mRNA_S-dermatodea_contig10659.460.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10659.460.1
Unique NamemRNA_S-dermatodea_contig10659.460.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10659.460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10659contigS-dermatodea_contig10659:3931..5520 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size425
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10659.460.1prot_S-dermatodea_contig10659.460.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10659 3931..5494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924168.0288274-CDS-S-dermatodea_contig10659:3930..41821622924168.0288274-CDS-S-dermatodea_contig10659:3930..4182Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 3931..4182 -
1694079064.2376347-CDS-S-dermatodea_contig10659:3930..41821694079064.2376347-CDS-S-dermatodea_contig10659:3930..4182Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 3931..4182 -
1622924168.044144-CDS-S-dermatodea_contig10659:4803..48751622924168.044144-CDS-S-dermatodea_contig10659:4803..4875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 4804..4875 -
1694079064.246265-CDS-S-dermatodea_contig10659:4803..48751694079064.246265-CDS-S-dermatodea_contig10659:4803..4875Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 4804..4875 -
1622924168.0537143-CDS-S-dermatodea_contig10659:5419..54941622924168.0537143-CDS-S-dermatodea_contig10659:5419..5494Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 5420..5494 -
1694079064.2553208-CDS-S-dermatodea_contig10659:5419..54941694079064.2553208-CDS-S-dermatodea_contig10659:5419..5494Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10659 5420..5494 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924168.0668638-UTR-S-dermatodea_contig10659:5494..55201622924168.0668638-UTR-S-dermatodea_contig10659:5494..5520Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10659 5495..5520 -
1694079064.2726195-UTR-S-dermatodea_contig10659:5494..55201694079064.2726195-UTR-S-dermatodea_contig10659:5494..5520Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10659 5495..5520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10659.460.1

>prot_S-dermatodea_contig10659.460.1 ID=prot_S-dermatodea_contig10659.460.1|Name=mRNA_S-dermatodea_contig10659.460.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=133bp
MSDRTGDADLDPMEVMEATKGVYLEERLASLYKYPSSADSGEGTDGGSDM
SPTGSIASDDAEFGDRVDDDWTPSPQTPASYMKQHPGLARGIVSLRESNG
GGSAGVSSWNAMDEDEPGGAARNLCPIRTSLPP
back to top

