mRNA_S-dermatodea_contig10541.377.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10541.377.1
Unique NamemRNA_S-dermatodea_contig10541.377.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10541.377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10541contigS-dermatodea_contig10541:4400..5248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size849
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10541.377.1prot_S-dermatodea_contig10541.377.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10541 4534..5190 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.1632135-UTR-S-dermatodea_contig10541:4399..45331622924162.1632135-UTR-S-dermatodea_contig10541:4399..4533Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10541 4400..4533 +
1694079060.2100282-UTR-S-dermatodea_contig10541:4399..45331694079060.2100282-UTR-S-dermatodea_contig10541:4399..4533Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10541 4400..4533 +
1622924162.1882632-UTR-S-dermatodea_contig10541:5190..52481622924162.1882632-UTR-S-dermatodea_contig10541:5190..5248Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10541 5191..5248 +
1694079060.235884-UTR-S-dermatodea_contig10541:5190..52481694079060.235884-UTR-S-dermatodea_contig10541:5190..5248Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10541 5191..5248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.1747193-CDS-S-dermatodea_contig10541:4533..51901622924162.1747193-CDS-S-dermatodea_contig10541:4533..5190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10541 4534..5190 +
1694079060.223526-CDS-S-dermatodea_contig10541:4533..51901694079060.223526-CDS-S-dermatodea_contig10541:4533..5190Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10541 4534..5190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10541.377.1

>prot_S-dermatodea_contig10541.377.1 ID=prot_S-dermatodea_contig10541.377.1|Name=mRNA_S-dermatodea_contig10541.377.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=219bp
MCPLLMRHSELCTCISSSITTQEYHLWGPTPRYDTRRKCMHTRMITVCRS
EIINALKFVKRVEGRSFPYHRPAHKHSGRTTPRHHSSLHLAAREATAVST
AQQPVTKRLQNYTCTSSKSDKQFSKEALLFAKGPTAWIHMRGPNSHAVYN
MPHETLLSPETLHIQSRRKDTSWKDTQALELSTHQMGQSGLAASSSRTSP
SSQGTDAIVTATSPTLST*
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mRNA from alignment at S-dermatodea_contig10541:4400..5248+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10541.377.1 ID=mRNA_S-dermatodea_contig10541.377.1|Name=mRNA_S-dermatodea_contig10541.377.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=849bp|location=Sequence derived from alignment at S-dermatodea_contig10541:4400..5248+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAATATTCGTCATTCATTCCTAATAATAAATATGTAGAAACAGAAGACA
ACCTACAGGTGCAGTATCATACTCCGTAGTAATTAGTGAACCGCTTCGTT
CGTGTTCTCGTCGCATGGTGTGCACAATCAATGAATGTGCCCATTGCTCA
TGAGGCATTCCGAATTGTGTACTTGTATATCATCATCAATCACCACGCAG
GAGTATCACCTTTGGGGACCAACACCGCGGTATGATACGCGCCGCAAATG
CATGCATACTCGTATGATCACGGTGTGTCGAAGCGAAATCATCAATGCAC
TAAAATTTGTGAAGCGCGTTGAAGGCCGGAGCTTTCCTTACCACCGCCCC
GCACATAAACACTCGGGACGCACTACACCGCGGCATCATTCATCGTTGCA
CTTGGCAGCCCGCGAGGCTACTGCCGTCTCAACTGCGCAACAACCTGTGA
CCAAACGCTTACAAAATTATACTTGTACAAGTAGCAAAAGCGACAAACAA
TTTTCAAAGGAGGCTCTTCTCTTCGCCAAGGGTCCAACCGCTTGGATACA
CATGCGAGGTCCAAACTCCCATGCCGTCTACAATATGCCACACGAAACAC
TATTAAGCCCCGAGACACTACATATTCAATCCCGGCGCAAAGATACCTCA
TGGAAGGACACGCAGGCACTTGAATTATCTACCCATCAAATGGGACAATC
TGGGTTGGCAGCCAGCTCCTCCAGGACAAGTCCCTCATCACAGGGTACCG
ACGCAATTGTCACGGCGACCTCTCCCACTCTCTCGACCTAGACGACGCGT
GCGCCCGGCCCCGCAGAAGATGCGGGCGCCACGCGCGGGAAAACCAGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10541:4400..5248+

>mRNA_S-dermatodea_contig10541.377.1 ID=mRNA_S-dermatodea_contig10541.377.1|Name=mRNA_S-dermatodea_contig10541.377.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at S-dermatodea_contig10541:4400..5248+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGCCCATTGCTCATGAGGCATTCCGAATTGTGTACTTGTATATCATC
ATCAATCACCACGCAGGAGTATCACCTTTGGGGACCAACACCGCGGTATG
ATACGCGCCGCAAATGCATGCATACTCGTATGATCACGGTGTGTCGAAGC
GAAATCATCAATGCACTAAAATTTGTGAAGCGCGTTGAAGGCCGGAGCTT
TCCTTACCACCGCCCCGCACATAAACACTCGGGACGCACTACACCGCGGC
ATCATTCATCGTTGCACTTGGCAGCCCGCGAGGCTACTGCCGTCTCAACT
GCGCAACAACCTGTGACCAAACGCTTACAAAATTATACTTGTACAAGTAG
CAAAAGCGACAAACAATTTTCAAAGGAGGCTCTTCTCTTCGCCAAGGGTC
CAACCGCTTGGATACACATGCGAGGTCCAAACTCCCATGCCGTCTACAAT
ATGCCACACGAAACACTATTAAGCCCCGAGACACTACATATTCAATCCCG
GCGCAAAGATACCTCATGGAAGGACACGCAGGCACTTGAATTATCTACCC
ATCAAATGGGACAATCTGGGTTGGCAGCCAGCTCCTCCAGGACAAGTCCC
TCATCACAGGGTACCGACGCAATTGTCACGGCGACCTCTCCCACTCTCTC
GACCTAGATGTGCCCATTGCTCATGAGGCATTCCGAATTGTGTACTTGTA
TATCATCATCAATCACCACGCAGGAGTATCACCTTTGGGGACCAACACCG
CGGTATGATACGCGCCGCAAATGCATGCATACTCGTATGATCACGGTGTG
TCGAAGCGAAATCATCAATGCACTAAAATTTGTGAAGCGCGTTGAAGGCC
GGAGCTTTCCTTACCACCGCCCCGCACATAAACACTCGGGACGCACTACA
CCGCGGCATCATTCATCGTTGCACTTGGCAGCCCGCGAGGCTACTGCCGT
CTCAACTGCGCAACAACCTGTGACCAAACGCTTACAAAATTATACTTGTA
CAAGTAGCAAAAGCGACAAACAATTTTCAAAGGAGGCTCTTCTCTTCGCC
AAGGGTCCAACCGCTTGGATACACATGCGAGGTCCAAACTCCCATGCCGT
CTACAATATGCCACACGAAACACTATTAAGCCCCGAGACACTACATATTC
AATCCCGGCGCAAAGATACCTCATGGAAGGACACGCAGGCACTTGAATTA
TCTACCCATCAAATGGGACAATCTGGGTTGGCAGCCAGCTCCTCCAGGAC
AAGTCCCTCATCACAGGGTACCGACGCAATTGTCACGGCGACCTCTCCCA
CTCTCTCGACCTAG
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