGCGACGTCAGGGGCACTGGCCGGCAAGGTCACGGAGGACCAGTTCA TCCAGATGCTCGGGCAGGTACGTAAAATATTTTGTAGATCACCTGTTGCA TTGATGCGTCATGTACGTTGTCGGTGCAAGACTCCTTCTGGAGTGAAACC GCGTTCCACGTAGAGAAGGACGCGGACAGTCGAATTATCCACCTTGCGCT TCCACGTTCAAGTGCCGAGCTGATCGTACATCGTGAGAACGATGCGGTTG CGTGCTGGCTCCTATCGTGTTGGTGAACAGCCTCTGCAAGTTTTTTGGTC GGCGTACAACGGCTATTGTATGGCAGGATAAGCCTCGGGGTGAAACGCTG GATATACCTGCAGGCAGGCTTCGTTTGAACGTATAATTCGAGCTTGTCTA CCCTTTCGTGGTGATATTTATCTCTTGCCTGCAGGTGAGCTCGCAAATGG AGAAGAAGACGAAGGTCACCATCAAGCGGAGGACGTACTTCGACGACCAA GACTCCGACGACAACGACGACGACCTTATGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1073:22051..22633-

>mRNA_S-dermatodea_contig1073.499.1 ID=mRNA_S-dermatodea_contig1073.499.1|Name=mRNA_S-dermatodea_contig1073.499.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig1073:22051..22633- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGATAGTGAAGCCAGAGAAGGCCCGTCGTGTGGAAGACATGCTCATCCA
CGCCGCGACGTCAGGGGCACTGGCCGGCAAGGTCACGGAGGACCAGTTCA
TCCAGATGCTCGGGCAGGCGATAGTGAAGCCAGAGAAGGCCCGTCGTGTG
GAAGACATGCTCATCCACGCCGCGACGTCAGGGGCACTGGCCGGCAAGGT
CACGGAGGACCAGTTCATCCAGATGCTCGGGCAGGTGAGCTCGCAAATGG
AGAAGAAGACGAAGGTCACCATCAAGCGGAGGACGTACTTCGACGACCAA
GACTCCGACGACAACGACGACGACCTTATGTAGGTGAGCTCGCAAATGGA
GAAGAAGACGAAGGTCACCATCAAGCGGAGGACGTACTTCGACGACCAAG
ACTCCGACGACAACGACGACGACCTTATGTAG
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