mRNA_S-dermatodea_contig10543.380.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10543.380.1
Unique NamemRNA_S-dermatodea_contig10543.380.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10543.380.1 vs. uniprot
Match: D8LKE3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKE3_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 5.510e-24
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 MSTGVDPGDVLLCDLGNKALLVEDLENALRLWTRPVVLIAGRNSLDRLPRSVPRTILYLDLSWNR 195
            + T  +P DVLL DLG+++LL EDLE ALRLWTRP +LIAGRNSLDRLP +VP TILYLDLSWNR
Sbjct:  107 LPTAANPSDVLLVDLGSRSLLQEDLEKALRLWTRPSILIAGRNSLDRLPANVPGTILYLDLSWNR 171
[Close]
BLAST of mRNA_S-dermatodea_contig10543.380.1 vs. uniprot
Match: A0A6H5JHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT2_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.030e-23
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    1 MSTGVDPGDVLLCDLGNKALLVEDLENALRLWTRPVVLIAGRNSLDRLPRSVPRTILYLDLSWNR 195
            + T  +P DVLL DLG++ LL EDLE ALRLWTRP +LIAGRNSLDRLP +VP TILYLDLSWNR
Sbjct:  133 LPTAANPSDVLLVDLGSRLLLQEDLEKALRLWTRPSILIAGRNSLDRLPANVPGTILYLDLSWNR 197
[Close]
BLAST of mRNA_S-dermatodea_contig10543.380.1 vs. uniprot
Match: A0A5D6YF65_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YF65_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.600e-5
Identity = 21/63 (33.33%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    4 STGVDPGDVLLCDLGNKALLVEDLENALRLWTRPVVLIAGRNSLDRLPRSVPRTILYLDLSWN 192
            S G+D  +   CDL  + L    +E  LR++    V+    N ++R+P ++P +IL LD+S+N
Sbjct:   12 SLGLDGAESSFCDLSGRGLAAAQIERTLRVFETAEVIDLSNNEIERIPATIPHSILALDVSFN 74
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10543.380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKE3_ECTSI5.510e-2473.85Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JHT2_9PHAE1.030e-2373.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6YF65_9STRA2.600e-533.33Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10543contigS-dermatodea_contig10543:157..354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue8e-20
Seed eggNOG ortholog2880.D8LKE3
KEGG koko:K16606,ko:K19750
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-16_002670.1
Exons1
Model size198
Cds size198
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.454601-CDS-S-dermatodea_contig10543:156..3541622924162.454601-CDS-S-dermatodea_contig10543:156..354Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10543 157..354 -
1694079060.446401-CDS-S-dermatodea_contig10543:156..3541694079060.446401-CDS-S-dermatodea_contig10543:156..354Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10543 157..354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10543.380.1prot_S-dermatodea_contig10543.380.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10543 157..354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10543.380.1

>prot_S-dermatodea_contig10543.380.1 ID=prot_S-dermatodea_contig10543.380.1|Name=mRNA_S-dermatodea_contig10543.380.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
MSTGVDPGDVLLCDLGNKALLVEDLENALRLWTRPVVLIAGRNSLDRLPR
SVPRTILYLDLSWNR*
back to top

mRNA from alignment at S-dermatodea_contig10543:157..354-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10543.380.1 ID=mRNA_S-dermatodea_contig10543.380.1|Name=mRNA_S-dermatodea_contig10543.380.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=198bp|location=Sequence derived from alignment at S-dermatodea_contig10543:157..354- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCAACAGGCGTCGACCCTGGCGACGTGCTGCTGTGCGACCTGGGGAA
TAAAGCTTTGCTTGTGGAGGATCTCGAAAACGCGCTGCGCCTGTGGACGC
GACCGGTGGTATTGATAGCAGGGAGAAACTCGCTGGATCGGCTCCCTCGG
AGCGTTCCTCGGACGATTCTCTACCTAGATCTGTCGTGGAACAGGTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10543:157..354-

>mRNA_S-dermatodea_contig10543.380.1 ID=mRNA_S-dermatodea_contig10543.380.1|Name=mRNA_S-dermatodea_contig10543.380.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at S-dermatodea_contig10543:157..354- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCAACAGGCGTCGACCCTGGCGACGTGCTGCTGTGCGACCTGGGGAA
TAAAGCTTTGCTTGTGGAGGATCTCGAAAACGCGCTGCGCCTGTGGACGC
GACCGGTGGTATTGATAGCAGGGAGAAACTCGCTGGATCGGCTCCCTCGG
AGCGTTCCTCGGACGATTCTCTACCTAGATCTGTCGTGGAACAGGTGAAT
GTCAACAGGCGTCGACCCTGGCGACGTGCTGCTGTGCGACCTGGGGAATA
AAGCTTTGCTTGTGGAGGATCTCGAAAACGCGCTGCGCCTGTGGACGCGA
CCGGTGGTATTGATAGCAGGGAGAAACTCGCTGGATCGGCTCCCTCGGAG
CGTTCCTCGGACGATTCTCTACCTAGATCTGTCGTGGAACAGGTGA
back to top