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Homology
BLAST of mRNA_S-dermatodea_contig1055.386.1 vs. uniprot
Match: D8LE89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE89_ECTSI) HSP 1 Score: 171 bits (432), Expect = 5.230e-43 Identity = 189/413 (45.76%), Postives = 225/413 (54.48%), Query Frame = 2
Query: 86 MKLDWLDKIMNAGVVRQTYPPPH---------AGIPLQASSTASASNXXXXXXXXEAATVHQASRVPR-----HASSTWLQGPLRDCARGGNDDGALARSLLDAGAATDQTDTAGRRPLHWAAMRGNASVCLAXXXXXXXXXXXXXXXXXXXXCAKDAAIVEILIDRIE------------RAPHQASAPAGXXXXXXXXXGAA----DGV-STVNAMNAYGSTALHRAAFHGREGCLIALLKGGAGVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDESAKAFDDSTPWSELATAESTHRPGHSGVARVSALLNMARARSAWGRRGWLLMLQAARRR-VSEGKADGEKSSDMSVEIQEAGVGRALGSSFFGAAIPEEFVSGNDNSDLTASVHRLLALGEGGCFRLVVSFL 1228
M + W + +++ G V+Q + P H AG P+++ A+N +A + AS TWLQ PLRDCAR +DDGALARSLLDAGA T+ D+ GR PLHWA RGN +V LAXXXXXXXXXXXXXXXXXXXX E P APA A +GV S V+A N YGSTALHRAAF+GREG ++ALL+GGA V V XXXXXXXXXXXXXXXXXXXXXXX ESA A D STPWS+LA A T G VA+ + LLN AR AW RRGWLLML+ R V E +A +++ G GA E G D + L V++L+ +GE GCFRLVV FL
Sbjct: 9 MNMAWFNDMISKGFVKQRHLPQHTGGPPAAGHAGSPIESILNPDAANENRSPDSDQAXXXXXXXXXXQVQETGAASRTWLQSPLRDCARNADDDGALARSLLDAGAPTNFFDSTGRSPLHWACTRGNTAVVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFYGFAPIGLPPGNVPASLVAPALEAEELSWPMAAPMPQQNGVESIVDARNVYGSTALHRAAFNGREGVVLALLRGGADVCVVGNSGRXXXXXXXXXXXXXXXXXXXXXXXXESAIAKDGSTPWSQLALAAETRPRGCPRVAKTALLLNTARGARAWARRGWLLMLRDKHNRGVFEAEA---------IDLDGRG----------GACSDMEDGQGEDFARL---VNQLVGIGEEGCFRLVVGFL 399
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 180.3 |
| Seed ortholog evalue | 1.9e-42 |
| Seed eggNOG ortholog | 2880.D8LE89 |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Ankyrin repeat |
| Ec32 ortholog | Ec-00_001340.1 |
| Exons | 6 |
| Model size | 2292 |
| Cds size | 1215 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1055.386.1 >prot_S-dermatodea_contig1055.386.1 ID=prot_S-dermatodea_contig1055.386.1|Name=mRNA_S-dermatodea_contig1055.386.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=405bp
MVVSVALQGSNKEDQVRSVMNVQMKLDWLDKIMNAGVVRQTYPPPHAGIP
LQASSTASASNSGAAPSTGEAATVHQASRVPRHASSTWLQGPLRDCARGG
