mRNA_S-dermatodea_contig10576.401.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10576.401.1
Unique NamemRNA_S-dermatodea_contig10576.401.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10576.401.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.480e-28
Identity = 61/116 (52.59%), Postives = 77/116 (66.38%), Query Frame = 1 
Query:   13 EPPSVEREAALMEMKTDNDVDEDGNLVLHTFWDKAGAPRMGQDAVINTERFWEVMSSHFAEDHKDGWLQRLATFEHLPKGDDDPVFVVPEP--------------SKGDKAKQKMG 318
            EP  V++  ALM  K D D+D+DGNLVLHTFWDKAGAPR+GQ++ +  ERFWEVM+ +F E H  GWL +L   EHLPK +DDP +V+PEP              ++GD AKQ  G
Sbjct:  302 EPDCVDKPGALMGRKADPDIDDDGNLVLHTFWDKAGAPRIGQES-LTCERFWEVMAGYFPEGHSPGWLGKLLDIEHLPK-EDDPAYVIPEPRQKXXXXXXXXXXXTEGDNAKQPKG 415
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10576.401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV42_ECTSI1.480e-2852.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10576contigS-dermatodea_contig10576:182..4170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue2.8e-25
Seed eggNOG ortholog2880.D7FV42
Preferred namePHF14
KEGG koko:K02606,ko:K11380,ko:K22156,ko:K22184
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007154,GO:0007267,GO:0007275,GO:0008150,GO:0008285,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010464,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010640,GO:0010642,GO:0010646,GO:0010648,GO:0019219,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030323,GO:0030324,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035295,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045165,GO:0045168,GO:0045892,GO:0045934,GO:0046331,GO:0048286,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060541,GO:0065007,GO:0072201,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000112,GO:2000113,GO:2000583,GO:2000584,GO:2000790,GO:2000791,GO:2001141
EggNOG free text desc.negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
EggNOG OGsCOG5141@1,KOG0954@2759,KOG0955@2759,KOG0957@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size434
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10576.401.1prot_S-dermatodea_contig10576.401.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10576 182..4170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924163.7826405-CDS-S-dermatodea_contig10576:181..2891622924163.7826405-CDS-S-dermatodea_contig10576:181..289Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10576 182..289 -
