prot_S-dermatodea_contig10559.390.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10559.390.1
Unique Nameprot_S-dermatodea_contig10559.390.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length128
Homology
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 5.690e-22
Identity = 65/141 (46.10%), Postives = 76/141 (53.90%), Query Frame = 0
Query:    2 DRAFAVDPMFHKMSKIFDEAGSKGMLLNNLNVSNGCKVSFDSE---VVTEPPSPEA---------VYTRPEEV--GEVAADNDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVDVSGLRSKLFDLCGDLSVRANFP 128
            DRAF +DPMFHKMSKIFDEAGSKGMLLNNL+VS+GCKVSFDSE     T PPSPE          V+ +PE+V  GE + D +                                 + ++  LRS LF LCGDLS  A  P
Sbjct:  121 DRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDSESSAAATAPPSPEGAEDQPRREKVFRKPEDVEDGEESKDGETPTGEEAGEQHPAAAEAAGG-------------MTNIKDLRSTLFSLCGDLSTLALCP 248          
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Match: A0A6H5K318_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K318_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 8.340e-22
Identity = 65/141 (46.10%), Postives = 75/141 (53.19%), Query Frame = 0
Query:    2 DRAFAVDPMFHKMSKIFDEAGSKGMLLNNLNVSNGCKVSFDSE---VVTEPPSPEA---------VYTRPEEV--GEVAADNDNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVDVSGLRSKLFDLCGDLSVRANFP 128
            DRAF +DPMFHKMSKIFDEAGSKGMLLNNL+VS+GCKVSFDSE     T PPSPE          V+ +PE V  GE + D +                                 + ++  LRS LF LCGDLS  A  P
Sbjct:  145 DRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDSESSAAATAPPSPEGAVDRSRRDKVFRKPEGVDDGEDSKDGETPAEEEAGKQHPAAAEAAEG-------------MTNIKDLRSTLFSLCGDLSTLALCP 272          
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Match: A0A7S4AC65_9STRA (Condensin complex subunit 2 n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AC65_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.660e-9
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 0
Query:    1 MDRAFAVDPMFHKMSKIFDEAGSKGMLLNNLNV-SNGCKVSFDSEVVTE 48
            +D AF +DP+FHKMSK FDE G+KG+LL NL V S+GC + FDS + TE
Sbjct:  317 LDAAFDIDPLFHKMSKTFDEGGAKGLLLANLGVGSSGCNIVFDSTLDTE 365          
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Match: K0R4E2_THAOC (Condensin complex subunit 2 (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4E2_THAOC)

HSP 1 Score: 62.4 bits (150), Expect = 9.060e-9
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:    1 MDRAFAVDPMFHKMSKIFDEAGSKGMLLNNLNVS-NGCKVSFDSEVVT 47
            +D A+ +DP+FHKMSK FDE G+KG+LL NL VS +GC V FDS+  T
Sbjct:  137 LDSAYDIDPLFHKMSKSFDEGGAKGLLLGNLGVSTSGCHVVFDSKEAT 184          
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Match: A0A6T5SRU4_9STRA (Condensin complex subunit 2 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T5SRU4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.210e-8
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0
Query:    1 MDRAFAVDPMFHKMSKIFDEAGSKGMLLNNLNVS-NGCKVSFDSE 44
            +D A+ +DP+FHKMSK FDE G+KG+LL NL V+ NGC + FDS+
Sbjct:    4 LDSAYDIDPLFHKMSKAFDEGGAKGLLLGNLGVAQNGCHIVFDSK 48          
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Match: A0A7S2PHP5_9STRA (Condensin complex subunit 2 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PHP5_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.240e-8
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 0
Query:    1 MDRAFAVDPMFHKMSKIFDEAGSKGMLLNNLNVS-NGCKVSFDSE 44
            +D A+ +DP+FHKMSK FDE G+KG+LL NL V+ NGC + FDS+
Sbjct:  199 LDSAYDIDPLFHKMSKAFDEGGAKGLLLGNLGVAQNGCHIVFDSK 243          
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Match: B7G0X0_PHATC (Condensin complex subunit 2 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G0X0_PHATC)