mRNA from alignment at S-dermatodea_contig10659:3931..5520-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10659.460.1 ID=mRNA_S-dermatodea_contig10659.460.1|Name=mRNA_S-dermatodea_contig10659.460.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1590bp|location=Sequence derived from alignment at S-dermatodea_contig10659:3931..5520- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGTGACCACTCGGTGTGACCAGCCTATGTCAGATCGAACAGGGGATGCA
GACTTGGATCCGATGGAGGTCATGGAGGCCACAAAGGGTGTCTATCTCGA
GGTGAGGCTAATGCAAGGAAGGGGGAATGAATGGGCTTGCAGTAGGCGGA
TTGCGCGGAAGGAGCAGGGAGGGTTGGGGGGGGGGGGAGTCGTGGGAGAC
AGAACGCCTAGATTGTGGCCGTTGAGGCGGTCGTGCGGCGCATAGCTTTA
GATACCTAGTGTCCCAAGGCCTTTGATGATTTGAAAGCCTCGGGGTTAGG
GCTTGGCGACGCGCTCAATCGGCCATGGGGCTGGTCTTGCCTTCTTGGGC
GATACGGGACTGCTATTTCCGTAGCCTCGGCGGCGGTCATTGTGACGAGG
GCAACCTTGTGCGCTGATACGGACGACAAGCGCGAGTAGCTCCTATGAAA
AGTGTTGTCGTGACCGGCTCTTGCCAAATGTTTTTTGTGTAACGTGCCGT
CGTGTCCTTTTCCTTTAATCGGCATCACTCGGTCTTGGCCGGTGTTGAGA
CTGACCTAGCTCACGCACACTCGCAGCCAAACCCGTCGCGTTTGGTGTAA
CTCACTCATGCGGTCTTCGCACTCGCTGATGGTATGCGTACGCAGGAACG
CCTGGCTTCCCTGTACAAGTACCCGTCTTCCGCTGACTCCGGCGAGGGCA
CCGACGGCGGCTCGGACGTGAGCGCTGAACTATTGTAGAAATTTTTGTCG
TGCCGTGATGTGTCGTGGTGTGGGTGAAGGTGCACGCCACTCCTCGTGCT
ACAATGGGCTGTAGGGCCTTCACTTATCGAAATTCTCCATGTTGCTCTGC
CGTTTCGCGAGTCGCTCTCAGGTTATTGTCGATGGCATGTATTTCCATTT
TTTATTGATTGATTTGCACACGTATAGCCGATCGGCTTAATCCGACCCGG
CTTGTGGTCAGACACGCAAAAAGTCAAGNNNNNNNNNNAAAGTCAAGGAG
AAAAATAACTAATCAGAACTCTACTTCTACTTATAACCGTACCGTCACTG
GTACTTACTATTGTGCACCGATAGTGACGACACGCGAGCTGTTGTGTTGC
ACCGTTCGCAAGCTCTTCCCGTGGTGGCGGACAGCGTGGCGTTATAATTG
GCTAGGCTTGCTGTACCTGTAGCAGAACTCGCAGCTCGTGGCGCCACGGT
CCGTGCCTTCAATACGCGGTATGCAAAGACGCGAAGGGAAGATTGCTGTA
TGCTCGTATTTGATGAGACGCGTGAATTAGTCATGTAGCCAACCCCTAAC
CGCCACCGTCGACGTTGTCACCACCCACATTATGCCAGATGTCCCCCACG
GGGAGCATTGCCAGCGATGACGCGGAGTTCGGCGACCGCGTCGACGATGA
CTGGACGCCTTCACCCCAAACCCCCGCCTCGTATATGAAGCAACACCCTG
GTCTTGCACGGGGAATCGTAAGCCTGCGAGAGAGCAACGGCGGTGGTTCG
GCGGGCGTTTCTTCCTGGAACGCGATGGACGAGGACGAGCCGGGCGGTGC
GGCGCGCAATCTTTGCCCAATAAGGACATCGTTGCCACCG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10659:3931..5520-

>mRNA_S-dermatodea_contig10659.460.1 ID=mRNA_S-dermatodea_contig10659.460.1|Name=mRNA_S-dermatodea_contig10659.460.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at S-dermatodea_contig10659:3931..5520- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCAGATCGAACAGGGGATGCAGACTTGGATCCGATGGAGGTCATGGA
GGCCACAAAGGGTGTCTATCTCGAGATGTCAGATCGAACAGGGGATGCAG
ACTTGGATCCGATGGAGGTCATGGAGGCCACAAAGGGTGTCTATCTCGAG
GAACGCCTGGCTTCCCTGTACAAGTACCCGTCTTCCGCTGACTCCGGCGA
GGGCACCGACGGCGGCTCGGACGAACGCCTGGCTTCCCTGTACAAGTACC
CGTCTTCCGCTGACTCCGGCGAGGGCACCGACGGCGGCTCGGACATGTCC
CCCACGGGGAGCATTGCCAGCGATGACGCGGAGTTCGGCGACCGCGTCGA
CGATGACTGGACGCCTTCACCCCAAACCCCCGCCTCGTATATGAAGCAAC
ACCCTGGTCTTGCACGGGGAATCGTAAGCCTGCGAGAGAGCAACGGCGGT
GGTTCGGCGGGCGTTTCTTCCTGGAACGCGATGGACGAGGACGAGCCGGG
CGGTGCGGCGCGCAATCTTTGCCCAATAAGGACATCGTTGCCACCGATGT
CCCCCACGGGGAGCATTGCCAGCGATGACGCGGAGTTCGGCGACCGCGTC
GACGATGACTGGACGCCTTCACCCCAAACCCCCGCCTCGTATATGAAGCA
ACACCCTGGTCTTGCACGGGGAATCGTAAGCCTGCGAGAGAGCAACGGCG
GTGGTTCGGCGGGCGTTTCTTCCTGGAACGCGATGGACGAGGACGAGCCG
GGCGGTGCGGCGCGCAATCTTTGCCCAATAAGGACATCGTTGCCACCG
back to top