mRNA_S-dermatodea_contig10565.394.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10565.394.1
Unique NamemRNA_S-dermatodea_contig10565.394.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10565.394.1 vs. uniprot
Match: D8LND3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LND3_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.910e-11
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 1 
Query: 1246 EDEEDPSVDDNGFVLKVAGGMTALVGLIAVGVWTVNRRRTSRLRGEFQGVRHRGLEEADNL 1428
            ++EEDPSVDDN FVLK   G+  LV + AVGV+ + RRRT  LRGEFQGV HRGL + D+L
Sbjct:  280 DEEEDPSVDDNSFVLKFGAGLMVLVAIGAVGVFVMRRRRTQGLRGEFQGVPHRGLTDEDSL 340
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BLAST of mRNA_S-dermatodea_contig10565.394.1 vs. uniprot
Match: A0A6H5KT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT56_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.460e-7
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1 
Query: 1246 EDEEDPSVDDNGFVLKVAGGMTALVGLIAVGVWTVNRRRTSRLRGEFQGVRHRGLEEADNL 1428
            ++E+DPSVDDN +VLK    +  LV + A GV+ + RRR   LRGEFQGV HRGL + D+L
Sbjct:  445 DEEKDPSVDDNSYVLKFGAVLMVLVAVGAAGVFVMRRRRIQGLRGEFQGVPHRGLTDEDSL 505
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10565.394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LND3_ECTSI2.910e-1162.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT56_9PHAE1.460e-754.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10565contigS-dermatodea_contig10565:3364..6251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004270.1
Exons2
Model size2406
Cds size1368
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10565.394.1prot_S-dermatodea_contig10565.394.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10565 4339..6188 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924163.355799-UTR-S-dermatodea_contig10565:3363..43381622924163.355799-UTR-S-dermatodea_contig10565:3363..4338Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10565 3364..4338 -
1694079061.0260391-UTR-S-dermatodea_contig10565:3363..43381694079061.0260391-UTR-S-dermatodea_contig10565:3363..4338Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10565 3364..4338 -
1622924163.3862882-UTR-S-dermatodea_contig10565:6188..62511622924163.3862882-UTR-S-dermatodea_contig10565:6188..6251Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10565 6189..6251 -
1694079061.0556736-UTR-S-dermatodea_contig10565:6188..62511694079061.0556736-UTR-S-dermatodea_contig10565:6188..6251Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10565 6189..6251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924163.3678684-CDS-S-dermatodea_contig10565:4338..44761622924163.3678684-CDS-S-dermatodea_contig10565:4338..4476Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10565 4339..4476 -
