mRNA_S-dermatodea_contig10528.371.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10528.371.1
Unique NamemRNA_S-dermatodea_contig10528.371.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Match: D7G427_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G427_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 1.150e-71
Identity = 173/267 (64.79%), Postives = 185/267 (69.29%), Query Frame = 1 
Query:    1 GSFMRHKGAAVLTRALRRFGSGEGKDEAVTREACGALRSVTLGDDRRKDFSGTYDNVKALVSAGAVPLLLEVARGFEDDSATVSSVYLALKQLAANDESVKLIVENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLRLVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCETVLREAGKLRGCVDEAYGALRDLQCEV 801
            GSFMR KGA VL   LRR+G+GEG+D AVTREAC ALRSVTLGDDRRKDFSGTYDNVKALVSAG +PLLLE AR  E+DSAT+S V+LALKQLAANDES                                                          CM+QH++DKTLQEHGCATMAAM+LRSPPNGA+  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         GCE VLREAGKLRGCVDEAYGALRDLQCEV
Sbjct:  251 GSFMRRKGADVLVETLRRYGAGEGRDAAVTREACAALRSVTLGDDRRKDFSGTYDNVKALVSAGVIPLLLEAARDSEEDSATLSPVFLALKQLAANDESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCMAQHQNDKTLQEHGCATMAAMSLRSPPNGAQIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLRPTMLDEGCEAVLREAGKLRGCVDEAYGALRDLQCEV 517
[Close]
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Match: W7UC49_9STRA (Armadillo repeat containing 6 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UC49_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.190e-42
Identity = 130/266 (48.87%), Postives = 165/266 (62.03%), Query Frame = 1 
Query:    4 SFMRHKGAAVLTRALRRFGSGEGKDEAVTREACGALRSVTLGDDRRKDFSGTYDNVKALVSAGAVPLLLEVARGFEDDSATVSSVYLALKQLAANDESVKLIVENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLRLVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCETVLREAGKLRGCVDEAYGALRDLQCEV 801
            SF+ H G   L   L +       D  + REACGA+++VT  DD RKDFS ++ + +AL + G +P+LL+  R F  DS TV++   AL+ LA N+ESV  I   GG+    +A+ +      L RA   LFRNVS +D  KTRL   G  +L+L  M +H  ++ +QEHG AT+ AMALRSP N       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           G E +LR AG+ +  VDEAY ALRDL+C+V
Sbjct:  251 SFVEHGGLDTLVECLEK--EAWASDCEIVREACGAIKAVTAVDDFRKDFSASHTHTRALTAKGCIPVLLQACRRFGADSDTVATGLDALRNLANNEESVNQIASEGGVVGTVRALQAHLSHPALARAATGLFRNVSADDRHKTRLCKNGAAQLMLEAMREHAQERKIQEHGLATLGAMALRSPDNCRHLFGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPELGEAFLEAGAEPLLRLAGRYQESVDEAYAALRDLKCDV 514
[Close]
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Match: A0A2D4CGC3_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CGC3_PYTIN)

HSP 1 Score: 134 bits (336), Expect = 1.700e-32
Identity = 121/242 (50.00%), Postives = 164/242 (67.77%), Query Frame = 1 
Query:   76 DEAVTREACGALRSVTLGDDRRKDFSGTYDNVKALVSAGAVPLLLEVARGFEDDSATVSSVYLALKQLAANDESVKLIVENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLRLVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCETVLREAGKLRGCVDEAYGALRDLQCEV 801