NDDGALARSLLDAGAATDQTDTAGRRPLHWAAMRGNASVCLALLDAGADG
GAPDRTGKTPLHCAKDAAIVEILIDRIERAPHQASAPAGAGQGQGASAGA
ADGVSTVNAMNAYGSTALHRAAFHGREGCLIALLKGGAGVSVVGKSGRTA
LHLACRNAHPGCVKILLAWGADESAKAFDDSTPWSELATAESTHRPGHSG
VARVSALLNMARARSAWGRRGWLLMLQAARRRVSEGKADGEKSSDMSVEI
QEAGVGRALGSSFFGAAIPEEFVSGNDNSDLTASVHRLLALGEGGCFRLV
VSFL* back to topmRNA from alignment at S-dermatodea_contig1055:17102..21955- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig1055.386.1 ID=mRNA_S-dermatodea_contig1055.386.1|Name=mRNA_S-dermatodea_contig1055.386.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4854bp|location=Sequence derived from alignment at S-dermatodea_contig1055:17102..21955- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTCTTCGGAGGAAAATGGTCGTGTCCGTCGCACTGCAGGGAAGTGAGT
CGCGAGAGACCTTCGGATAGAGGGGTAGGGGTGTCCCCGGCACAGATGTT
CCGCTTGTTGTGTTCAGAGAAGGTCTGTAGGCCAAGATACCTTATTATAT
TACTGCTGTAGAAGGATCGATTTGGACGCTGTGAGGTGGCTGATCCTGAG
AGTGTGGGGCATTGGCAGCATGTTTGCGGATGGCTTGGCTGTCGTCCGGC
ATGGAATCCTCTCAAGGTACCGGTTGCGTTCACGGGGAACACGTCCTGTT
ACAGGACTCTCTGTTGGATTTGTTCGCGTGCGGAGAGAGCGGCTCGGGCG
CCTCTTTCAGTCAGATTTTGCTTGTACAGTAGTATAATACAGACAGTAGT
ATAATAGTTGGAAGTAGTATATTATTGTCCACAAGTAATATTTTCTCGAA
TCGAAGATGAAGATCAAACCTCGCTCTTTCTCATCATGTTGATTTTATTT
CACGACCATCTCGCTTGTCCCGGTTCAACCTGCCGCACGCCGAACTGTCC
GTGCTCCTGGGACTAGAAGGTAACAAAGAGGACCAGGTGCGCAGCGTCAT
GAACGTCCAGATGAAGCTAGACTGGCTGGACAAGATTATGAACGCCGGCG
TCGTTAGGTGAGGCCCGATTCCACGGAAGTTCGTTGCGTCACTGCAACAG
GTTGTCTGCTACCCTCCTCCTGATAGGCCAACGGCCCACGGCCGCCCAAC
CGCCGCCTCTCGCAGCCACTGCGGTCCCGTGAAAACAAGTTGCAGGTTAC
TTTAGTCCGTCGGGGGTCGGAGCGGGCTAGCTGTAGACGCTCGGCGCGGG
GTTGGGTATCTTTGTTGGCGAGAATCGCGGGCAGTGTAAAAAAAAAAATC
TTTCTCGGCGCTTCCTTCCTGTATATTGCGTTCCCCGTTCTCGCCACGGG
GTTTGTGCTAAACATTGTTGGATATTCATTTTTCCATGGGCAGAGGCAAC
AAACAGTAGTTGTATAATATCATGGTGGATGGGGGTGCGCCCATGGAAGC
ACAGGACGCGCTCCTGTCTTGCTATGGTGCGGATTCTTCCCTCACTAGAC
CTTGCCTTTCGAACGCCAGAGTTGCGGTACCGGAACCGCAAGCACATGAT
GTTGCTCTCTATGGCGCGCGGGGACCCTGGCCGGTTTTGTTGTCAGACCT
CGATCAATTACAAGTATTAATAGCACAATACAAGTGTTCAAGTACTATAC
AGAGTAATAATGTACCACTTGTGGACGGAGGTTCGGTGGAGCAATGGCCA
CTACGACATCGATTCTTCGGAAAGGCTGAAGTGCTTGCGCGTCACCCTGG
TCCGCTAAACTTGTGTTGTGTCGTGTAGGGCGCGCGCGGAGCATAGAACT
