mRNA_S-dermatodea_contig10642.450.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10642.450.1
Unique NamemRNA_S-dermatodea_contig10642.450.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10642.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10642contigS-dermatodea_contig10642:1188..6722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size382
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10642.450.1prot_S-dermatodea_contig10642.450.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10642 1315..6674 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.444992-UTR-S-dermatodea_contig10642:1187..13141622924167.444992-UTR-S-dermatodea_contig10642:1187..1314Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10642 1188..1314 -
1694079063.823258-UTR-S-dermatodea_contig10642:1187..13141694079063.823258-UTR-S-dermatodea_contig10642:1187..1314Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10642 1188..1314 -
1622924167.4801092-UTR-S-dermatodea_contig10642:6674..67221622924167.4801092-UTR-S-dermatodea_contig10642:6674..6722Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10642 6675..6722 -
1694079063.8499994-UTR-S-dermatodea_contig10642:6674..67221694079063.8499994-UTR-S-dermatodea_contig10642:6674..6722Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10642 6675..6722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.4589863-CDS-S-dermatodea_contig10642:1314..14631622924167.4589863-CDS-S-dermatodea_contig10642:1314..1463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10642 1315..1463 -
1694079063.8329778-CDS-S-dermatodea_contig10642:1314..14631694079063.8329778-CDS-S-dermatodea_contig10642:1314..1463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10642 1315..1463 -
1622924167.4701133-CDS-S-dermatodea_contig10642:6616..66741622924167.4701133-CDS-S-dermatodea_contig10642:6616..6674Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10642 6617..6674 -
1694079063.8412929-CDS-S-dermatodea_contig10642:6616..66741694079063.8412929-CDS-S-dermatodea_contig10642:6616..6674Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10642 6617..6674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10642.450.1

>prot_S-dermatodea_contig10642.450.1 ID=prot_S-dermatodea_contig10642.450.1|Name=mRNA_S-dermatodea_contig10642.450.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