            D+AV++    ALR +T+ DD R   S   D++K LVS  A+  +LE  +   +    +++  + LKQLA  +++ K I+E  GLEL+   +  +     + +  +++FRNV+ +D +K  ++S GG+  +L  M  H+ D ++Q+H CAT+AA+ALRSP N  RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     E VLR+A + RGC DEAY ALRDL C +
Sbjct:  217 DDAVSKHLAAALRVLTINDDPRATMSQAQDSIKLLVSRDAITFILETVKTRRETPELLAAWLIVLKQLAITEDNCKKILELQGLELLFDLMGQYERHLTVTKRCVTVFRNVAASDEIKQCIISSGGVARILEAMEIHRGDVSMQQHACATLAAIALRSPENSTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEEDVEDVLRQAQRYRGCGDEAYAALRDLGCSI 458
[Close]
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Match: A0A8K1FNC8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNC8_PYTOL)

HSP 1 Score: 130 bits (328), Expect = 2.470e-31
Identity = 118/243 (48.56%), Postives = 160/243 (65.84%), Query Frame = 1 
Query:   73 KDEAVTREACGALRSVTLGDDRRKDFSGTYDNVKALVSAGAVPLLLEVARGFEDDSATVSSVYLALKQLAANDESVKLIVENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLRLVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCETVLREAGKLRGCVDEAYGALRDLQCEV 801
            +DE ++++    LR +T+ DD +  FS   D +K L++   V  +++  +   D    +SS  + LKQLA  +++ K I E  GLEL+ + ++       + +  +++FRNV+  D LK  +++ GG   +L  M  H  D ++Q+H CAT+AA+ALRSP N  R   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   E +LREA K RGC DEAY ALRDL C++
Sbjct:  220 QDETLSKQLAATLRLLTINDDPKATFSQAQDTIKLLIAKDLVAYIIDTIKHNNDKPEVLSSWIIVLKQLAITEDNCKKIFELSGLELLFQTMLQHERNLTVVKRCVTVFRNVAAADELKEYIITSGGAAQILVAMQTHIADASMQQHACATLAAIALRSPENSTRLVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVEELLREAQKYRGCGDEAYAALRDLGCDI 462
[Close]
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Match: K3WSJ3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSJ3_GLOUD)

HSP 1 Score: 129 bits (324), Expect = 1.020e-30
Identity = 113/243 (46.50%), Postives = 154/243 (63.37%), Query Frame = 1 
Query:   73 KDEAVTREACGALRSVTLGDDRRKDFSGTYDNVKALVSAGAVPLLLEVARGFEDDSATVSSVYLALKQLAANDESVKLIVENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLRLVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCETVLREAGKLRGCVDEAYGALRDLQCEV 801
            +DE+++++    LR +T+ DD    FS   + +K LV+   +P +LE+ RG  D    +S   + LKQLA  +++ K I E  GLEL+ + ++      V+    +++ RNV+  D LK  ++  GG+  VL  M  H DD +LQ+H CAT+AA+ALR+P     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            E +LR+A + RGC DEAY ALRDL C++
Sbjct:  235 QDESLSKQLALVLRVLTVNDDPNATFSQAQETIKQLVAKDVIPYILEIVRGNHDKPEMLSVWLVVLKQLAITEDNCKKIYELEGLELLQQVMIQHEKHLVVMMRCITVLRNVAAADELKAYIIKSGGVERVLTGMRLHLDDPSLQQHACATLAAIALRAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVELRPRILDEDIEPLLRDAQRYRGCGDEAYAALRDLGCDI 477
[Close]
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Match: A0A662WFF7_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WFF7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.140e-27
Identity = 79/245 (32.24%), Postives = 113/245 (46.12%), Query Frame = 1 
Query:   73 KDEAVTREACGALRSVTLGDDRRKDFSGTYDNVKALVSAGAVPLLLEVARGFEDDSATVSSVYLALKQLAANDESVKLIVENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLRLVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GCETVLREAGKLRGCVDEAYGALRDLQCEV 801