AGCACCTGTGTGCTCAAACCATCGCCTTCCTCTTAAGACTACGTGAGCTT
TCAAGCAAACCGTTCGCCCACCTCCGAAGCGGTTCCATATGCCCGGAGCT
CTCCAAAACGGCCATTCCAAACTGTTCTGCCGGCGGGGGCAGCATGATGC
GGCACTGCCCGTGACATGTGCAAAACACCCCAAGGTGCCTCTGGGGCGGG
CGTCCTATATATTGTTCGCTGTGTGTAACTCTTCTACTGCTGTAACGTTG
TTCGATCGGCGACAACGACGAAACGGTGCTAAGATCGTCGCCGCCGCCCC
CCCCCCATCCCTCCCACGTGCCCCGCGTTGCTCAGGCAAACGTACCCGCC
TCCGCACGCGGGAATCCCTCTTCAAGCATCGAGCACTGCAAGCGCCTCCA
ATTCCGGGGCTGCTCCGAGCACGGGCGAGGCGGCCACCGTACATCAGGTG
AAATATCGAGTTTCAGCAATCACGTGATCTCTACGTTTCTTCGGCTTTGC
CCGCTCATACGAAAGGGCGTTCTAGTCCACCAATCAGGGACTCTGGAGCC
ACGGCCCGCCTGACAAGTTGCCCTTCTCCCGTTGAAATTGCGTACAGGCG
TCGCGCGTGCCCAGACATGCCTCGAGTACATGGCTGCAGGGCCCTCTGAG
GGACTGTGCTCGGGGCGGAAATGATGACGGTGCGCTCGCCCGGTCGTTGC
TGGACGCTGGTGCAGCTACGGATCAGACTGACACGGTGCGTCTCCAAATA
GTGCTATTGCCTTGCTTTTTCTGTTTCGGGAACGTGGTACTGGTGTGACA
CAGAGCGTTGGAATCAGGCCGGGGGAGGGCACGCGCTCGTGCAGCAGGAT
TGATTGTTCGGTACAGTGCGAACAGGAATCGGAAGGGCTCCCCATTTAGA
AGGCAGGACCACAAAATTGGGCCACGCGGAGATCCTGTGGGGTCACGTCG
GTTCCAAGCTTGTGCGATCGGGCAGTCCATCCACAATGTCCGCGATCGCG
ATGCTTTGTACAAAAGGAATCGCCCCCTCTGACGCAAACCGAGGGAAAAA
ATAAACGTCCCGGACCCTATCATACAGCACAGGACCAACTACGCGACCGT
TTCGTTGCCTTCTCCCGACGCCTTTGCTCATTGCGACCAGGCCGGGCGCC
GACCGCTCCACTGGGCAGCTATGCGCGGGAACGCGTCGGTTTGTCTGGCG
CTCCTCGACGCGGGCGCGGACGGCGGTGCTCCCGATCGCACTGGCAAGAC
GCCTCTCCACTGCGCGAAAGACGCCGCCATTGTAGAGATATTGATCGACC
GCATTGAAAGAGCGCCACATCAAGCATCCGCGCCCGCGGGAGCGGGTCAG
GGTCAAGGGGCTTCGGCAGGCGCGGCCGACGGTGTGTCAACCGTGAACGC
GATGAATGCGTACGGGTCTACGGCTCTTCACCGGGCGGCGTTCCACGGAC
GGGAGGGGTGTCTAATCGCGCTGCTCAAGGGCGGTGCTGGCGTGTCGGTG
GTGGGGAAGAGCGGCAGGTGGGCCGAGCGGGGCGATTGGGGTTAAACGGA
TGCGGAAAGTAGAGCGGGCTATAGGTTTGCGAGTTCACAACAGTCTGCCG
CACGGCGTGGTTAGGCTGACCTTTGTGGCACGCATATTTGGTGCATACGA
TCGATCGTCCACCGGAGGTAGCGCTGACTAAATGCGCGGTTGAAGTTGTG
TCTTTCGCCCCAGTACATACCGAAAGTACACTACTGTACTATAAATACCA
GTACTATTTGTAGCAGCATGATGATGATAAGGCGTGCCACAAACACCGCC
TCTTTTCGACGAATAATATAGCCGGTACCTGTTCGTAATTGTTCTTCCAC
GCCAGGAGCTCTGCACGACGACAGCGACTCCCACCACACGCCGCCCTATC
TTCGCCCCCCATACCCCGCAGGACCGCGCTGCATCTCGCATGTCGCAACG
CACACCCCGGCTGCGTCAAGATCCTCCTCGCCTGGGGTGCCGACGAATCC
GCCAAGGCGTTTGACGATTCCACCCCCTGGTCCGAGCTGGCAACCGCCGA
GAGCACCCACCGCCCAGGCCACTCAGGCGTCGCCAGGGTATCTGCTCTCC