1694079061.302899-CDS-S-dermatodea_contig10576:181..2891694079061.302899-CDS-S-dermatodea_contig10576:181..289Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10576 182..289 -
1622924163.792223-CDS-S-dermatodea_contig10576:1679..17661622924163.792223-CDS-S-dermatodea_contig10576:1679..1766Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10576 1680..1766 -
1694079061.3153083-CDS-S-dermatodea_contig10576:1679..17661694079061.3153083-CDS-S-dermatodea_contig10576:1679..1766Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10576 1680..1766 -
1622924163.8093204-CDS-S-dermatodea_contig10576:3003..31321622924163.8093204-CDS-S-dermatodea_contig10576:3003..3132Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10576 3004..3132 -
1694079061.3242838-CDS-S-dermatodea_contig10576:3003..31321694079061.3242838-CDS-S-dermatodea_contig10576:3003..3132Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10576 3004..3132 -
1622924163.8200455-CDS-S-dermatodea_contig10576:4062..41701622924163.8200455-CDS-S-dermatodea_contig10576:4062..4170Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10576 4063..4170 -
1694079061.333583-CDS-S-dermatodea_contig10576:4062..41701694079061.333583-CDS-S-dermatodea_contig10576:4062..4170Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10576 4063..4170 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10576.401.1

>prot_S-dermatodea_contig10576.401.1 ID=prot_S-dermatodea_contig10576.401.1|Name=mRNA_S-dermatodea_contig10576.401.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=144bp
EETEEPPSVEREAALMEMKTDNDVDEDGNLVLHTFWDKAGAPRMGQDAVI
NTERFWEVMSSHFAEDHKDGWLQRLATFEHLPKGDDDPVFVVPEPSKGDK
AKQKMGAKDGSVVDGGDSDGSISMDDVMDVDIDEEDEDDYNRRR
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mRNA from alignment at S-dermatodea_contig10576:182..4170-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10576.401.1 ID=mRNA_S-dermatodea_contig10576.401.1|Name=mRNA_S-dermatodea_contig10576.401.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3989bp|location=Sequence derived from alignment at S-dermatodea_contig10576:182..4170- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGAAACGGAGGAGCCCCCGAGCGTGGAGCGGGAGGCTGCCTTGATGGA
GATGAAGACGGACAACGACGTGGACGAAGATGGTAACCTCGTGCTCCACA
CGTTCTGGGTGAGCGAAACAAAGTGTTGCCTCTGCCATACGATAAGGACA
ACGGTGACTTCGACTGGAGCAGTGATGAGGACGGTGGTGATATGGTGTTG
CTAATAAATATTGTGATGATGATGGTGATGGTGGTGATGATGATGTTGGT
GGTGATGATGACGATGATGATGATGGTGATGATGATGATGATGATGATGA
TGGTGATGATGACGATGAAGACGATGTTGAGGGTGTTGATGATGATGATG
