mRNA_S-dermatodea_contig10509.363.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10509.363.1
Unique NamemRNA_S-dermatodea_contig10509.363.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10509.363.1 vs. uniprot
Match: A0A6H5J9C4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C4_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.550e-10
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 3 
Query:    3 VFSLHVVMWEAIAQERAGGGKPIGERLLSNPNARLPLVDMDCSEAVESNIKSIVWRCGSAEKSDRPPMDEVSKLVT 230
            +FSLHVVMWE I  ++AG G P+GE LL  PNARL L        +   ++ ++ RCGS    +RP M  V+   T
Sbjct:  432 IFSLHVVMWEVITNQKAGIGPPVGELLLRAPNARLSLESASGPAPLIERMQDLLDRCGSLHDKNRPTMKLVALSAT 507
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10509.363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J9C4_9PHAE4.550e-1043.42Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10509contigS-dermatodea_contig10509:3110..4657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size366
Cds size342
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10509.363.1prot_S-dermatodea_contig10509.363.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10509 3133..4657 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924160.9197223-UTR-S-dermatodea_contig10509:3109..31321622924160.9197223-UTR-S-dermatodea_contig10509:3109..3132Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10509 3110..3132 +
1694079059.2861998-UTR-S-dermatodea_contig10509:3109..31321694079059.2861998-UTR-S-dermatodea_contig10509:3109..3132Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10509 3110..3132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924160.9324846-CDS-S-dermatodea_contig10509:3132..31411622924160.9324846-CDS-S-dermatodea_contig10509:3132..3141Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10509 3133..3141 +
1694079059.2961278-CDS-S-dermatodea_contig10509:3132..31411694079059.2961278-CDS-S-dermatodea_contig10509:3132..3141Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10509 3133..3141 +
1622924160.9450529-CDS-S-dermatodea_contig10509:3669..38491622924160.9450529-CDS-S-dermatodea_contig10509:3669..3849Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10509 3670..3849 +
1694079059.312312-CDS-S-dermatodea_contig10509:3669..38491694079059.312312-CDS-S-dermatodea_contig10509:3669..3849Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10509 3670..3849 +
1622924160.9583335-CDS-S-dermatodea_contig10509:4504..46571622924160.9583335-CDS-S-dermatodea_contig10509:4504..4657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10509 4505..4657 +
1694079059.3302531-CDS-S-dermatodea_contig10509:4504..46571694079059.3302531-CDS-S-dermatodea_contig10509:4504..4657Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10509 4505..4657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10509.363.1

>prot_S-dermatodea_contig10509.363.1 ID=prot_S-dermatodea_contig10509.363.1|Name=mRNA_S-dermatodea_contig10509.363.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
MWEAIAQERAGGGKPIGERLLSNPNARLPLVDMDCSEAVESNIKSIVWRC
GSAEKSDRPPMDEVSKLVTKVLRHLENPDENPLSVVAPPPLRSHEQQQTS