TGAACATGGCGCGCGCGCGCAGCGCTTGGGGTAGGCGAGGGTGGCTGCTG
ATGCTTCAGGCAGCACGTCGCCGCGTGTCCGAAGGAAAGGCCGACGGCGA
GAAGAGTTCGGACATGAGCGTGGAAATTCAAGAGGCGGGCGTCGGCCGAG
CGCTGGGCTCGTCGTTTTTTGGAGCTGCGATTCCGGAAGAATTTGTCTCC
GGCAACGATAATTCTGATCTGACCGCGTCTGTGCACCGGCTGCTGGCCCT
TGGCGAGGGGGGCTGCTTCCGTCTCGTTGTCAGTTTCCTTTGAAGTAGTC
GCGGGCTGCTGGTTTTGAAGCGTACTTTTGTTTTTGCGTTTTACTTTTAG
TTTGTTTTAAATATTTTATCCAGTGTTAAGTAAGGTGCTGGCAAGACACG
CGAGCACTTTTGTATGTCCAGCGGTTTTTCTGTCGGGTTGTTAGATTTGT
ATTCACCTCAGAGCGTTCCCACAACGCAAATTAGTCAGCGGAGTCTGTAG
GGTTGTTGAGAAGATTGGTTTTGTTCTTCACTGTAGCGATGGGGTAGTTA
TTGTGGAGTTTTCGCGCCCCTAGGCGTTGGCGGGAATAGAGACCCGAGTT
GTATGCTCGGCATTTCAAGACCCTCTTCTCCTGCTATTGTGTACATGCAT
TTGCGCGTTTTTTGTTTTCGTCTCCGAGAGGAGAGGACTTTTTAGATACT
GGTTTGTACGCTGCAGCAGCAGTTTGCACATGCGTTCGGTAGAGCCCAAG
CCCCGTTGGCAAACCTTCACAAAAGCTTTGTGCTGGAGAACATCGCGTAC
GAGTAGGTCGGAGGCTGGAAAGCTTAGTACGCGCCCACTCCCCATGTTTT
TTTACTTCCGTCTTTTGGAGTTGCCGCTGTAAAGATTCCGGGGTATCTAG
TTGTTGGTTTGACAAGGCCTCGAACATGAACATGAATGGAAGGATTAATA
GTTAATATTACACGGTCGACGTCCACCGAAGGTTTGGCGACCCTTCAATG
TTACAGATAGATGTATCCAAGCTATTAATAGATGCCTGCGGTGCCTGGCT
TCGAAATTACACGCCCATCAAACCACTGGGGTTGAGATGCAAGTCGCCCC
GATAAGAAGGGCGAGAGAGATTTTCCCTCACGTGCACGTGGCCGACTTGC
TATGGCGTGGGGAAAAGCTTGACTTGTGTCTTGCTACAATCGGGTAACAT
GGGGAGAGATATTGTGTCAGGAGATGTGCGACTTTCAACTCGTCGTTGTG
AGGACAACCAGTCAACCTTAATACAGTCTCAAGTCTGAGAACGATTAAAA
TATATGAACAACAGAACTACGGCGAACGAAAGCATGACTATGGCGGGTAT
GTAC back to topCoding sequence (CDS) from alignment at S-dermatodea_contig1055:17102..21955- >mRNA_S-dermatodea_contig1055.386.1 ID=mRNA_S-dermatodea_contig1055.386.1|Name=mRNA_S-dermatodea_contig1055.386.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2430bp|location=Sequence derived from alignment at S-dermatodea_contig1055:17102..21955- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTCGTGTCCGTCGCACTGCAGGGAAATGGTCGTGTCCGTCGCACTGC
AGGGAAGTAACAAAGAGGACCAGGTGCGCAGCGTCATGAACGTCCAGATG
AAGCTAGACTGGCTGGACAAGATTATGAACGCCGGCGTCGTTAGGTAACA
AAGAGGACCAGGTGCGCAGCGTCATGAACGTCCAGATGAAGCTAGACTGG
CTGGACAAGATTATGAACGCCGGCGTCGTTAGGCAAACGTACCCGCCTCC
GCACGCGGGAATCCCTCTTCAAGCATCGAGCACTGCAAGCGCCTCCAATT
CCGGGGCTGCTCCGAGCACGGGCGAGGCGGCCACCGTACATCAGGCAAAC
GTACCCGCCTCCGCACGCGGGAATCCCTCTTCAAGCATCGAGCACTGCAA