HSP 1 Score: 62.0 bits (149), Expect = 1.250e-8
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    1 MDRAFAVDPMFHKMSKIFDEAGSKGMLLNNLNVSN-GCKVSFDS 43
            +D AF +DP+FHKMSK FDE G+KG+LL NL VS+ GC V FDS
Sbjct:  345 LDAAFDIDPLFHKMSKTFDEGGAKGLLLANLGVSSHGCNVVFDS 388          
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Match: A0A7S2X224_9CHLO (Condensin complex subunit 2 n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2X224_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 2.260e-8
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 0
Query:    2 DRAFAVDPMFHKMSKIFDEAGSKGMLLNNLNVSNGCKVSFDS 43
            D +FAVDP+FH+ S  FDE G+KG+LLN+LNV+ GC++ FDS
Sbjct:  228 DLSFAVDPLFHQTSMKFDEGGAKGLLLNHLNVTQGCELVFDS 269          
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Match: A0A1E7FZ27_9STRA (Condensin complex subunit 2 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FZ27_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.340e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    1 MDRAFAVDPMFHKMSKIFDEAGSKGMLLNNLNVS-NGCKVSFDS 43
            +D AF +DP+FHKMSK FDE G+KG+LL NL+V   GCK+ FDS
Sbjct:  321 LDAAFDIDPLFHKMSKNFDEGGAKGLLLANLSVGYGGCKIIFDS 364          
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Match: A0A196SHL2_BLAHN (Condensin complex subunit 2 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SHL2_BLAHN)

HSP 1 Score: 60.8 bits (146), Expect = 3.050e-8
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 0
Query:    5 FAVDPMFHKMSKIFDEAGSKGMLLNNLNVSNGCKVSFDSEVVTEPPSPEAVYTRPEEVGEVAAD 68
            F  DP+FH MS+ FDE G+KG+LL+NL +++GC + FDS  V E   PE V T P +  E   D
Sbjct:  145 FDADPLFHLMSRRFDEGGAKGLLLSNLGLTDGCNIVFDSNEVVE--IPETVETPPADSSESFVD 206          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10559.390.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LD70_ECTSI5.690e-2246.10Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A6H5K318_9PHAE8.340e-2246.10Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
A0A7S4AC65_9STRA2.660e-961.22Condensin complex subunit 2 n=1 Tax=Pseudo-nitzsch... [more]
K0R4E2_THAOC9.060e-960.42Condensin complex subunit 2 (Fragment) n=1 Tax=Tha... [more]
A0A6T5SRU4_9STRA1.210e-860.00Condensin complex subunit 2 n=1 Tax=Skeletonema ma... [more]
A0A7S2PHP5_9STRA1.240e-860.00Condensin complex subunit 2 n=1 Tax=Skeletonema ma... [more]
B7G0X0_PHATC1.250e-865.91Condensin complex subunit 2 n=1 Tax=Phaeodactylum ... [more]
A0A7S2X224_9CHLO2.260e-861.90Condensin complex subunit 2 n=1 Tax=Chloropicon ro... [more]
A0A1E7FZ27_9STRA2.340e-863.64Condensin complex subunit 2 n=1 Tax=Fragilariopsis... [more]
A0A196SHL2_BLAHN3.050e-848.44Condensin complex subunit 2 n=1 Tax=Blastocystis s... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022816Condensin complex subunit 2/barrenPFAMPF05786Cnd2coord: 1..79
e-value: 6.8E-14
score: 51.5
IPR022816Condensin complex subunit 2/barrenPANTHERPTHR13108FAMILY NOT NAMEDcoord: 2..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10559contigS-dermatodea_contig10559:4522..7819 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10559.390.1mRNA_S-dermatodea_contig10559.390.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10559 4507..7819 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10559.390.1 ID=prot_S-dermatodea_contig10559.390.1|Name=mRNA_S-dermatodea_contig10559.390.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=128bp
MDRAFAVDPMFHKMSKIFDEAGSKGMLLNNLNVSNGCKVSFDSEVVTEPP
SPEAVYTRPEEVGEVAADNDNHQEEEEGGGGKPGGDGIAAADAAASAAAA
RRRVVDVSGLRSKLFDLCGDLSVRANFP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022816Condensin_barren_su2