            +DE ++ +   A R +T+ DD R  FS   D VK LV+   +P  LE       DS  ++S    LKQLA  +E+ + I + GGL  V + +    L   L +  ++++RNV+  D LK  +L  GG+   L  M +H+ D ++Q+H CAT+AA+ALRSP N                                                       E +LREA + RGC DEAY ALRDL CE+
Sbjct:  218 EDELLSIQLALAFRVLTINDDPRATFSQAQDTVKTLVAHDVIPYSLEALT--HRDSKLLASWLAVLKQLAITEENCQQIADLGGLATVQRVMQVNELNPSLVKRCITVYRNVAAADELKRAILQSGGVECTLLAMRRHEADASIQQHACATLAAIALRSPENSQALVKLGAAQQISRAMQAHRRDVAVLRQASLAVRNMVARSVELRSHFLQEEPDIEPLLREAQQYRGCGDEAYAALRDLGCEI 460
[Close]
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Match: A0A662Y6A7_9STRA (Choline-phosphate cytidylyltransferase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y6A7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.060e-27
Identity = 78/245 (31.84%), Postives = 113/245 (46.12%), Query Frame = 1 
Query:   73 KDEAVTREACGALRSVTLGDDRRKDFSGTYDNVKALVSAGAVPLLLEVARGFEDDSATVSSVYLALKQLAANDESVKLIVENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLRLVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GCETVLREAGKLRGCVDEAYGALRDLQCEV 801
            +DE ++ +   A R +T+ DD R  FS   D VK LV+   +P  LE       DS  ++S    LKQLA  +E+ + I + GGL  V + +    L   + +  ++++RNV+  D LK  +L  GG+   L  M +H+ D ++Q+H CAT+AA+ALRSP N                                                       E +LREA + RGC DEAY ALRDL CE+
Sbjct:  510 EDELLSIQLAFAFRVLTINDDPRATFSQAQDTVKTLVAHDVIPYSLEALT--HRDSKLLASWLAVLKQLAITEENCQQIADLGGLATVQRVMQMNELNPSIVKRCITVYRNVAAADELKRAILQSGGVECTLLSMRRHESDASIQQHACATLAAIALRSPENSHALVKLGAAQQISRAMQAHRRDVAVLRQASLAVRNMVARSVELRSHFLQEEPDIEPLLREAQQYRGCGDEAYAALRDLGCEI 752
[Close]
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Match: A0A5D6Y9J7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y9J7_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.050e-26
Identity = 103/245 (42.04%), Postives = 143/245 (58.37%), Query Frame = 1 
Query:   73 KDEAVTREACGALRSVTLGDDRRKDFSGTYDNVKALVSAGAVPLLLE-VARGFEDDSATVSSVYLA-LKQLAANDESVKLIVENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLRLVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCETVLREAGKLRGCVDEAYGALRDLQCEV 801
            + +A+++     LR +T+ DD R  FS  ++ +KALV+  A+  +L+ V R     +  + + +LA L+QLA  +E    I E  GL L+ + +     +  +    +++ RNV+  DALK +LL+ G +  VL  M QH  D  LQ+H CAT+AA+ALR+P +  R  XXXXXXXXXXXXXXXXXXXXXXXXXXX                   G E +LR A + RGC DEAY ALRDL C +
Sbjct:  232 QSDALSQHVARVLRVLTVNDDPRAAFSQAHETIKALVAKDALVYVLDTVQRAAAAGAPELLAAWLAVLRQLAVTEEHCTQIFELQGLALLQQVMAKHEGDRAVTTRCVTVLRNVAAADALKAQLLASGAVERVLAAMQQHAGDAALQQHACATLAAIALRAPDHSVRVVXXXXXXXXXXXXXXXXXXXXXXXXXXXALRNLGARSVALRPRILDEGVEPLLRAAVQRRGCGDEAYAALRDLGCAI 476
[Close]
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Match: A0A6A3U5I2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U5I2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.340e-25
Identity = 103/249 (41.37%), Postives = 141/249 (56.63%), Query Frame = 1 
Query:   76 DEAVTREACGALRSVTLGDDRRKDFSGTYDNVKALVSAGAVPLLLEVARGFEDDSATVSSVYLA-----LKQLAANDESVKLIVENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLRLVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--CETVLREAGKLRGCVDEAYGALRDLQCEV 801
