mRNA_S-dermatodea_contig10524.370.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10524.370.1
Unique NamemRNA_S-dermatodea_contig10524.370.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10524.370.1 vs. uniprot
Match: A0A067CKU1_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CKU1_SAPPC)

HSP 1 Score: 73.2 bits (178), Expect = 9.810e-15
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:   61 GACMQCDPVINVCPPGCQALIDDLYVGCDGVTTPDGLFYDPDNSIEGEWSDSVRV 225
            G+CM CDP  N CP  CQ LI+ LYV CDGV +P GLF+DP   I G W+  V V
Sbjct:   56 GSCMSCDPAQNKCPAKCQPLINTLYVDCDGVYSPPGLFFDPAAKIHGYWNGQVNV 110
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BLAST of mRNA_S-dermatodea_contig10524.370.1 vs. uniprot
Match: D8LR01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR01_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.530e-12
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  121 IDDLYVGCDGVTTPDGLFYDPDNSIEGEWSDSVRVQ 228
            +D+ Y  CDGVTTPDGL++DPDN+IEGEWSD V+ Q
Sbjct:    1 MDNFYADCDGVTTPDGLYFDPDNAIEGEWSDKVKAQ 36
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BLAST of mRNA_S-dermatodea_contig10524.370.1 vs. uniprot
Match: A0A6H5JA51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA51_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 3.080e-12
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  121 IDDLYVGCDGVTTPDGLFYDPDNSIEGEWSDSVRVQ 228
            +D+LY  CDGVTTPDGL++DPDN+IEGEWSD +  Q
Sbjct:    1 MDNLYSHCDGVTTPDGLYFDPDNAIEGEWSDKIEAQ 36
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10524.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A067CKU1_SAPPC9.810e-1556.36Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
D8LR01_ECTSI1.530e-1269.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA51_9PHAE3.080e-1269.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10524contigS-dermatodea_contig10524:7062..7924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.1e-09
Seed eggNOG ortholog112098.XP_008613756.1
EggNOG OGs2CXBZ@1,2S4KE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_002280.1
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924161.592299-CDS-S-dermatodea_contig10524:7061..71961622924161.592299-CDS-S-dermatodea_contig10524:7061..7196Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10524 7062..7196 -
1694079059.8202963-CDS-S-dermatodea_contig10524:7061..71961694079059.8202963-CDS-S-dermatodea_contig10524:7061..7196Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10524 7062..7196 -
1622924161.6010478-CDS-S-dermatodea_contig10524:7831..79241622924161.6010478-CDS-S-dermatodea_contig10524:7831..7924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10524 7832..7924 -
1694079059.8318582-CDS-S-dermatodea_contig10524:7831..79241694079059.8318582-CDS-S-dermatodea_contig10524:7831..7924Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10524 7832..7924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10524.370.1prot_S-dermatodea_contig10524.370.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10524 7062..7924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10524.370.1

>prot_S-dermatodea_contig10524.370.1 ID=prot_S-dermatodea_contig10524.370.1|Name=mRNA_S-dermatodea_contig10524.370.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=76bp
QACVGTAELISDKTATLGNAGACMQCDPVINVCPPGCQALIDDLYVGCDG
VTTPDGLFYDPDNSIEGEWSDSVRVQ
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mRNA from alignment at S-dermatodea_contig10524:7062..7924-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10524.370.1 ID=mRNA_S-dermatodea_contig10524.370.1|Name=mRNA_S-dermatodea_contig10524.370.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=863bp|location=Sequence derived from alignment at S-dermatodea_contig10524:7062..7924- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGTGCGTGGGGACGGCGGAGCTTATTTCCGATAAGACCGCGACCCT
GGGGAATGCCGGCGCCTGCATGCAGTGCGACCCGGTCATTAATGTGAGTA
GGAAATCCCCTCGTACAATGCGATGTTCTCGAAATGATCGCTGATTTGAT
TGTTTTTTTGTCATTGATTTGATTTGATTTGATTTGATTTGATTTGATTT
GATTTGATTTGATTTGATTTGATTTGATTTTATTTGATTTGATTTGATTT
GATTTGATTTGATTTGATTTGATTTGATTTGATTTGATTGGTTGATTTAC
AACAACCGTCCGGCCCATCAATTTTTGTCGGCGAGTTTGTTATGTTTTTT
CATTTGAACACGCGGGTTATATGTCGTGCAACGAAGCAGGGTCGCCGGTG
GCTCCGCAGACCCCCTCGTCTGACTTCGAATCACCGGACCTCCCCATTTC
CTCGAAGCGAAGTGCCTTGTGTCGAGCTTTCAATCGCCGCTGCGCTCTGC
CTTGGTCCCTCGTGACGAGCGTTCAATCGCCGCCGCGCTCTGCCGTTTGG
TCTCTTGTATCGAGCGTTCAATCGCCATCGCGTTGCTTCGGTCTCCTGTA
ACGAGCTTTCAATCGCCGCATCGATCCCTCGGTACCATGTATCGAGCTTT
CAATCGCCGCCGCGCTCTGTCGTGCCTCTCTTGTAACGAGCGTTCATCGC
CGCCGCGTTGTCTCGGTCGGCTTCGCAGGTGTGCCCCCCCGGGTGTCAAG
CTCTGATAGACGACCTGTACGTTGGGTGCGATGGTGTCACCACGCCCGAC
GGCCTCTTCTACGACCCGGATAACTCCATCGAAGGAGAGTGGTCGGATTC
GGTGAGAGTCCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10524:7062..7924-

>mRNA_S-dermatodea_contig10524.370.1 ID=mRNA_S-dermatodea_contig10524.370.1|Name=mRNA_S-dermatodea_contig10524.370.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at S-dermatodea_contig10524:7062..7924- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGTGCGTGGGGACGGCGGAGCTTATTTCCGATAAGACCGCGACCCT
GGGGAATGCCGGCGCCTGCATGCAGTGCGACCCGGTCATTAATCAGGCGT
GCGTGGGGACGGCGGAGCTTATTTCCGATAAGACCGCGACCCTGGGGAAT
GCCGGCGCCTGCATGCAGTGCGACCCGGTCATTAATGTGTGCCCCCCCGG
GTGTCAAGCTCTGATAGACGACCTGTACGTTGGGTGCGATGGTGTCACCA
CGCCCGACGGCCTCTTCTACGACCCGGATAACTCCATCGAAGGAGAGTGG
TCGGATTCGGTGAGAGTCCAGGTGTGCCCCCCCGGGTGTCAAGCTCTGAT
AGACGACCTGTACGTTGGGTGCGATGGTGTCACCACGCCCGACGGCCTCT
TCTACGACCCGGATAACTCCATCGAAGGAGAGTGGTCGGATTCGGTGAGA
GTCCAG
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