1694079061.0354111-CDS-S-dermatodea_contig10565:4338..44761694079061.0354111-CDS-S-dermatodea_contig10565:4338..4476Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10565 4339..4476 -
1622924163.378435-CDS-S-dermatodea_contig10565:4958..61881622924163.378435-CDS-S-dermatodea_contig10565:4958..6188Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10565 4959..6188 -
1694079061.0451438-CDS-S-dermatodea_contig10565:4958..61881694079061.0451438-CDS-S-dermatodea_contig10565:4958..6188Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10565 4959..6188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10565.394.1

>prot_S-dermatodea_contig10565.394.1 ID=prot_S-dermatodea_contig10565.394.1|Name=mRNA_S-dermatodea_contig10565.394.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=456bp
MGRRLEGSAGGTSSSTSADDSTTDDATIDPDGSTDVDDSFQDVATEPPAG
MSLSSNSSSSTDAASSSGSLVGEGSGGLDGGSSNSTGIDSSNSTTLDSST
TGGSVVDGSSSSSNSTTDVVSSSSNSSSSSSATDVVSSSNNSSSSSSSSS
ATDVLSSNNNSSSSSSVTDSSSTNSSSSSLEEVFDGTQPPEGGSSSSNST
AVDSSSGTTVDNSNSTAVVDSSTADGSEVDSSSSNSTASSSLDRVPEASQ
APESVNSTYAPTSSSNTSAADRNEENTPTLTPTTSSTHPPGSTEVTSSAS
EAPVEQPSTASSPTSTESGYTDDREAGGWEESTSYGDDGIEEAYEEYMEE
EYGYGDDQVGHETEEAEEGRHQYGYEDGEGGGEQQGQYGDFDEGEDEEDP
SVDDNGFVLKVAGGMTALVGLIAVGVWTVNRRRTSRLRGEFQGVRHRGLE
EADNL*
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mRNA from alignment at S-dermatodea_contig10565:3364..6251-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10565.394.1 ID=mRNA_S-dermatodea_contig10565.394.1|Name=mRNA_S-dermatodea_contig10565.394.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2888bp|location=Sequence derived from alignment at S-dermatodea_contig10565:3364..6251- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCTTTGTAGGCTTCCGGCCGGAGGGAGTTGGTGAGGTGGAACCCTGGCG
GGCAGTTACAGCTATGGGGAGAAGGCTGGAGGGTTCTGCAGGTGGTACCA
GCTCTTCCACTAGTGCCGATGATAGTACCACGGATGACGCTACCATTGAC
CCCGATGGGTCTACTGACGTTGATGACTCCTTCCAGGATGTGGCCACAGA
GCCGCCTGCCGGTATGTCGCTGTCATCCAACAGCAGCTCCTCGACGGATG
CGGCCAGCAGCAGCGGTAGCCTCGTTGGGGAGGGCTCCGGGGGGCTCGAC
GGGGGCAGCAGCAACAGCACTGGGATAGACAGCAGCAACAGCACCACTTT
AGACAGCAGCACGACGGGCGGATCGGTGGTTGACGGCAGCAGCAGCAGCA
GCAACTCGACGACTGACGTCGTCAGCAGTAGTAGCAACAGCAGCAGCAGC
AGCTCGGCGACTGATGTCGTCAGCAGTAGTAACAACAGCAGCAGCAGCAG
CAGCAGCAGCTCAGCGACTGACGTCCTCAGCAGTAATAACAACAGCAGCA
GCAGCAGCTCGGTGACTGACAGCAGTAGTACCAACAGCAGCAGCAGCAGC
CTGGAAGAAGTCTTCGACGGAACTCAGCCGCCCGAGGGCGGCAGCAGCAG
CAGCAACAGCACCGCTGTAGACAGCAGCAGCGGTACTACCGTAGACAACA
GTAACAGCACAGCCGTAGTAGACAGCAGCACGGCGGACGGATCGGAGGTC
GACAGCAGCAGCAGCAACAGCACTGCTAGCAGCAGCCTTGACCGCGTTCC