APEAATAARALKSN
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mRNA from alignment at S-dermatodea_contig10509:3110..4657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10509.363.1 ID=mRNA_S-dermatodea_contig10509.363.1|Name=mRNA_S-dermatodea_contig10509.363.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1548bp|location=Sequence derived from alignment at S-dermatodea_contig10509:3110..4657+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGTGTTCAGCCTGCACGTCGTCATGTGGGAGGTAAGCCCCCTGCCGACG
TTTTTTTGTTATCCAATCTTGAAGCCCAGCATGCGCGCCGAAATGTAAAT
GAACAAAGACTCGTTTTGTTTTTACGAGACCGATGTATTTATTTTATTCT
TAATGTAGAGGTCGATCGTGTGGTGCATCATCGCACACTTGCCACGCAAG
GCCTGGTGAGTCGATATTCACCAACATGAGAGTACTTCGCAACGCACATT
GTTTGCCTCGCCGATGGTACTGCTACTGCCGAGGCATGCTCACTTTTCGT
TTTGTTTGTCCAAGCAAGGCAGGCCAACAAGCAACACAGGTGTGCACCTC
GTCGAAAATTTGCAGCTTCTTTTATCTCCCTGTCCGCCATTTCCCTGGAG
ACGACGTCCCGAAACTCTAGCAGTGGCATAGGCTTGCGACGTGTGCACTG
TGGGAAATAGATTCGAAGCCTCCCAAGCCTCCCGCATGTGAAGCGTGGCT
GCATCCTTACCACCACCCCCCCCCCCTTTAACCACTGAATAAACGCGGCG
TCGAAAACAGGCCATCGCTCAGGAGAGAGCTGGCGGCGGTAAGCCCATCG
GGGAGCGACTACTCAGCAATCCCAACGCTCGTTTGCCCCTGGTAGATATG
GACTGCTCCGAAGCCGTCGAGAGCAACATTAAGAGTATTGTGTGGAGGTG
CGGATCAGCCGAGAAAAGCGACCGACCACCCATGGACGAGGTGAGTAGAA
GCGGGCGGGTGTACGCTGTGTGTATGTGTGCGTTTATCAGCGAGCGAGGT
GCGGGCGGCGCGGCGGGCGGGGACTATGTCACTTGTTCATCTGTAAGGTA
TCGTTGTATTTTGCATACCTCACCCTCCATGGTTGGCCTGGGCCACCGTG
CTTAACATAAAGGATGGGTCCCACGCTCCCTTTATTAAAATATGTGTTTT
GTGGGAGGGGCCATAACCACTTTACCCTGAGAGATCCCGTCAAACAGACA
AACGGGGTTGTATAGAGCATCAGAGTCTCACCCCACTCGGCGAACTTGAC
ATTGATTTCAGAGGGCACTAGAGGTGTTGCTACAGTTGTTGGAAGTTCAA
GTTTCGAGGGTGGCAGCCGTGTGTTCTCGGGAGGGCCTCGTGCGGTAAAA
GGAAAAAAACACACATTTAACGTGCCCGGGTGAAACTTACGTGTACTGAT
CTCCTTGTATCGGGCGTCTTGCGCGCACAGCATAAGCACGCCCCTCTCTG
TGAAGGAAATCCAAAATCGCTATCCAACGTTTTCGCATGCATGCGTGCGT
GCGTGCGTGCGTATGTGTGTGTGTGTTTAACAAGTTGTCGCACGAAAATC
CGGAAAAATCACCGCTCGCGCAATCTTTGCCCGCGTTTGTTTCAGGTTTC
CAAGCTCGTGACCAAGGTGCTCCGGCACCTGGAAAACCCCGACGAAAATC
CTCTCTCCGTCGTAGCCCCGCCGCCTCTGAGATCACACGAGCAACAGCAA
ACCTCCGCGCCCGAGGCGGCGACGGCAGCGCGGGCGCTGAAGAGCAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10509:3110..4657+

>mRNA_S-dermatodea_contig10509.363.1 ID=mRNA_S-dermatodea_contig10509.363.1|Name=mRNA_S-dermatodea_contig10509.363.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig10509:3110..4657+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTGGGAGATGTGGGAGGCCATCGCTCAGGAGAGAGCTGGCGGCGGTAA
GCCCATCGGGGAGCGACTACTCAGCAATCCCAACGCTCGTTTGCCCCTGG
TAGATATGGACTGCTCCGAAGCCGTCGAGAGCAACATTAAGAGTATTGTG
TGGAGGTGCGGATCAGCCGAGAAAAGCGACCGACCACCCATGGACGAGGC
CATCGCTCAGGAGAGAGCTGGCGGCGGTAAGCCCATCGGGGAGCGACTAC
TCAGCAATCCCAACGCTCGTTTGCCCCTGGTAGATATGGACTGCTCCGAA
GCCGTCGAGAGCAACATTAAGAGTATTGTGTGGAGGTGCGGATCAGCCGA
GAAAAGCGACCGACCACCCATGGACGAGGTTTCCAAGCTCGTGACCAAGG
TGCTCCGGCACCTGGAAAACCCCGACGAAAATCCTCTCTCCGTCGTAGCC
CCGCCGCCTCTGAGATCACACGAGCAACAGCAAACCTCCGCGCCCGAGGC
GGCGACGGCAGCGCGGGCGCTGAAGAGCAACGTTTCCAAGCTCGTGACCA
AGGTGCTCCGGCACCTGGAAAACCCCGACGAAAATCCTCTCTCCGTCGTA
GCCCCGCCGCCTCTGAGATCACACGAGCAACAGCAAACCTCCGCGCCCGA
GGCGGCGACGGCAGCGCGGGCGCTGAAGAGCAAC
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