MHQDTGHGQGRLKHDRSKPAGSRPHQTPLHPRRSPPSLSSTALSRSELLP
SQIPHNLAAAAADHLPLY*
back to top

mRNA from alignment at S-dermatodea_contig10642:1188..6722-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10642.450.1 ID=mRNA_S-dermatodea_contig10642.450.1|Name=mRNA_S-dermatodea_contig10642.450.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5535bp|location=Sequence derived from alignment at S-dermatodea_contig10642:1188..6722- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCACTAAAAAAGAACTCGAGAAAGAGAAGATGTCCGTTGCCAGCACAT
GCACCAGGACACGGGGCATGGACAAGGACGCCTGAAACACGACAGAAGCA
AACCAGGTACAGTACATCAAACACGAGTAAGAGGATCTCGTCATCTTATC
ACGTTACATTTTGGTACTACTATATTATAGTAACCACCACATTTTTATAT
ATTTTTTTTGGCACACATATGACAGACTTTCAGCTCCGAGGTCAGCTCTC
CGAGGTAGGTCCATCTGTGGTCACAAGGGATCATCCCATCTCTCTTATAT
TATCCCCGGTGTGCTCTCACCTTTGATTTTTATCGCGAATGCATTGGGTT
CGGCACTCCCGCAGCTCGCCGATTTCTCGGATTTTGCTTACTCACGCTCT
CGCGCTTTCCGCGGCGGAGGTAAAACAAATAAATATCGACTCTGCCGGGA
TTCGAACACCGGTCCTCCGCCTACTAGGCTGCTGGTCACCAGTTTAATTT
AACCACGGGGAACTATTATAGTATATTAGTAGCATTATTAGGGCTTTCCG
GTATGACCAAAACCTCTCCCGATATTGTACCAGTCTACAGCAACAGCCCC
GCTTCCCTCGGGCTATGATAGCTCCGTCCTCATTCCTGCGCCATAAGCCA
CGGGGTTCCCCAGGACTCCGCTTCAAGCACGCCTCATTACGCCCTAACCG
GCGCTCCAAACAGCGGGCTAGTATTATACCAAAAGGGTGAATAGTTTTGT
GTACTTTTTCTGTGTTCGTTCCTTCTTCTAGATCTATCCCAACCTGCTCT
CACTCTCTACGAATCCCTACCGCGTTGGAGCTGGCCGTAGTACACTATTA
GTAGTACAATAAGGACCTGGTGCAGAGGCGAGGGGGCACTGTCCGATCCC
GATTCTGATTCCTCTTCTATTACAGTATATGAGCGTTTTCTTTATCTGGG
GGTTACTATTAATAATAATATTTCTCCTCTCTTTGGCCTCTCTCGTGCTC
TATATAGTAAGTACCCCAGGCAGGGACGGACGGTATCGTGTATTGTACAA
GTAGAATTATGATTATAAAAGTTGTTTTCTCCTTGACTCTGTGCACATCT
GAACACAAGTCGGGTCGAATTGAGCCGATCGGTGACGTACACGTGTGCAA
ATCAGTACATGAATCAGAACAAGTAGTAGTGATCGAACCAGATCCAAAAC
GCTGCGTGGCTTGGGACGACCCGACCGCATTGTCTAGCTCATCACGACGA
TACCCGCCGATTGCGCTGGATCGGTGCCGTTAAACAGAAGTCGCAACTCG
GAAAAACTTTTTCAACGGCTCGTTGTCCCCTGCCGAGTATGTAGCATTGC
ACGGGCAAGGCAGGTATCAGAGATTGGGGGGCTAGCCCTACTGTAAGGTT
CATGGATGGAGCCAGCTTGTCGCAGCGCTCGGCGAACCTCTACAGCAGGT
CGCTCCCAAACGCCCGACAAAACGGGACGGAAAATAAACACTTGATGCAT
CGAAAGCAGGATAAAAAAAAAGCAATGAGTAAATATCCCACATCCACATG
CCACGGGCGGTTTCCTAACCCCGAAAAAACAAGGCACAAAAAACAAAAAC
ACCCAACGATCCCCATTTTGCGTGTTGATAAACCACACGAGAAAAACAAC
ACTAAAACGAAGAAAAAAAAAAACCACACACACCCACCCACCCACCTGTC
AAGGAGAGACGTCTCCCCCCACCCCTCCCCCCGCCTTTCTTCCGCCTCCT