CGAAGCGTCTCAGGCACCGGAGTCGGTGAACAGCACCTATGCGCCAACCA
GCAGCAGCAACACCAGCGCAGCCGACAGGAATGAAGAGAACACCCCCACT
CTCACCCCTACCACCAGCTCTACTCACCCCCCCGGCAGCACGGAGGTAAC
CAGCAGCGCATCCGAAGCGCCGGTCGAGCAGCCTTCTACCGCAAGCAGCC
CGACCTCTACCGAATCGGGGTACACGGACGATAGAGAGGCAGGGGGGTGG
GAGGAAAGCACGTCCTACGGCGACGACGGCATAGAAGAGGCTTATGAGGA
ATACATGGAGGAGGAGTACGGGTACGGGGATGATCAAGTCGGACACGAGA
CAGAGGAGGCCGAGGAAGGGCGGCACCAGTACGGATACGAGGATGGCGAG
GGAGGGGGGGAGCAACAGGGCCAATACGGCGACTTCGATGAAGGGGAAGA
CGAGGAAGACCCGTCGGTGGACGACAACGGGTTTGTTCTTAAGGTGAGAA
GGAATGCGGGCGGACGGACGGACGGACGGACGGACGGACGGACGGACGGA
CGGGCGGGCGGGCGGCGTTGTGTATTTTCCCCGTTCTCAGTTGTTGTTTT
TTTATTGAACTTTTCGTTTTGCTCTGTTTCCCCGATTTCCCGATCGGATG
TGATCGGATGTGTTTGTTTCTTGGTCTCCACCCGGGAAGAATAAGGGGCG
CCCGCAAAATGGTTTGGGGGCCCGCCCGTCAGGTGCAGTTGAGTTTTGTT
TGCGGAAACGTGCTCATTTTGTTTTTAGTCGTGCGCAGGTGAACCATGTG
TGCGCGGCTTCTTTGTACTCCGAGTGCTGCGCAGCATGCGCACTTGCTAG
CACACATCGTCCACACACTGCAGGCAGGAAATGCTATATACTTATGTATA
ACTTAAGTATAGTAGGGTGATGGTCCCATGCGAAAATTGAATCTTCGCGT
TTAACTCCTCTTAAAATACGTGCAGGTGGCTGGGGGCATGACGGCCTTGG
TCGGTTTGATAGCGGTCGGTGTTTGGACGGTCAATCGACGGCGTACGTCG
CGCCTGCGCGGCGAGTTCCAAGGGGTGCGACACCGCGGCCTGGAAGAAGC
CGACAACCTCTGATGACCGCGCTCACAAGCACGGAAATATTTGTTTCTCC
TGATAATTTGTGGTGTCATGTTGTGTTTTCAGTAAAGGAGAGAGCTGATC
GGGGCTCGGCTTTGTTGCTGTGCGGCAAGAGCTACAGTAGCTAGCTATTA
TACTGTAGTACGGACATCGGTGTTACATAGTTGCCGCTTGCCGAACCCCC
GTGCTGTTTTTTGCTCTTCTGGAAATTGGGAAAGCAACGATAGGTCGGTT
TTTCTTTCTTTTTCATTTGATTTAGTTTGGGTGGAGAACGCGACGTGTTG
ATGTGGATTTCTCTCTGCCTTGCCTGCCCGGCGGTGTGTGATTTTCGTTT
TTTGGATTTCCACCCGCGCTTAGCATCTTTTTCTTGAAAATCTAACGTCC
GTCCAGTAGTGCGTCTACGTACGAGTAACGCTCTGCTGATGGTTCGTTTT
TCGCTGGCGCATTTGGAGAAATTATCAGTTTGAAAGATCCCGTCCAGGGG
ATGGGGGGCACTCGCTTGCTTGCTGCTGAGCGAGTTCGTTCGTTCGCAGT
GCCTGCCCGAGCGCGGCGATGCTAGTGCCTGGGCGGTAGCTAAGGATTTC
GTCTTCGTGTTGTGTGTGTATAACCGAATGCGAGAAAGGCGAAGGAAGCG
CGTAAGGTCGTGGTGGTTTGTGATTTTAGTATGTACCCGGAAGTATTCAT
CGTTACGCAATAAACATATAAGCGAGCATTCGCATGGTAGATGATGCGCA
TCGCTTGGGTAGGGTTCCGCCAAATGGGAGATGGCAATTGGAGGCACCCG
CAGCCAGCGCGTCGGCAAGCATTTATCGTTTGCAAGTACGTCCGCATTCC
GACGTGCGATGTGCTGATTTTCTGAGCATATCAAGGCTCTTCAGAACGGT
AGGTCTATCGAGCTCCAACAGTCAGTGTACACTGCTCTGCTTCAGCGTAG
AGTAGCTTGCTCAAAGGTGTCATCCAGGAATAGGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10565:3364..6251-

>mRNA_S-dermatodea_contig10565.394.1 ID=mRNA_S-dermatodea_contig10565.394.1|Name=mRNA_S-dermatodea_contig10565.394.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2736bp|location=Sequence derived from alignment at S-dermatodea_contig10565:3364..6251- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGAGAAGGCTGGAGGGTTCTGCAGGTGGTACCAGCTCTTCCACTAG
TGCCGATGATAGTACCACGGATGACGCTACCATTGACCCCGATGGGTCTA
CTGACGTTGATGACTCCTTCCAGGATGTGGCCACAGAGCCGCCTGCCGGT
ATGTCGCTGTCATCCAACAGCAGCTCCTCGACGGATGCGGCCAGCAGCAG