            DE ++++     R +T+ DD R  FS   D +KALV   A+P   EV R      +T  +  L      LKQLA  +E+ + I +  GL  V + + ++   A + +  +++FRNV+  D LK  +L  GG+   L  M +H+ D ++Q++ CAT+AA+ALRSP N   XXXXXXXXXXXXXXXXXXXXXXXXXXX                         E +LREA + RGC DEAY ALRDL C++
Sbjct:  213 DEVLSKQLALCFRVLTINDDPRAMFSQAQDTIKALVERDAIPYSFEVLRRVGRGDSTAQADLLVNWLAVLKQLAVTEENCQEIADLDGLVTVQEVMQAYEHNAPVAKRCITVFRNVAAADDLKHAILKSGGVERTLLAMQRHEADASIQQNACATLAAIALRSPENSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAVRNMVARSVELRSRFLQDEPEIEPLLREAQQYRGCGDEAYAALRDLGCDI 461
[Close]
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Match: W2Q1J7_PHYPN (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2Q1J7_PHYPN)

HSP 1 Score: 112 bits (281), Expect = 9.060e-25
Identity = 103/261 (39.46%), Postives = 145/261 (55.56%), Query Frame = 1 
Query:   43 ALRRFGSGEGKDEAVTREACGALRSVTLGDDRRKDFSGTYDNVKALVSAGAVPLLLEVARGFEDDSATVSSVYL------ALKQLAANDESVKLIVENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLRLVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GCETVLREAGKLRGCVDEAYGALRDLQCEV 801
            A+ R+      +E ++++     R +T+ DD R  FS   D +KALV    +   L+V R      AT +S  L       LKQLA  +E+ + I +  GL +V   + ++   A + +  +++FRNV+  D LK  +L  GG+   L  M +H+ D ++Q++ CAT+AA+ALRSP N   XXXXXXXXXXXXXXXXXXXXXXXXXXX                         E +LR+A + RGC DEAY ALRDL C++
Sbjct:  203 AICRYLESAKANEVLSKQLALCFRVLTINDDPRATFSQAQDTIKALVERNVISYSLDVLRQVRCTDATQTSPDLLVNWLAVLKQLAVTEENCQQIADLDGLTIVQDVMQAYEHSAPVAKRCITVFRNVAAADDLKRAILQSGGVERTLLVMRRHEADASIQQNACATLAAIALRSPENSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLAVRNMVARSVELRSRFLHDEPAIEPLLRDAQQYRGCGDEAYAALRDLGCDI 463
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10528.371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G427_ECTSI1.150e-7164.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7UC49_9STRA6.190e-4248.87Armadillo repeat containing 6 n=2 Tax=Monodopsidac... [more]
A0A2D4CGC3_PYTIN1.700e-3250.00Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A8K1FNC8_PYTOL2.470e-3148.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WSJ3_GLOUD1.020e-3046.50Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662WFF7_9STRA2.140e-2732.24Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A662Y6A7_9STRA5.060e-2731.84Choline-phosphate cytidylyltransferase n=1 Tax=Not... [more]
A0A5D6Y9J7_9STRA2.050e-2642.04Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6A3U5I2_9STRA1.340e-2541.37Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
W2Q1J7_PHYPN9.060e-2539.46Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10528contigS-dermatodea_contig10528:1271..7773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score231.9
Seed ortholog evalue3.5e-58
Seed eggNOG ortholog2880.D7G427
EggNOG free text desc.hematopoietic progenitor cell differentiation
EggNOG OGsKOG4199@1,KOG4199@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Exons5
Model size801