ATGGTAGTAATGGTGGTGATGATGAAGATGATGACGTTGGTGGTGTTGGT
GATGGAGATGTCGGTGATGATGGTCTCACGGTAACTGACCTATCTCGAAA
TCCAGCATCTCTCTGTTTGCAATAATAGTAACAAAACACATTTCCGTGGT
GCGTCTCAACATCATCGACGGATCCAAGGTAACTTAGCGGGAATCACCTT
GCGATAATAAAGATGCCAATGAGACCTATTACACAATACTATTTTACTGT
CATGTAGCACCTCTTTGTGTGTGCGCGTGCAACCAAAGAAGGGGAAGGGG
GGGGGTATTTGATATTTTCCCGTTGGGATGCGCCCGCAGGCACGTGGGTT
TGTTTTATCGCCCTGCGTACCGCAGCGGCTCTTCGCCAAGTGGTACGGTA
GGCACCATGGGGGTGTTTGCGATTCGGACTGACTGGATTTCTATTCCATT
CTATTTCGCTTTCGTACGTGTCCTTTTCGTGATTCCCACGGAAAGAGTTT
CGTGACAAATTTCCGTGGTCCATCCTTGTTTGTGTTTCTTTGGGGAAAAT
TTTTTTCGCCCCGTCCCGTCCCGGTATTGTTGGGACGCGTTGTCCATCCA
TGTCTTTCCCGATACCACGTGCTTTTAACGTACCCCCCCCCCCCCCCTCC
CTCGCCAACCTTGCGTTTTTTTTTTCTTGAATTCAAAGGACAAGGCGGGG
GCTCCTCGGATGGGCCAGGATGCTGTTATCAACACCGAGCGGTTTTGGGA
AGTGATGTCTAGCCACTTCGCCGAGGACCACAAGGATGGTTGGCTGCAGC
GTCTTGCCACCTTCGAGGTTTGTTTCGAGTTTCCGAGGCTTTTTCAAGTC
CCTCGATCTAAAAAAATACATATATCTTGTTTGTGAGGACACGGTGGGGT
CCAACACACGGTCCAGAGGTTGCAAGACCCTAGGCAGCCCAGATTATATT
TTCAGCGGGTAGCGAGGAGCACTCCAATATCGCCCTAATGTCAAATCTAT
TATCACTCTAATACCACCATAGTATCACCATACTATCACCAGAATACTAT
GTAGCTGGGTATTGGTCCCGTTCTTGGTCCTGCTGATCTTGTGATCGTTC
AGAGGCGATCAGCCTCGGCCATGGATATTGGAAACCTACGGGATGTGCGT
GTAGGGGACAAGAGCTATTTCCGTGGAATCATATGCTCTCCACAGTACCC
CCCTCTTTATGTGCCTCAAGCATGTTAATGGTTGAGGCGGCTTGCTTGGG
GGTGAAGTTTGAGTATACGCTCTCCATATTTGTTCTTATTTATTTGTTTT
TACATTTGTTTTTGGACAAATGCGCGGTAACAACCATCACATCTCCCACC
CCCCCCCCCCCCCCCCCCCCCGCGTGTTGTTTTTTTTTATTTTTTTTTTT
TTTTTTTTTTTTTTTTTTCTTTTTTTTTTGGAAAAACCCCCGGAAACAAC
CCCCCCACCCCCCCCCCCCCCCCCCCCGACCGGAGTGTTTTGTATTTTAA
TAGCGATTAGACTTGACCTTTGATGCCGAATTTACTATACAATTCGTGAC
GCCAATTGCCATTGGGATTTTAGAGTGGTGCGTTACAGAGTAGTACATTT
TGTCCCAACGCACATTATTATGAGAGTTACCTGTAAATCAGGCGGCGTGC
GGGTCACTGTATATCTCTCTGTCATGTCTGGACATCAGTATTTTGTTCGG
TGTATGATAGGGGGTGCTGGATTTCAATTAATACTATTAATAGCTCTTGT
CATAGTGCCTTCATGTGACCTCAAGATAGCGGGATCAGCATCCATACACC
TTTACAATTGCAAAAATGGCGGGCCGGTCGGTTACATGTGTGAGAATCAA
TCGAATCAAAATCAATCGCGCACGTCACGTCACGTCACGTCACGGGCGTC
GCCGTGGCCACCCCACTGTAATAGTTTCTTCAACACGAAACAGATTCAGC
TGCGCCCCCAACCCCGACCCCCTGCCGCCACGCCGACGCAATCCTCCAAA
CCCTTACCGCCGTTTTTATGTCATTGTATCATCGCTTCCGTTCGCCGCGT
GCAGCACCTACCAAAGGGCGACGATGACCCAGTCTTCGTTGTTCCCGAGC
CGTCCAAAGGAGACAAGGCCAAGCAGAAGATGGGGGCGAAGGTGGGGCAT
TTTTTCTTGTCGCCTGTCTGTCTTGTCTTTTCTTGTCTTTTTTTGTACCG
TGGCATACCGCGCGCCCCGTGGTTAAACTGGCGACCAACAGCCCAGTAAG
CGGAGGACCGGGGTTCGAATCCCGGCAGAGTCGATATTTATTTATTATCT
CTACGTACCTCCGCCGCCGCGGAAAGCGCGAGAGCGCGAGTAAGCAAAAT
CCGATAAATCGGCTATAGAGCTGCGGGAGGGAGTGCCGGACCCAATGGAA
TCGCGTTAAAAATCAAAGGTGAGAACCGAACCGGGGATAAGAGAAATGGG