CGGTAGCCTCGTTGGGGAGGGCTCCGGGGGGCTCGACGGGGGCAGCAGCA
ACAGCACTGGGATAGACAGCAGCAACAGCACCACTTTAGACAGCAGCACG
ACGGGCGGATCGGTGGTTGACGGCAGCAGCAGCAGCAGCAACTCGACGAC
TGACGTCGTCAGCAGTAGTAGCAACAGCAGCAGCAGCAGCTCGGCGACTG
ATGTCGTCAGCAGTAGTAACAACAGCAGCAGCAGCAGCAGCAGCAGCTCA
GCGACTGACGTCCTCAGCAGTAATAACAACAGCAGCAGCAGCAGCTCGGT
GACTGACAGCAGTAGTACCAACAGCAGCAGCAGCAGCCTGGAAGAAGTCT
TCGACGGAACTCAGCCGCCCGAGGGCGGCAGCAGCAGCAGCAACAGCACC
GCTGTAGACAGCAGCAGCGGTACTACCGTAGACAACAGTAACAGCACAGC
CGTAGTAGACAGCAGCACGGCGGACGGATCGGAGGTCGACAGCAGCAGCA
GCAACAGCACTGCTAGCAGCAGCCTTGACCGCGTTCCCGAAGCGTCTCAG
GCACCGGAGTCGGTGAACAGCACCTATGCGCCAACCAGCAGCAGCAACAC
CAGCGCAGCCGACAGGAATGAAGAGAACACCCCCACTCTCACCCCTACCA
CCAGCTCTACTCACCCCCCCGGCAGCACGGAGGTAACCAGCAGCGCATCC
GAAGCGCCGGTCGAGCAGCCTTCTACCGCAAGCAGCCCGACCTCTACCGA
ATCGGGGTACACGGACGATAGAGAGGCAGGGGGGTGGGAGGAAAGCACGT
CCTACGGCGACGACGGCATAGAAGAGGCTTATGAGGAATACATGGAGGAG
GAGTACGGGTACGGGGATGATCAAGTCGGACACGAGACAGAGGAGGCCGA
GGAAGGGCGGCACCAGTACGGATACGAGGATGGCGAGGGAGGGGGGGAGC
AACAGGGCCAATACGGCGACTTCGATGAAGGGGAAGACGAGGAAGACCCG
TCGGTGGACGACAACGGGTTTGTTCTTAAGATGGGGAGAAGGCTGGAGGG
TTCTGCAGGTGGTACCAGCTCTTCCACTAGTGCCGATGATAGTACCACGG
ATGACGCTACCATTGACCCCGATGGGTCTACTGACGTTGATGACTCCTTC
CAGGATGTGGCCACAGAGCCGCCTGCCGGTATGTCGCTGTCATCCAACAG
CAGCTCCTCGACGGATGCGGCCAGCAGCAGCGGTAGCCTCGTTGGGGAGG
GCTCCGGGGGGCTCGACGGGGGCAGCAGCAACAGCACTGGGATAGACAGC
AGCAACAGCACCACTTTAGACAGCAGCACGACGGGCGGATCGGTGGTTGA
CGGCAGCAGCAGCAGCAGCAACTCGACGACTGACGTCGTCAGCAGTAGTA
GCAACAGCAGCAGCAGCAGCTCGGCGACTGATGTCGTCAGCAGTAGTAAC
AACAGCAGCAGCAGCAGCAGCAGCAGCTCAGCGACTGACGTCCTCAGCAG
TAATAACAACAGCAGCAGCAGCAGCTCGGTGACTGACAGCAGTAGTACCA
ACAGCAGCAGCAGCAGCCTGGAAGAAGTCTTCGACGGAACTCAGCCGCCC
GAGGGCGGCAGCAGCAGCAGCAACAGCACCGCTGTAGACAGCAGCAGCGG
TACTACCGTAGACAACAGTAACAGCACAGCCGTAGTAGACAGCAGCACGG
CGGACGGATCGGAGGTCGACAGCAGCAGCAGCAACAGCACTGCTAGCAGC
AGCCTTGACCGCGTTCCCGAAGCGTCTCAGGCACCGGAGTCGGTGAACAG
CACCTATGCGCCAACCAGCAGCAGCAACACCAGCGCAGCCGACAGGAATG
AAGAGAACACCCCCACTCTCACCCCTACCACCAGCTCTACTCACCCCCCC
GGCAGCACGGAGGTAACCAGCAGCGCATCCGAAGCGCCGGTCGAGCAGCC
TTCTACCGCAAGCAGCCCGACCTCTACCGAATCGGGGTACACGGACGATA
GAGAGGCAGGGGGGTGGGAGGAAAGCACGTCCTACGGCGACGACGGCATA
GAAGAGGCTTATGAGGAATACATGGAGGAGGAGTACGGGTACGGGGATGA
TCAAGTCGGACACGAGACAGAGGAGGCCGAGGAAGGGCGGCACCAGTACG
GATACGAGGATGGCGAGGGAGGGGGGGAGCAACAGGGCCAATACGGCGAC
TTCGATGAAGGGGAAGACGAGGAAGACCCGTCGGTGGACGACAACGGGTT
TGTTCTTAAGGTGGCTGGGGGCATGACGGCCTTGGTCGGTTTGATAGCGG
TCGGTGTTTGGACGGTCAATCGACGGCGTACGTCGCGCCTGCGCGGCGAG
TTCCAAGGGGTGCGACACCGCGGCCTGGAAGAAGCCGACAACCTCTGAGT
GGCTGGGGGCATGACGGCCTTGGTCGGTTTGATAGCGGTCGGTGTTTGGA
CGGTCAATCGACGGCGTACGTCGCGCCTGCGCGGCGAGTTCCAAGGGGTG
CGACACCGCGGCCTGGAAGAAGCCGACAACCTCTGA
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