mRNA_S-dermatodea_contig10573.400.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10573.400.1
Unique NamemRNA_S-dermatodea_contig10573.400.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10573.400.1 vs. uniprot
Match: A0A6H5K5X6_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.910e-12
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:  133 TFNCRGRHGLALFAAPSYL--ACDWCSRSLPMGSAAVGCRACDCDACMECAAANL 291
            +F+CR RHGL L+  P  L  ACDWC  SLP+G  AVGCRACD D C++CAA +L
Sbjct:  445 SFDCRLRHGLTLYTVPFGLPVACDWCGASLPLGYPAVGCRACDVDGCLDCAARSL 499
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BLAST of mRNA_S-dermatodea_contig10573.400.1 vs. uniprot
Match: D7G0S5_ECTSI (Calcium dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S5_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.460e-11
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:  133 TFNCRGRHGLALFAAPSYL--ACDWCSRSLPMGSAAVGCRACDCDACMECAAANL 291
            +F+CR RHGL L+  P  L  ACDWC  S+P G  AVGCRACD D C++CAA +L
Sbjct:  426 SFDCRLRHGLTLYTVPFGLPVACDWCGASVPPGYPAVGCRACDVDGCLDCAARSL 480
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10573.400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5X6_9PHAE3.910e-1260.00EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7G0S5_ECTSI3.460e-1158.18Calcium dependent protein kinase n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10573contigS-dermatodea_contig10573:5276..5583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size310
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924163.7498386-CDS-S-dermatodea_contig10573:5275..55811622924163.7498386-CDS-S-dermatodea_contig10573:5275..5581Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10573 5276..5581 +
1694079061.2928545-CDS-S-dermatodea_contig10573:5275..55811694079061.2928545-CDS-S-dermatodea_contig10573:5275..5581Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10573 5276..5581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10573.400.1prot_S-dermatodea_contig10573.400.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10573 5276..5581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10573.400.1

>prot_S-dermatodea_contig10573.400.1 ID=prot_S-dermatodea_contig10573.400.1|Name=mRNA_S-dermatodea_contig10573.400.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
FRRCDCDACAECSGITPHLPPPPLPAEIPVAIPLAPLSSKDPGGTFNCRG
RHGLALFAAPSYLACDWCSRSLPMGSAAVGCRACDCDACMECAAANLGVY
CA
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mRNA from alignment at S-dermatodea_contig10573:5276..5583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10573.400.1 ID=mRNA_S-dermatodea_contig10573.400.1|Name=mRNA_S-dermatodea_contig10573.400.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=308bp|location=Sequence derived from alignment at S-dermatodea_contig10573:5276..5583+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCAGGCGCTGCGACTGCGATGCTTGCGCGGAGTGTTCCGGGATAACACC
ACACCTCCCCCCTCCACCCCTACCTGCTGAAATCCCGGTGGCGATTCCCC
TTGCCCCCCTGTCATCTAAAGACCCTGGTGGGACCTTCAACTGTCGTGGT
CGCCATGGGCTAGCCCTCTTCGCTGCACCGTCATACTTAGCATGTGACTG
GTGCTCCCGCTCTTTACCCATGGGCAGCGCAGCGGTAGGGTGCCGAGCAT
GTGACTGCGATGCCTGCATGGAGTGCGCTGCCGCAAACCTAGGGGTGTAT
TGCGCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10573:5276..5583+

>mRNA_S-dermatodea_contig10573.400.1 ID=mRNA_S-dermatodea_contig10573.400.1|Name=mRNA_S-dermatodea_contig10573.400.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig10573:5276..5583+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCAGGCGCTGCGACTGCGATGCTTGCGCGGAGTGTTCCGGGATAACACC
ACACCTCCCCCCTCCACCCCTACCTGCTGAAATCCCGGTGGCGATTCCCC
TTGCCCCCCTGTCATCTAAAGACCCTGGTGGGACCTTCAACTGTCGTGGT
CGCCATGGGCTAGCCCTCTTCGCTGCACCGTCATACTTAGCATGTGACTG
GTGCTCCCGCTCTTTACCCATGGGCAGCGCAGCGGTAGGGTGCCGAGCAT
GTGACTGCGATGCCTGCATGGAGTGCGCTGCCGCAAACCTAGGGGTGTAT
TGCGCGTTCAGGCGCTGCGACTGCGATGCTTGCGCGGAGTGTTCCGGGAT
AACACCACACCTCCCCCCTCCACCCCTACCTGCTGAAATCCCGGTGGCGA
TTCCCCTTGCCCCCCTGTCATCTAAAGACCCTGGTGGGACCTTCAACTGT
CGTGGTCGCCATGGGCTAGCCCTCTTCGCTGCACCGTCATACTTAGCATG
TGACTGGTGCTCCCGCTCTTTACCCATGGGCAGCGCAGCGGTAGGGTGCC
GAGCATGTGACTGCGATGCCTGCATGGAGTGCGCTGCCGCAAACCTAGGG
GTGTATTGCGCG
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