Cds size792
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10528.371.1prot_S-dermatodea_contig10528.371.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10528 1280..7773 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924161.6412609-UTR-S-dermatodea_contig10528:1270..12791622924161.6412609-UTR-S-dermatodea_contig10528:1270..1279Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10528 1271..1279 +
1694079059.8418362-UTR-S-dermatodea_contig10528:1270..12791694079059.8418362-UTR-S-dermatodea_contig10528:1270..1279Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10528 1271..1279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924161.6519086-CDS-S-dermatodea_contig10528:1279..14241622924161.6519086-CDS-S-dermatodea_contig10528:1279..1424Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10528 1280..1424 +
1694079059.8531146-CDS-S-dermatodea_contig10528:1279..14241694079059.8531146-CDS-S-dermatodea_contig10528:1279..1424Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10528 1280..1424 +
1622924161.6627562-CDS-S-dermatodea_contig10528:3388..35401622924161.6627562-CDS-S-dermatodea_contig10528:3388..3540Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10528 3389..3540 +
1694079059.8619359-CDS-S-dermatodea_contig10528:3388..35401694079059.8619359-CDS-S-dermatodea_contig10528:3388..3540Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10528 3389..3540 +
1622924161.6724691-CDS-S-dermatodea_contig10528:4988..51891622924161.6724691-CDS-S-dermatodea_contig10528:4988..5189Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10528 4989..5189 +
1694079059.8782022-CDS-S-dermatodea_contig10528:4988..51891694079059.8782022-CDS-S-dermatodea_contig10528:4988..5189Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10528 4989..5189 +
1622924161.6802676-CDS-S-dermatodea_contig10528:6577..67151622924161.6802676-CDS-S-dermatodea_contig10528:6577..6715Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10528 6578..6715 +
1694079059.8887827-CDS-S-dermatodea_contig10528:6577..67151694079059.8887827-CDS-S-dermatodea_contig10528:6577..6715Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10528 6578..6715 +
1622924161.6876903-CDS-S-dermatodea_contig10528:7617..77731622924161.6876903-CDS-S-dermatodea_contig10528:7617..7773Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10528 7618..7773 +
1694079059.8969805-CDS-S-dermatodea_contig10528:7617..77731694079059.8969805-CDS-S-dermatodea_contig10528:7617..7773Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10528 7618..7773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10528.371.1

>prot_S-dermatodea_contig10528.371.1 ID=prot_S-dermatodea_contig10528.371.1|Name=mRNA_S-dermatodea_contig10528.371.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=264bp
MRHKGAAVLTRALRRFGSGEGKDEAVTREACGALRSVTLGDDRRKDFSGT
YDNVKALVSAGAVPLLLEVARGFEDDSATVSSVYLALKQLAANDESVKLI
VENGGLELVSKAIVSFPLEAVLCRAGLSLFRNVSGNDALKTRLLSEGGLR
LVLGCMSQHKDDKTLQEHGCATMAAMALRSPPNGARIVSEGGISAVTGAM
LRHPTVQALQRQACLCIRNIAARGPSLRTRMLDEGCETVLREAGKLRGCV
