mRNA_S-dermatodea_contig10640.446.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10640.446.1
Unique NamemRNA_S-dermatodea_contig10640.446.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10640.446.1 vs. uniprot
Match: D7FWV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV3_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 6.050e-30
Identity = 72/132 (54.55%), Postives = 85/132 (64.39%), Query Frame = 3 
Query:    3 GAVGSAREPTLTFKQLMAWDEVQELLDYGALKTSEVQSIWDEAVSVQQAE---GAGKASKTVDIWGSSR------------ASSGSSKVPAQTALTQRGFMILVKLIEELQFEKELEQEKGVGLVPGPVYVV 353
            GA G   E TL+F+QLM WDEVQELL++GALK  E+ ++W EA   Q AE   G    ++T DIWGS              +  G S    +  LT +GFMILVKLIEELQFEKELEQ+KGVGLVPGPV VV
Sbjct: 1093 GAFGE--ESTLSFRQLMGWDEVQELLEFGALKEGELTTLWQEAARAQDAELGTGGDPRAQTTDIWGSGSPGAANAAAAAPGSQEGGSGGSTRDVLTVKGFMILVKLIEELQFEKELEQDKGVGLVPGPVCVV 1222
[Close]
BLAST of mRNA_S-dermatodea_contig10640.446.1 vs. uniprot
Match: A0A6H5KHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT2_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.570e-29
Identity = 71/132 (53.79%), Postives = 83/132 (62.88%), Query Frame = 3 
Query:    6 AVGS-AREPTLTFKQLMAWDEVQELLDYGALKTSEVQSIWDEAVSVQQAE---GAGKASKTVDIWGSSR------------ASSGSSKVPAQTALTQRGFMILVKLIEELQFEKELEQEKGVGLVPGPVYVV 353
            AVGS   E TL+F QLM WDEVQELL+YGALK  E+ ++W +A   Q AE   G    ++  DIWGS              +  G S    +  LT +GFMILVKLIEELQFEKELEQ+KGVGL PGPV VV
Sbjct: 1784 AVGSFGEESTLSFNQLMGWDEVQELLEYGALKEEELTALWQDAARAQDAELGTGGDPRARATDIWGSGSPGAANAGAAAPGSQEGGSSGSTRDVLTVKGFMILVKLIEELQFEKELEQDKGVGLAPGPVCVV 1915
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10640.446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWV3_ECTSI6.050e-3054.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHT2_9PHAE1.570e-2953.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10640contigS-dermatodea_contig10640:2120..3514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size381
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10640.446.1prot_S-dermatodea_contig10640.446.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10640 2145..3006 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.3058257-UTR-S-dermatodea_contig10640:2119..21441622924167.3058257-UTR-S-dermatodea_contig10640:2119..2144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 2120..2144 -
1694079063.7454677-UTR-S-dermatodea_contig10640:2119..21441694079063.7454677-UTR-S-dermatodea_contig10640:2119..2144Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 2120..2144 -
1622924167.3469315-UTR-S-dermatodea_contig10640:3006..30091622924167.3469315-UTR-S-dermatodea_contig10640:3006..3009Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 3007..3009 -
1694079063.772811-UTR-S-dermatodea_contig10640:3006..30091694079063.772811-UTR-S-dermatodea_contig10640:3006..3009Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 3007..3009 -
1622924167.3601851-UTR-S-dermatodea_contig10640:3467..35141622924167.3601851-UTR-S-dermatodea_contig10640:3467..3514Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 3468..3514 -
1694079063.7824802-UTR-S-dermatodea_contig10640:3467..35141694079063.7824802-UTR-S-dermatodea_contig10640:3467..3514Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 3468..3514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.3260207-CDS-S-dermatodea_contig10640:2144..23751622924167.3260207-CDS-S-dermatodea_contig10640:2144..2375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10640 2145..2375 -
1694079063.7557764-CDS-S-dermatodea_contig10640:2144..23751694079063.7557764-CDS-S-dermatodea_contig10640:2144..2375Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10640 2145..2375 -
1622924167.3360553-CDS-S-dermatodea_contig10640:2931..30061622924167.3360553-CDS-S-dermatodea_contig10640:2931..3006Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10640 2932..3006 -
1694079063.764031-CDS-S-dermatodea_contig10640:2931..30061694079063.764031-CDS-S-dermatodea_contig10640:2931..3006Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10640 2932..3006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10640.446.1