ATGATCCCTTGTGACCACAGATGGACCTCGGAAAAGCAAGTCTATCATAT
GTGTGCCAAAAAATAAATAATAAAATAATGATGTTTTTCGCGATTGGTTG
TTTTGTACCGTATGCGTGTGTTCGCGTGTGTGTGTGCACTGCACTGTCGG
TTTCTTCCAATGAAAACGCGACCGCGATCAGGGTATCGATCCAATTCTCC
CTTGAGCATACGCCCTTGCTCCACGGACAATAAATATGCTTGCGTGTGTG
CGTGTGTAGACAGACTGTTGTACCCCCCTAAATGAGCAGTATACCTATCC
TTATTAATTATTGCAAGAGTCAACCATTTTTGTATACTATTACACAATAA
AGCCTAGGCCATACTAAATTACATACGATTTTTTACATTTTCAAACTGAC
GCCAGATGGATTTACGAAATTCTTTTTCAAACTGACGCCAGATCGACATA
CTGAATTCCATACGATTTACATTTTCAAATGCCTCTGTACGAATTGTATT
TTGATTGCACAGCAGTAGGTAGCCACACTTGATTGCTCCCCGCTCTGCCG
CGGTCGACCGCCGCCGGCATATCGTTCTGTCAACGCACACACCTCACGGG
CGTAGCCGTGGCTATTAATACCTACTAGTGGTACTTAATTAAAGAAGAAG
GGGCGGTGCCCACACCTCGTCCCCTCATTTGTTTTCCCTCCATGCTACTG
TACATTATGTATTATATACAGCAGTACTGTAGTAAATACATGATAAAAAG
GACGATTTTCTCGCCCATTCGTCTGTCGTAGGCGCTTTCCCCCCCTGTTC
TACCGTATTCCACGCCAAATCATGTCACAGCATGACACATGTAGCACACC
ATGAGACATGTCATGCCGGTAACGCACAAAACGAAATAATGGAACCTACC
GAATCGTACGCTACCCGCCCGCCATTAGCACACGATATTCCGTTGCCAGC
CACACACACTCAAATTATCCCACCGATACAATGTTATACACCGCACCATT
ATACCGTTCTACTGTGCCAGATATCTTGTCTCACTCGTTCGCCTTCCGTT
TCGCCTTGCCGCCCCGCCCCATCCAACGCAGGACGGGAGCGTGGTGGACG
GAGGAGACAGCGACGGTTCGATCTCCATGGATGATGTGATGGACGTTGAT
ATTGACGAGGAAGACGAGGATGACTATAACCGCCGGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10576:182..4170-

>mRNA_S-dermatodea_contig10576.401.1 ID=mRNA_S-dermatodea_contig10576.401.1|Name=mRNA_S-dermatodea_contig10576.401.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at S-dermatodea_contig10576:182..4170- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGGAAACGGAGGAGCCCCCGAGCGTGGAGCGGGAGGCTGCCTTGATGGA
GATGAAGACGGACAACGACGTGGACGAAGATGGTAACCTCGTGCTCCACA
CGTTCTGGGAGGAAACGGAGGAGCCCCCGAGCGTGGAGCGGGAGGCTGCC
TTGATGGAGATGAAGACGGACAACGACGTGGACGAAGATGGTAACCTCGT
GCTCCACACGTTCTGGGACAAGGCGGGGGCTCCTCGGATGGGCCAGGATG
CTGTTATCAACACCGAGCGGTTTTGGGAAGTGATGTCTAGCCACTTCGCC
GAGGACCACAAGGATGGTTGGCTGCAGCGTCTTGCCACCTTCGAGGACAA
GGCGGGGGCTCCTCGGATGGGCCAGGATGCTGTTATCAACACCGAGCGGT
TTTGGGAAGTGATGTCTAGCCACTTCGCCGAGGACCACAAGGATGGTTGG
CTGCAGCGTCTTGCCACCTTCGAGCACCTACCAAAGGGCGACGATGACCC
AGTCTTCGTTGTTCCCGAGCCGTCCAAAGGAGACAAGGCCAAGCAGAAGA
TGGGGGCGAAGCACCTACCAAAGGGCGACGATGACCCAGTCTTCGTTGTT
CCCGAGCCGTCCAAAGGAGACAAGGCCAAGCAGAAGATGGGGGCGAAGGA
CGGGAGCGTGGTGGACGGAGGAGACAGCGACGGTTCGATCTCCATGGATG
ATGTGATGGACGTTGATATTGACGAGGAAGACGAGGATGACTATAACCGC
CGGAGGGACGGGAGCGTGGTGGACGGAGGAGACAGCGACGGTTCGATCTC
CATGGATGATGTGATGGACGTTGATATTGACGAGGAAGACGAGGATGACT
ATAACCGCCGGAGG
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