DEAYGALRDLQCEV
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mRNA from alignment at S-dermatodea_contig10528:1271..7773+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10528.371.1 ID=mRNA_S-dermatodea_contig10528.371.1|Name=mRNA_S-dermatodea_contig10528.371.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6503bp|location=Sequence derived from alignment at S-dermatodea_contig10528:1271..7773+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTCTTTCATGAGGCACAAAGGGGCCGCGGTGCTCACGCGTGCGTTGAG
GCGTTTCGGATCCGGGGAAGGCAAAGATGAGGCTGTCACGAGGGAGGCGT
GCGGCGCGCTTCGATCCGTCACTCTAGGGGACGACCGGCGAAAGGACTTT
TCAGGTCTGTGGTCACTTTCTCTTCCAGCAGTCTTAACTGATTCGCTACG
GCATAGTAGAGTATCGGTGTTACCAGTTGGGTGCCTCGCGCTAGGATATG
TAGATTGGTTGGTGTTTGCGGCTGCAGGGTAGATCGCCCCCGGGCTGTTT
GCTGCGCTTGGCGGATTTGCTTTGTCGCTGCGGGCTGTGGCAGCGTCGAC
ACACGCTCGGCCGGTGAGTCTGGTTTAGCCTGGGTTATTGAGAGATATAC
TAACACTTGTGCCGTTATTGGTGAAATATTATTGACAGGATTGATCACCC
TGGCCATTGGCGTCGCCCGTGCGCGTAGACACTTATCTGGGCGATGCTTC
GACGGTTATGGTGTGATGTTGAGATGGTGACATCGTTGCGCATGCCGAAG
TACGGCAGGCTTGTGCTCCGAATACATGCCGCACGTAGTCCTCGCGCGCG
CAACCCTGACTGCCCGTTTTCTAACGATTTCCTGGGGTTGTCGTTTTTTA
TGGGTCGGATTACGGTTTGCCTCGAGGTGTGTCCCCCTTCCCGTCGATCT
GTTTTAGCAGAGCACGGGATCCGACCATTTGCACGACAGCAGCAATTGCC
ACTCACGCTTTGAGTTCCCCCAAAAAAGAAAAAAGAAAAACGGAGCCCCG
CTCGCTTGAAAAGCGTTTGTTGTTTGCCAACCCGCGTTATTGCGCGCCCT
TGCTTGCCCTTCGTCTAAAGTCTTAACTATTAATAGCAGGGTTGGCTGAT
GTTGCGGTGGCGTTGGATGGCGTGTCTTTTCGTAGCGGATCGACATAGTA
ATACATTTTTCGTCGGGCAGATGTTTCCCTCTTTGCCATCTCTTTTTAAC
GTTTTCGTCATGACGCCATGAGTTAGCTGTTCGCTCAAATTTGCGTTTTA
TGCAGAACGGGTGCGAGCAAACCTCGAGGCACCGGGCGTCGACCCAACCT
TACCTTTACCCTATAACCCTTACCCTAACCCTTACCCTTACCCTAACCCT
GAAGGAGACCCAACCGACGTGCCACGTCAGAGCGGAATTTTGTCAATGCG
CGTGCGGATCACCAAACCTCTCAACCCCGGCCAATGACTCGCTGCGGAGC
TTGTGATTGGTTGACTACAGACAGCAGTCACAATCGCCTTTTTTTACAAC
GGTAGAAAATGTTGCTGTTTCTAAAATACGCTATTAATAGGCTCTTCTCG
GGTAGGTGGTTGTTTTTTTTTGCAGGCGCCGGGCTGGTTGGAAGTTTGAA
GTTCTCAGCTGTTGTCTTGTCTTGGAGGGTGCGTGCGACATTGTGTGTTC
AAGCTTTCGGCGTCATTTTTGTTTTGTTTTTTGTGACAGTTGAGCTTCCG
TCAGGCAGGGAAAAATTGAGAAGCCCCTTAGCATGACGTTTTTTTTTTGT
TTTTTTCCGGGCAGTTGTGCTTCCGTCGGGGTTGAGAGAAACATCGAGAA
GCGCTTTGAGCCCAACAAAGGCGATCCGACTACTTGATCTATCTTGATAT
ATATTGATAGGTATTGATCTATCTTCATCGATCTTGATGTGTATTGATCT
ATCTTGATCTGTCTTGATCTATCTTGATCTATTGATTTTTGTGTGAACGT
GTGGGGTCATGACCCGTCATTGAATTCTTAGCAACAGTTACAGCTACGCT
TGTACGTTTTTACGCACGCAAAAACCCGCGCTCGAAAGGTCAGACCGCAA
AAACAAACGAACGTAAATCATTAAACAAATCGTTTATCATACATACTGTA
ATCAACACCGCCTATTGCGAGTGTTATTCTTCGCACACGAGCGCGAAAAA
AACTCAGGCCGAAACAAGTACAATAAAATCGTCTTTGCCGAAGGAACGTC
ACACAGTATGATAGCACGAAAGGAGCAGCATCACAGGCGGACATGGTCAC
ATTTTCACACGCACAGCGCCTCGCCCCGCGTCTTCCCGTGTGGCTTGACA
ACGCTTTGCTTGGGACAGGAACGTACGATAACGTGAAGGCCTTGGTGTCT
GCGGGAGCGGTACCGCTGCTGCTTGAGGTGGCGAGAGGTTTCGAGGATGA
CTCCGCTACCGTGTCGTCAGTGTACCTGGCCCTCAAGCAGCTCGCGGCCA
ACGACGAGAGCGTTAAACTGGTGCGGTTTCGCTCCCGTAGGGTGTGTTTT
GTTTTTGCTTTGCTTGCCCTTGGCTTTGTGGGCCTTGTGTGATTGCTTCC
GTGTTTTCCTTAGTTTTTCGGGTTTTTTTTTTTGGGGGGGGCTTCGTGTC
TGTGTGTTTGGCTGCGTGTTTCTTCGGGGGGGAGGGGGGGTTGTATGCGG
TCTGTGTGCTTGTGTTGGTGTTTGTGTGCGTGTGTGTGTGCGTGTGCGTG