>prot_S-dermatodea_contig10640.446.1 ID=prot_S-dermatodea_contig10640.446.1|Name=mRNA_S-dermatodea_contig10640.446.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
MAWDEVQELLDYGALKTSEVQSIWDEAVSVQQAEGAGKASKTVDIWGSSR
ASSGSSKVPAQTALTQRGFMILVKLIEELQFEKELEQEKGVGLVPGPVYV
V*
back to top

mRNA from alignment at S-dermatodea_contig10640:2120..3514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10640.446.1 ID=mRNA_S-dermatodea_contig10640.446.1|Name=mRNA_S-dermatodea_contig10640.446.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1395bp|location=Sequence derived from alignment at S-dermatodea_contig10640:2120..3514- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAGCTGTAGGGTCCGCGAGGGAGCCGACGCTGACCTTTAAGCAGGTA
TGAGGTGTGCGGAGCCGGTAGTTTTAAGGTGTTGGTTTTGCTTGTTGATG
TGGAGGGGGGGGCAGGCGTGAATGCCGGTTTGTGTGTGTTATCTCCTTAT
GCTGTCCTCGTGCTTGCTTACTCGATTACTCGACGCAGCGCGCGCGGAGC
TCAAAGCAAATTACAGTTTTGCGACACTACTTAAAACAGTAAATCGCGCA
CTTTGTTTTAAACGCCCCGTCCTTTTTCTTCACTTCCGTCCTCAAGAACG
TGCCCGCTTGATTTTTCGCCGATCAACTATTCAGTATATATCACACCCGC
ATTAAGCACGTTCACCATAAGCCCTTTCGCTCTCTTGTCTCACACCCACT
CTTTTATCCTTCCCTATTTTTATCGCCTTTCGCCTTTGCTGTGCCTTGGC
CACGCCGTCTCTCCCCGGTCGCTGCGCTCCTGGGATCCCCGCGCGGCGCG
ATCAGCTCATGGCATGGGACGAGGTGCAAGAGCTCCTGGACTACGGCGCT
CTCAAGACGTCCGAAGTGCAGAGCATCTGGGATGTGCGTTCGGCTTGAAA
TGGGCTCGCGTGTGTTGCTGGTTGTCGTGATGTCCCGATTTATTGACCGT
TTCTATTATAGTCGGGGACTAATTGATACAGCAGTATCTTATTTATTTCG
TTTATCTGTCGATAGGATATGCTTTGAGAGTGATGCTTTTGCTATCATAC
ACAACATGGCGATGAGCTCGCGTCTGTTTCTTGTTTGAGTCGCCGCCGCG
TGTTGTTGCTTGTTACTGTTGTTATTATACTACTACAGTATTTCTTATAA
CAACAGCACGGAAACATTGGGTGTGGGATAAGTCGTGTAGCTCGTCTTTC
GGCCGAACGAGTTTTTACCGACCCCCCGGCACACGAGTAGTCAGAACGTC
ATGCATACCTAGGAGCATAATTTGGAACGAAACAAACAACGCACGGAAGC
CGAACGCTCTTGCTCTCTCATGAGTGAAACATACACCCGCCCTCGATTGC
TTCCTCCTTCTTGTATTTTTCTGATGACCCCGCCTCGCCCCCGTCCCCCC
ATCTTCACAATCGAAACCCTCGCCCCACTCGAAATGCAGGAGGCTGTGAG
TGTACAGCAAGCGGAGGGCGCCGGAAAAGCCAGCAAGACCGTTGACATCT
GGGGCAGCAGCCGCGCGAGCTCGGGGAGTAGCAAGGTACCGGCGCAGACG
GCGTTGACGCAGAGGGGTTTCATGATCCTGGTGAAACTTATCGAGGAGCT
CCAGTTCGAGAAGGAGCTGGAGCAGGAGAAAGGGGTAGGACTCGTGCCGG
GTCCGGTCTACGTGGTTTAGTTTAGTTTTTGTCTCTCTCGTGGTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10640:2120..3514-

>mRNA_S-dermatodea_contig10640.446.1 ID=mRNA_S-dermatodea_contig10640.446.1|Name=mRNA_S-dermatodea_contig10640.446.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig10640:2120..3514- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCATGGGACGAGGTGCAAGAGCTCCTGGACTACGGCGCTCTCAAGAC
GTCCGAAGTGCAGAGCATCTGGGATATGGCATGGGACGAGGTGCAAGAGC
TCCTGGACTACGGCGCTCTCAAGACGTCCGAAGTGCAGAGCATCTGGGAT
GAGGCTGTGAGTGTACAGCAAGCGGAGGGCGCCGGAAAAGCCAGCAAGAC
CGTTGACATCTGGGGCAGCAGCCGCGCGAGCTCGGGGAGTAGCAAGGTAC
CGGCGCAGACGGCGTTGACGCAGAGGGGTTTCATGATCCTGGTGAAACTT
ATCGAGGAGCTCCAGTTCGAGAAGGAGCTGGAGCAGGAGAAAGGGGTAGG
ACTCGTGCCGGGTCCGGTCTACGTGGTTTAGGAGGCTGTGAGTGTACAGC
AAGCGGAGGGCGCCGGAAAAGCCAGCAAGACCGTTGACATCTGGGGCAGC
AGCCGCGCGAGCTCGGGGAGTAGCAAGGTACCGGCGCAGACGGCGTTGAC
GCAGAGGGGTTTCATGATCCTGGTGAAACTTATCGAGGAGCTCCAGTTCG
AGAAGGAGCTGGAGCAGGAGAAAGGGGTAGGACTCGTGCCGGGTCCGGTC
TACGTGGTTTAG
back to top