CGTCAGAACTCCCTTCCTCCTCCTCGTCGCTACCAGACTCCTCCTCCCCG
CTAGAGCTGTCATCCTCACCGCTGGAAAAAACTCCGTCACCTCTCGACGC
GCCACCCAACCCCACCGCACCCCCATCGCCACCCTCACCCTTAGCCCTTC
GCGCTCTCGTGGGAGAAAACGCCCCAATCGCATCGGAAACCGTGTGCGTA
CCTACACCGATACCAATACCGACAGGTGGTCTCCGCCTTCGCCGCCCCTC
CACGAACCCGCTTCCAAGAGGCCTCCTTAAATGGAACCCCCCCGGTGAAT
TGATGTCCCCGCTCTGTCTCTTCTCCGGCGGCGGCGGCGGCGGAAGCGGT
GATATCGGCGCTTGCTCGGCAAGAGAGCTACTACCCGCTGATGTTGCGTC
GCGCGCAACTTCCCCAGACGTCGCCGCCGCGAGCGCGGTCTCGACCAGCT
TGGCTGGAAAATCGGCGCCGTCCGCGTCCCGCAAAATCCCCGCCGCCAGG
CCGTCGGCTGCGGCCGGATCTTCGTCCCCCGAAACGCCCTTCTCTGCGAG
CGCGACGTTTGGGGGTGGAAAGGCTGGAGAGCATCCTCCTGTCGCTGCCA
CCGCAGCCTCCGGAGCGGCTGCCGGAGCCGCTGCCGCTGCCGCTGGGGTA
GAGGTGGCGGTAGAGGTAGAGGTAGAGGTAGCGATAGCGGCAGGGACAGA
GGCTGCGCTGGGATCGTCCGAGCGAAAGCCGCGCTCTAACGGCGACAGCG
CGGATTCCTTCCCCGTCCTCTCCCAGCCCTCAACGCTGCTAGCGCCTCCA
CCTCCGCCTCCACCGCCTCGATCCCGCTCATTCCACGCCCGCCCGGTGCT
CGAAGCCAGCGGGAAGGGGGAGCCGCAGCGCGGGGGGTTGTCGCCGACCG
ACCCGGGCCCTTCAACAACCGGAGACGCAACGCCGTCCGGCGTTTTCAGG
GATGGGACCCCTACTGGGCGAGCGTCGACGGTCGGCCGAAACCCCATCAC
CCCGGTGCTCCTGCGGCGGGACGACCCTTGGATCGCCGTGGCCGGGGGGG
ACAAGCGCGAGCGGTAACCCGGTTGGGCTAGCCCGGTCGGGTACGCGCCG
CGGCAACGGGGATTTGCCGCTGCTGGCCCCTGCCCGAAGGAGGAGCGACG
CAAACGGGAAGGTGGTGATGCTTTGCCGCCGCTCGGGATCGCCGAGTTCG
CTTGGCTGCTCTTCGTCGGTGTTACGGCCGGACATGCCAACGCTGCCGCC
GCTGTCGGGACACCACCGCCCGGTGTAGGCGCCCCCCTAAGGGCATCGTC
GGTGTTGTTGTCCGAACGGGATTCCGCGTCCTCGGGTGACCCCCGGCTCT
CCTCCGGCACCGTGGCGACGCGCGGGGCACCGGCGGCGGAGACGAAGGCG
AAGGCCGCCGCCGCCGCCTGGTTTCTACCATACAAGCCGGAGCACGACGA
TCGCCGAGAACTCGGCGACACCGCGTGGACGGCTCTCTCCCTCCGGTAAC
CCTCGCCGCCAAAACCGTTGGCCTCTTTCGACTCTTCCCCTCGCTGTCCG
CCCTCGCCCTCGCACGCCCTCGCCCGGTCGCCATCCCGCCGAGGCGACCG
CGGCATCTCCGCATCCCCGCATGCCCCCCCGGCCGCCACCGCCGCCGCCG
CCGCCGGAATCACAGACGGAGCCGTTGGCGACAGAGGAGCCTTGACTGTC
GCCACGGGGGCCGCCTCCATCGCACTCGATTCTACCACCACGGACCCCGC
TTTGGCCGGGAGCGCGGATGGGGGTGGGGCCGCCGCGCGGGCCGCGCGGT
TGCTTTTATCCCGTTCGTCCGCGCTTCCAACCGAAGCCGGGGTCAAAGGT
CCCGCGCTCTCTTCCGTCGCGGCAGGTGTCGGCGTCGGCAAGGCGGGAGG
TTGTTGGTTCGGCGTTCGGGAAGGTGCTCCCACCGCCACCACCGTTACCG
GTGCAGTTACTGCAGTTGCTGCTTCTGCTGCTGCTGCGATCGTCGTCGAC
AGCGCAACCGCCGTCTTGCGTAACGAGGACACCGTGCCATGCCGCGGCGT
GGAGCGCTGCCGGTGGAACCGGAGCGTCGCGCTTGGCGTGCGGGCGGCCG
CCGGACCTAATAGGCGCGGCTGTCGGGACAGCGCCGGGGTTGACGGGTTT
GTTACAGAATACTTACGGGGGTGGCGTTCTGCCCGGGCCATTGGCGTGGG
TGGCCGTCTGGCGCCGTTCGTTAGCGTGGCGGGCGCGAGGCGGGGGGGCG