TGCTGGTTGTGCGTGCATGTTTTTTGTTTGTAATTGGCATTTGTACGAAG
AGTGTCTCTATTTCTGTGTATTAATAATTGGCTGTGTGTTTATTCACAGT
GTTTGTGTGTGTGCGTGTTTGTCGTTGTGCACTTGTGTGTGTATTTCTGT
GGTTAGCTATTCCTGTGTGCATCATCATCATCATCATCATCATCATCGTC
TGTGTGTGAGATTTCTGTCTGTCTGTGTGTGTGTGCCTATGTGCGGTACT
CTGTGAGCCAGTGAAAACGGCGCGATCTGCCGTTGGACTGGGGGGTGCCT
TTGATGGGGACCTTTGAGCCGGCGTCGGAACGGTCTAGTTTGTTATGCCT
GTTCTCGAGCAGGTGGCGCGCTCTCCTGCGCTCCTCAGCAACGGCGTGGT
CGGCGCTTGTGTTTCTGCCGCGGAAATTGCCGTTCGGTGGATCTTGCTTC
GATCCGTTGAGGGGCCTAATGGGGAGGGTGATCTTGATCTTGATCTTGAT
CTTGATCTTGATTTCATGGTGGTGGTGAGGATCTTCCGTTAACTTTGGCG
TCAAAATTCCGGAATGGTCCCAAGATCGATTATACATTACAATTGCAAAG
AAAAACAAGGAGCCTGAGCGCTCGCTTTGAATCGAAATACTACATGTTAG
GTGAGAGAGAGCTTTATCTTAGATGTAATTGTACTTGTAAATGGTGTTGA
TTAAAAGTCGATACAGCAGTACGCACATCATTGTCATTCCCATCTCCAAA
CTGAGAGGTGGCTCTCTCCGAGATACCCCTGCCCTCCCCGCCACCTTCGC
TAACACCTTCGCCAAACCGCATCGGTTCGTGTGCCGCCCCATCCAGCGTA
CCATCGCCATGCATACCGACGTGTTTTCCCTCTCGAAACTATATATTTTT
TTATATCTTGAGGCGCCTATCACACAAGTACAGTATGTATTGTTTATTGT
TACAATTCCTCCGGAGAGGGTGTGGTGTGTCCACCCTGGGCACCCGATTT
TCCTGTCAACCTGCCGCCCCATCCAGCACACTATCGCCATAGTAGACTAT
CGCCATGTTTTTGCTGTCGGAATTATTATTTTGTGTTTTCACATTTTGAG
GCGCATAAAAATATGTGTATATACTTCGTATATATATGTTGTGTGTGTTA
CCATATCTCCGGAGAATTGTGTTAACACTTGGCGCCCCGTTTCCTGTTGA
CCGCGTTCGCCCACGCAGATCGTCGAGAACGGAGGACTGGAGTTGGTGAG
CAAGGCTATCGTTTCCTTTCCTCTCGAGGCCGTGTTGTGCCGAGCGGGGC
TGTCGCTTTTCCGGAACGTTTCGGGGAACGACGCGCTCAAGACGCGGCTG
CTGAGCGAGGGGGGGCTGCGGCTTGTGCTGGGTTGCATGTCACAGCACAA
GGACGACAAGACACTTCAGGTGTCGTAATGCATTTAGTACTGAATGCCGC
TTTGCAATTTGTTTACTATTAATAGCGATTTAGAGTTGACTTTTGATGCG
GAATTTCATAGTACAGTATACAATTCGTGATGCGGAATTTCCTTACAGTA
TACGATCGTGATGCCAAAAGTCATCGGGATTTTAGAGTAGTACTGTATAT
TACAGAGCTGGGTTTTGTGCCAACAGACACCAACGAAAATAGCCCACGGG
TGGCTACCCACTACAAGAGTGAAGTAAATACCAGGTAATTGATTGATTGA
TTGATTGATTGATTTATTGATTGATTGATTTTCACACTTACAACCGACCG
GCCCGCCTTTTTTGCAATTAATTGCAAAAGTGGATGCTGATTCCGCTATC
TCGTGGTCACGTGAAGGCACAAGAGCAATTGAAATCCAGTACACACCCCT
ACACCGAACAAAAAACTGATACAGATAATGGATATTGGATAATAGATTAT
AGATAGAAGGCGTGTTGAGGAGAAGGAGTTGTGTTGCTTGTTGGCGTTGT
GCCATCTCTCGCCGACCGTGCGGTTGTTCACTGTTGTTAGTGCTGGTGTT
AGTGCTGGTGTTGGTGTCGGTGGTGGTTGTGGCGGTGCTGTTTTTTTATT
GCTCTCGCGTTTTACTGGTATCACAATTCACCAGTGGTCGCAACGAAAAC
ATTCATTAATTTACTGGTGATTTAGCTTTCAAAGCTACCTTTGACAAAGT
CAGAATTTCCTTGCGGACGATACGCGGCGGTACGCGTTTTCTTGTTCCCA
AAACACACTGCAATTCTTTGACTATTAATAGCTGGTTGTCAAACTCAGCG
CCTTAATCTTGCCAATGGACGAAAAGATCAAACAACCGGGAATAATCACA
TGGTCGAAATATGGCCAAAACTAAACAAGGGAAAACACTTGTTTCTTTAA
TAATTGCCTATAGCCTGGTATAACGGTACGCTATGTAGCATAACATGGCT
GGGCTTGACCGGCCTTTCGTAGAAGGAAGGTATCTGTGTCGATTTTGCGA
GCCCCCGCCGGCGCGTGTCTGTGCCTGGACGGCGTTTTTCGCACTCATTT
GATTGGTTTGCGTTCAGCAAGCGCTTGCGGCAACACATTCCACCAATCGT
TTTATTTTGGCTGCAAGACCATATCATATCCCGGGGTTACATATCGTATC
ATACGAAAGCATGGTGTACAAGCAAAGATGTTGATGTGGTGATGCGCGCG
CGCTACAAGTATGATTCTGCCAAAGAGGGGGCACTCCGCGTGGCGTTTGA
AAAAAAAACACTATTTTTATTTTTGTGTTTATTTTTTCCCCTTTTTTGGA
AATATATCATCTGTCGCCGCGCGCCCTGCGATCCCCAAAATGTTATGAAA
ATTGTAGGAGCACGGGTGCGCGACGATGGCAGCGATGGCGCTCAGGTCGC
CGCCCAACGGTGCCCGCATCGTGTCGGAGGGTGGGATATCGGCGGTGACC
GGCGCTATGCTGCGGCATCCAACCGTCCAAGCTCTGCAGCGGCAGGTCAG
TAGTGTGTTTTTTTTATCTGTATCTGCCCCTTAACGCGAGGTCTGCCTAT
