mRNA_S-dermatodea_contig10640.447.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10640.447.1
Unique NamemRNA_S-dermatodea_contig10640.447.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10640.447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10640contigS-dermatodea_contig10640:5127..5946 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size354
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10640.447.1prot_S-dermatodea_contig10640.447.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10640 5127..5927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.1961567-CDS-S-dermatodea_contig10640:5126..53911622924167.1961567-CDS-S-dermatodea_contig10640:5126..5391Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10640 5127..5391 -
1694079063.6907527-CDS-S-dermatodea_contig10640:5126..53911694079063.6907527-CDS-S-dermatodea_contig10640:5126..5391Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10640 5127..5391 -
1622924167.206242-CDS-S-dermatodea_contig10640:5838..59271622924167.206242-CDS-S-dermatodea_contig10640:5838..5927Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10640 5839..5927 -
1694079063.700614-CDS-S-dermatodea_contig10640:5838..59271694079063.700614-CDS-S-dermatodea_contig10640:5838..5927Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10640 5839..5927 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924167.2198927-UTR-S-dermatodea_contig10640:5927..59461622924167.2198927-UTR-S-dermatodea_contig10640:5927..5946Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 5928..5946 -
1694079063.7114663-UTR-S-dermatodea_contig10640:5927..59461694079063.7114663-UTR-S-dermatodea_contig10640:5927..5946Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10640 5928..5946 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10640.447.1

>prot_S-dermatodea_contig10640.447.1 ID=prot_S-dermatodea_contig10640.447.1|Name=mRNA_S-dermatodea_contig10640.447.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=118bp
MMSLGSSTNGGADGGVSGGGEASSPSEAPSRPAEESPVRKTRTDRWSLKR
SKSSAKNSPVPASSASSPRPQESKPEFPEGAQDADARGKPSTDGKLSPGK
INAKAAAKLTARTAAATT
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mRNA from alignment at S-dermatodea_contig10640:5127..5946-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10640.447.1 ID=mRNA_S-dermatodea_contig10640.447.1|Name=mRNA_S-dermatodea_contig10640.447.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=820bp|location=Sequence derived from alignment at S-dermatodea_contig10640:5127..5946- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGCGCAGCTGGAAGAGGATGATGAGCCTGGGGTCGTCGACCAATGGTG
GCGCGGACGGTGGGGTTAGTGGAGGAGGCGAGGCTTCCTCCCCGTCTGAA
GCTCCGAGGTGCGTTCAACTTTGGTGGCTTTTATCTTTAGGTTCAGGTTT
TTGTTGTTGATAAATCGATATTATGCAGGGGAGGGGGGATTGGAGGGGAC
ATTCCGTATTTCACGGGGGTGTGCGGTTCGAAATGCAGTACGAGTACACG
CACGCTGCTGCTGTGTTGCGGTCACGGTTCGGCAACAGTAGCTACAATCC
AGTGACACGAAGCCATCGCTGGCCACAGCCAACCACAGCTCTTGTGTAAC
ACACACAGTACACAGCCCACCACTCAGCACAATTTTACGACACATTGGTG
GTACCACCTGGCATGTAAGGTTAACCTGCCCGAAAACGACCCTCCACCTT
CCTTAATGCCCTGCTGCTTACTGCGGGGGACCCATTTAATTTACGCCCTC
GCTGCTCTGCCCTTCTCCTCGCTTCCGTTGTCTTTTTCGTGTACTTAACG
CGTAGCCGACCCGCCGAGGAATCGCCAGTCCGCAAGACCCGGACCGACCG
GTGGTCGCTAAAGAGATCCAAGTCGAGCGCGAAGAACTCTCCCGTCCCGG
CCTCGTCAGCATCGTCACCGCGCCCCCAGGAGTCGAAGCCCGAGTTCCCC
GAAGGTGCGCAGGATGCCGATGCCCGGGGTAAACCTTCGACCGACGGCAA
GCTGTCCCCCGGCAAGATCAACGCCAAGGCCGCCGCGAAGTTAACCGCTC
GAACAGCGGCCGCAACGACT
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Coding sequence (CDS) from alignment at S-dermatodea_contig10640:5127..5946-

>mRNA_S-dermatodea_contig10640.447.1 ID=mRNA_S-dermatodea_contig10640.447.1|Name=mRNA_S-dermatodea_contig10640.447.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at S-dermatodea_contig10640:5127..5946- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGAGCCTGGGGTCGTCGACCAATGGTGGCGCGGACGGTGGGGTTAG
TGGAGGAGGCGAGGCTTCCTCCCCGTCTGAAGCTCCGAGATGATGAGCCT
GGGGTCGTCGACCAATGGTGGCGCGGACGGTGGGGTTAGTGGAGGAGGCG
AGGCTTCCTCCCCGTCTGAAGCTCCGAGCCGACCCGCCGAGGAATCGCCA
GTCCGCAAGACCCGGACCGACCGGTGGTCGCTAAAGAGATCCAAGTCGAG
CGCGAAGAACTCTCCCGTCCCGGCCTCGTCAGCATCGTCACCGCGCCCCC
AGGAGTCGAAGCCCGAGTTCCCCGAAGGTGCGCAGGATGCCGATGCCCGG
GGTAAACCTTCGACCGACGGCAAGCTGTCCCCCGGCAAGATCAACGCCAA
GGCCGCCGCGAAGTTAACCGCTCGAACAGCGGCCGCAACGACTCCGACCC
GCCGAGGAATCGCCAGTCCGCAAGACCCGGACCGACCGGTGGTCGCTAAA
GAGATCCAAGTCGAGCGCGAAGAACTCTCCCGTCCCGGCCTCGTCAGCAT
CGTCACCGCGCCCCCAGGAGTCGAAGCCCGAGTTCCCCGAAGGTGCGCAG
GATGCCGATGCCCGGGGTAAACCTTCGACCGACGGCAAGCTGTCCCCCGG
CAAGATCAACGCCAAGGCCGCCGCGAAGTTAACCGCTCGAACAGCGGCCG
CAACGACT
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