GAGGGGGGTATCGTTTGACGAGGTGGGTCAAGGGAGAGCGGGTTGATTCA
TGGGATGGATGTTGGTGGGTGGGTGGGTGGACTCGCGCATCACGTGCGGT
CAAAAATCGCGTCTTATAAAAATATGGTATGATCCTGCTGTACAGTAGGA
ACATGTGAAAAATTAGTGGGAAGATTTTTTTCTCTCTCGTTTTTGCGCTC
CCGCCGGTGTCGTGTATTTGTTTTTATTGCACCGGCGTGTTTTGTGTGTG
TCTGGTGTGTGTGTTTATTTTATTTTGTTTTTTGCCGTTGGCCAGGTCCG
TGCCAGTCCGTCGTATTATATGATCAGGGAGTGTGCCCGTACAGCAGTCG
CGGTCGTATCGCTCTGACGAGGCCTTGTCGGTACCAGAAAATACGGCCTT
CGACGTGCGGCGCGTGTTTACACAATCTCGATCGTACAATACAGAACCAG
ATACATGTACATGTGTTGAACTCAGTTCATCGGCACTAGAGGCATGCCAG
GAGTGGTTGTATGTCGGTCCGCGGAAGCAGGGACGCCATAAATACATAAA
CGCTCGAAAGGCATGCAAAATAAAGGCGGCGGCACAGTATTAACATGCAC
AACGTAATGTAAGCCTCACAGGAACAAGCAATGAGGCCATTGAGCTTTCT
GACGACACACCCGCCCCGCGGGCAAAAAATAAAAATAAAAATAAACTAAA
TCAACCGTCCCCGACGGCAAACCACAGGCAACGTATTGATTGATTGATTG
ATTGATTGATTTGCACACGTATAGCCGATCGGCATAATCCGACCCNNNNN
NNNNNAGACACGCAAAGAGTCAAGGAGAAAAATAACTAATCAGAATTCTA
CTTCTACTATACACCGCCCCTGATACTTACTATGGTACAAGAAATAGGAA
ATAGCACCCCAGATATAGATAGTATTATAAAATATTAAATACGCTTGAGG
ATATAAAGCACAAGCACTACAGTACTATTCACTACATTCAACAACCAGTC
GTTATGCTCGTATCATACACATCAAACCATCGCACTCTATTTATATATAC
CAAGAGTGCACACAACGACACCGAACAGGTCTTCCAGCTTCCAGCATACT
ACTATACTATACCTGACCTACCTCAACCAGCAAAGTAGACACCATAGAGT
ACTAGTACTTGCACGGACATCTCTAACAACCCCGCATCCTTGACACCCAA
CACCTCCCTCTCTCCCTCCCTCCCTCTCCCACACACCTTGTCTGTCCCCC
CCCCTGCAGCCGGCTCGCGCCCCCATCAAACCCCCCTCCACCCGCGACGA
TCCCCGCCGAGTTTGTCATCGACGGCACTCTCGCGTTCAGAGCTCCTCCC
CTCCCAAATACCCCACAACCTCGCTGCAGCTGCTGCTGACCACCTCCCGC
TTTATTAAACTTCGCCAGTAGCTCTTCCCGCCGTCCGGAGGGGGGAGGCT
GAGAGTGTGGCATCATCGCTCGACCCGTGCCCGCCCCTCCCCCGCCGTCC
CCGCCACTGCACCCGCCGGGCTGCTGCTGCTGAGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10642:1188..6722-

>mRNA_S-dermatodea_contig10642.450.1 ID=mRNA_S-dermatodea_contig10642.450.1|Name=mRNA_S-dermatodea_contig10642.450.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig10642:1188..6722- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCACCAGGACACGGGGCATGGACAAGGACGCCTGAAACACGACAGAAG
CAAACCAGATGCACCAGGACACGGGGCATGGACAAGGACGCCTGAAACAC
GACAGAAGCAAACCAGCCGGCTCGCGCCCCCATCAAACCCCCCTCCACCC
GCGACGATCCCCGCCGAGTTTGTCATCGACGGCACTCTCGCGTTCAGAGC
TCCTCCCCTCCCAAATACCCCACAACCTCGCTGCAGCTGCTGCTGACCAC
CTCCCGCTTTATTAACCGGCTCGCGCCCCCATCAAACCCCCCTCCACCCG
CGACGATCCCCGCCGAGTTTGTCATCGACGGCACTCTCGCGTTCAGAGCT
CCTCCCCTCCCAAATACCCCACAACCTCGCTGCAGCTGCTGCTGACCACC
TCCCGCTTTATTAA
back to top