GTGTATACACTGGCTTGCAAACGGTTTTCACTCAACAGGTTTCCTGGGAA
GAAAAAGGGTCCAAGCTACCGTACGCCTGTCGCGGTTTGTGTTACAGTAG
TTATGGTTGGCACTGCTGTTACTGTATGTAGGAGTAGATTTTCTGGGGGG
TTATGGACAGGAGGGCTCAATCAGAACGACGGGAGAACCAGTAAGACGAA
ATGAATGTGGTATAAATTAATATTCTTGGCTCACAAAGCACATAAAATAT
ACATTGCCAGAATTTTGCGGAGTACAAAGACACTTGTACCATATATAACC
ATATAGCATCACACATGATATGGTATCAGATATGGCGTGAAACCGTAGTG
AGCCTCCGTAGGTGAAGCTTGGAAGGACCATCTTCCCTCTTTAAAAAGTG
GGGACCCCAACAACGCTCGCTCTATGTTTTTGTAATCGTTGTATTTTTTA
TGTGGTTGTTTTTACCCTTAACACTTAGCTGTGCTATATTCTATATATAG
CATCTCACCACATGTCGGCTCGGAGTAACCCGATCGTCTGTACGTGTGCA
AATCAATCAATCAATCAATCATTCAATCAATCAAGTAAATAATGAATTAA
TCGATGAATCAATCAATCAATCAATCAATCATGCTACGGTTGACGTGTAC
GTTCTTTTTTGCCACCCCCCCCCCCCCTAAAACAGTCAAATAATTTCAAA
AACAATAGAGCGGGCGTTAGGGCCCCACCTTTTTTTATTTAATTATTGTT
CTAGCTACCTATTGAGGCTTACCTTACGTATGGCGCTATGATTTACGCTA
TGTAAACACCCCCCCCCCCCGGGACGGAATGTACGCAACCGTGGCAGGCG
TGTTTGTGTATCCGCAATATTGCCGCCCGTGGGCCTTCTCTGCGCACGAG
GATGCTGGACGAGGGGTGCGAAACCGTGTTGAGGGAGGCGGGCAAGCTGA
GGGGCTGTGTGGATGAGGCCTACGGGGCCTTGCGGGACCTCCAGTGCGAG
GTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10528:1271..7773+

>mRNA_S-dermatodea_contig10528.371.1 ID=mRNA_S-dermatodea_contig10528.371.1|Name=mRNA_S-dermatodea_contig10528.371.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at S-dermatodea_contig10528:1271..7773+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGCACAAAGGGGCCGCGGTGCTCACGCGTGCGTTGAGGCGTTTCGG
ATCCGGGGAAGGCAAAGATGAGGCTGTCACGAGGGAGGCGTGCGGCGCGC
TTCGATCCGTCACTCTAGGGGACGACCGGCGAAAGGACTTTTCAGATGAG
GCACAAAGGGGCCGCGGTGCTCACGCGTGCGTTGAGGCGTTTCGGATCCG
GGGAAGGCAAAGATGAGGCTGTCACGAGGGAGGCGTGCGGCGCGCTTCGA
TCCGTCACTCTAGGGGACGACCGGCGAAAGGACTTTTCAGGAACGTACGA
TAACGTGAAGGCCTTGGTGTCTGCGGGAGCGGTACCGCTGCTGCTTGAGG
TGGCGAGAGGTTTCGAGGATGACTCCGCTACCGTGTCGTCAGTGTACCTG
GCCCTCAAGCAGCTCGCGGCCAACGACGAGAGCGTTAAACTGGAACGTAC
GATAACGTGAAGGCCTTGGTGTCTGCGGGAGCGGTACCGCTGCTGCTTGA
GGTGGCGAGAGGTTTCGAGGATGACTCCGCTACCGTGTCGTCAGTGTACC
TGGCCCTCAAGCAGCTCGCGGCCAACGACGAGAGCGTTAAACTGATCGTC
GAGAACGGAGGACTGGAGTTGGTGAGCAAGGCTATCGTTTCCTTTCCTCT
CGAGGCCGTGTTGTGCCGAGCGGGGCTGTCGCTTTTCCGGAACGTTTCGG
GGAACGACGCGCTCAAGACGCGGCTGCTGAGCGAGGGGGGGCTGCGGCTT
GTGCTGGGTTGCATGTCACAGCACAAGGACGACAAGACACTTCAGATCGT
CGAGAACGGAGGACTGGAGTTGGTGAGCAAGGCTATCGTTTCCTTTCCTC
TCGAGGCCGTGTTGTGCCGAGCGGGGCTGTCGCTTTTCCGGAACGTTTCG
GGGAACGACGCGCTCAAGACGCGGCTGCTGAGCGAGGGGGGGCTGCGGCT
TGTGCTGGGTTGCATGTCACAGCACAAGGACGACAAGACACTTCAGGAGC
ACGGGTGCGCGACGATGGCAGCGATGGCGCTCAGGTCGCCGCCCAACGGT
GCCCGCATCGTGTCGGAGGGTGGGATATCGGCGGTGACCGGCGCTATGCT
GCGGCATCCAACCGTCCAAGCTCTGCAGCGGCAGGAGCACGGGTGCGCGA
CGATGGCAGCGATGGCGCTCAGGTCGCCGCCCAACGGTGCCCGCATCGTG
TCGGAGGGTGGGATATCGGCGGTGACCGGCGCTATGCTGCGGCATCCAAC
CGTCCAAGCTCTGCAGCGGCAGGCGTGTTTGTGTATCCGCAATATTGCCG
CCCGTGGGCCTTCTCTGCGCACGAGGATGCTGGACGAGGGGTGCGAAACC
GTGTTGAGGGAGGCGGGCAAGCTGAGGGGCTGTGTGGATGAGGCCTACGG
GGCCTTGCGGGACCTCCAGTGCGAGGTGGCGTGTTTGTGTATCCGCAATA
TTGCCGCCCGTGGGCCTTCTCTGCGCACGAGGATGCTGGACGAGGGGTGC
GAAACCGTGTTGAGGGAGGCGGGCAAGCTGAGGGGCTGTGTGGATGAGGC
CTACGGGGCCTTGCGGGACCTCCAGTGCGAGGTG
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