GCGCCTCCAATTCCGGGGCTGCTCCGAGCACGGGCGAGGCGGCCACCGTA
CATCAGGCGTCGCGCGTGCCCAGACATGCCTCGAGTACATGGCTGCAGGG
CCCTCTGAGGGACTGTGCTCGGGGCGGAAATGATGACGGTGCGCTCGCCC
GGTCGTTGCTGGACGCTGGTGCAGCTACGGATCAGACTGACACGGCGTCG
CGCGTGCCCAGACATGCCTCGAGTACATGGCTGCAGGGCCCTCTGAGGGA
CTGTGCTCGGGGCGGAAATGATGACGGTGCGCTCGCCCGGTCGTTGCTGG
ACGCTGGTGCAGCTACGGATCAGACTGACACGGCCGGGCGCCGACCGCTC
CACTGGGCAGCTATGCGCGGGAACGCGTCGGTTTGTCTGGCGCTCCTCGA
CGCGGGCGCGGACGGCGGTGCTCCCGATCGCACTGGCAAGACGCCTCTCC
ACTGCGCGAAAGACGCCGCCATTGTAGAGATATTGATCGACCGCATTGAA
AGAGCGCCACATCAAGCATCCGCGCCCGCGGGAGCGGGTCAGGGTCAAGG
GGCTTCGGCAGGCGCGGCCGACGGTGTGTCAACCGTGAACGCGATGAATG
CGTACGGGTCTACGGCTCTTCACCGGGCGGCGTTCCACGGACGGGAGGGG
TGTCTAATCGCGCTGCTCAAGGGCGGTGCTGGCGTGTCGGTGGTGGGGAA
GAGCGGCAGGCCGGGCGCCGACCGCTCCACTGGGCAGCTATGCGCGGGAA
CGCGTCGGTTTGTCTGGCGCTCCTCGACGCGGGCGCGGACGGCGGTGCTC
CCGATCGCACTGGCAAGACGCCTCTCCACTGCGCGAAAGACGCCGCCATT
GTAGAGATATTGATCGACCGCATTGAAAGAGCGCCACATCAAGCATCCGC
GCCCGCGGGAGCGGGTCAGGGTCAAGGGGCTTCGGCAGGCGCGGCCGACG
GTGTGTCAACCGTGAACGCGATGAATGCGTACGGGTCTACGGCTCTTCAC
CGGGCGGCGTTCCACGGACGGGAGGGGTGTCTAATCGCGCTGCTCAAGGG
CGGTGCTGGCGTGTCGGTGGTGGGGAAGAGCGGCAGGACCGCGCTGCATC
TCGCATGTCGCAACGCACACCCCGGCTGCGTCAAGATCCTCCTCGCCTGG
GGTGCCGACGAATCCGCCAAGGCGTTTGACGATTCCACCCCCTGGTCCGA
GCTGGCAACCGCCGAGAGCACCCACCGCCCAGGCCACTCAGGCGTCGCCA
GGGTATCTGCTCTCCTGAACATGGCGCGCGCGCGCAGCGCTTGGGGTAGG
CGAGGGTGGCTGCTGATGCTTCAGGCAGCACGTCGCCGCGTGTCCGAAGG
AAAGGCCGACGGCGAGAAGAGTTCGGACATGAGCGTGGAAATTCAAGAGG
CGGGCGTCGGCCGAGCGCTGGGCTCGTCGTTTTTTGGAGCTGCGATTCCG
GAAGAATTTGTCTCCGGCAACGATAATTCTGATCTGACCGCGTCTGTGCA
CCGGCTGCTGGCCCTTGGCGAGGGGGGCTGCTTCCGTCTCGTTGTCAGTT
TCCTTTGAGACCGCGCTGCATCTCGCATGTCGCAACGCACACCCCGGCTG
CGTCAAGATCCTCCTCGCCTGGGGTGCCGACGAATCCGCCAAGGCGTTTG
ACGATTCCACCCCCTGGTCCGAGCTGGCAACCGCCGAGAGCACCCACCGC
CCAGGCCACTCAGGCGTCGCCAGGGTATCTGCTCTCCTGAACATGGCGCG
CGCGCGCAGCGCTTGGGGTAGGCGAGGGTGGCTGCTGATGCTTCAGGCAG
CACGTCGCCGCGTGTCCGAAGGAAAGGCCGACGGCGAGAAGAGTTCGGAC
ATGAGCGTGGAAATTCAAGAGGCGGGCGTCGGCCGAGCGCTGGGCTCGTC
GTTTTTTGGAGCTGCGATTCCGGAAGAATTTGTCTCCGGCAACGATAATT
CTGATCTGACCGCGTCTGTGCACCGGCTGCTGGCCCTTGGCGAGGGGGGC
TGCTTCCGTCTCGTTGTCAGTTTCCTTTGA back to top
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