mRNA_S-dermatodea_contig10504.360.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10504.360.1
Unique NamemRNA_S-dermatodea_contig10504.360.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10504.360.1 vs. uniprot
Match: D7FIG6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG6_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.950e-14
Identity = 55/122 (45.08%), Postives = 72/122 (59.02%), Query Frame = 1 
Query:   52 NREAVRAARRMKDKVAKRASENTPTRQAL-------------KALQEVAEKVRRYTEGSSSAEEKGEAAAT--VDEEQRKILLGLGALVSTEAPAAIQLLRDGGVAHLSVCMKAGG-AFPKT 369
            N+EAVRAARR+KDKVA+ +  NTP RQ               +   +  + +   T   +S     E AA   VDEEQ + +L LGAL+S+E  AA+QLL+DGG+  L+ CMKAGG  FPKT
Sbjct:  124 NKEAVRAARRIKDKVAQASRLNTPIRQXXXXXXXXXXXXXXPEGKSQPPQPLALATAAPASEASTPEQAAPSKVDEEQSQAMLALGALLSSEPAAAVQLLKDGGMVQLTACMKAGGEGFPKT 245
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10504.360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIG6_ECTSI5.950e-1445.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10504contigS-dermatodea_contig10504:363..7012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1e-12
Seed eggNOG ortholog2880.D7FIG6
KEGG koko:K19870,ko:K21991
EggNOG free text desc.protein binding, bridging
EggNOG OGsKOG4151@1,KOG4151@2759,KOG4234@1,KOG4234@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-28_000200.1
Exons4
Model size371
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10504.360.1prot_S-dermatodea_contig10504.360.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10504 363..7010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924160.7576153-CDS-S-dermatodea_contig10504:362..4011622924160.7576153-CDS-S-dermatodea_contig10504:362..401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10504 363..401 +
1694079059.19365-CDS-S-dermatodea_contig10504:362..4011694079059.19365-CDS-S-dermatodea_contig10504:362..401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10504 363..401 +
1622924160.768613-CDS-S-dermatodea_contig10504:2370..24631622924160.768613-CDS-S-dermatodea_contig10504:2370..2463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10504 2371..2463 +
1694079059.206074-CDS-S-dermatodea_contig10504:2370..24631694079059.206074-CDS-S-dermatodea_contig10504:2370..2463Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10504 2371..2463 +
1622924160.776866-CDS-S-dermatodea_contig10504:4398..45661622924160.776866-CDS-S-dermatodea_contig10504:4398..4566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10504 4399..4566 +
1694079059.2137077-CDS-S-dermatodea_contig10504:4398..45661694079059.2137077-CDS-S-dermatodea_contig10504:4398..4566Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10504 4399..4566 +
1622924160.7850406-CDS-S-dermatodea_contig10504:6941..70101622924160.7850406-CDS-S-dermatodea_contig10504:6941..7010Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10504 6942..7010 +
1694079059.2228105-CDS-S-dermatodea_contig10504:6941..70101694079059.2228105-CDS-S-dermatodea_contig10504:6941..7010Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10504 6942..7010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10504.360.1

>prot_S-dermatodea_contig10504.360.1 ID=prot_S-dermatodea_contig10504.360.1|Name=mRNA_S-dermatodea_contig10504.360.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=123bp
DGDALRDAKRTLELDPGNREAVRAARRMKDKVAKRASENTPTRQALKALQ
EVAEKVRRYTEGSSSAEEKGEAAATVDEEQRKILLGLGALVSTEAPAAIQ
LLRDGGVAHLSVCMKAGGAFPKT
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mRNA from alignment at S-dermatodea_contig10504:363..7012+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10504.360.1 ID=mRNA_S-dermatodea_contig10504.360.1|Name=mRNA_S-dermatodea_contig10504.360.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6650bp|location=Sequence derived from alignment at S-dermatodea_contig10504:363..7012+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGGAGACGCGCTAAGGGATGCCAAGCGAACGTTAGAGGTGGGCATGCG
CTTTCAACCCTTGCGGCACTGAATCCGAGTTGCGCGAATTATGGCCACCG
TCCGTGGATAATTTGGGGGCAGGGTACATGCACACGCATGAGCATCACGT
GCATGCCAGCTACTTGTACTCCCGGCAGGGATACCATTTTCCCACCGCCA
CCGCTACTATGTACGAAGGGCGAGGAGTAAGCCACCGTTCGGGTACTGTA
CCTTTTCCATGTGAAATATTGTCCGGGCGGGTGGACCCGAAAATCGGATT
CGGTTTCGAAGGGGCTACTGCTTTGTACTATCATACCGTGCTGTGAAAAT
GCGTGTGCGGTACGTTTACAGGGGTACACAATACCCAGGGCCAATTTTAT
GCTCAATTATTGTAATATTTCCAAGTCTCGTTTTTATGACGTTGCCCCGA
ACAACACCTTGGTAAGAAAATTTAAGGTCATGTTAGATTTTACGTTGACG
TTTCACGCCTGAAGGTTGATTGCAGATATTGTACTTGTAAGGCCATACCA
TATTTTTTTTGTGGTATTTTATTTTGGGTATACTCCTGTTTTGCGCCTTT
GGTCCTGGTTCCTATTATACTATTATTACTGTTTACCTCCGTCATAAAGT
GTGGGTACCTCGCTAGGTTTACTCTGCCGTGCGTGTGGCATTTGTTCCCG
TACGTTTTATGGTCGGTTCGGGTGTCTAAATGAACCATGGCCGGAGACAC
CTACCAACCGCGGCCGTCACACATATGTTGCTAAAGACAAGACGGCATGA
CTACTTGTATCATACCCCTTTTCTTTACGTTCGTGAAGTAACAAGAACAA
CGCTGTCGCAGCAATATCAACGGCTCGGCGTTTGCACGTCCAACTTAACA
CGCGTACTGCGTGAGGTGTAGAGCTGCATCGGACTCCACGCTGCGCTCTG
CCAGGCTGATTCCACGGCTCACCTTCTGTCTTTAATCATTGATATTATTG
ATTGAGTAGCACACTTACAACCGACCGGTCCACCAATGGCTGCGATCCCG
CTCGTGGTACTATAATCAGATGAGAAATCGAGAGATCGAAAAAAAACTAC
GGAACTACAGTACCTATATGTAGTACGTAAATAATATTTATTAGTTGGTA
CTGTACCGCTTTTAACGTTTTTTCCATGCTATTTCCTATACGATTTTGAG
GCCGATTATTTTGAGGCCGATTTTGTGTACTAAACTCCTTTCCAATTTTG
AGGCCAAGCAACTTGATTTTAGATTGAGCGACCACGCACACCTAACAGGC
GTAGCCGTGGCTACCTACTATAATCAGGACTACCAGGGGTAATGGTAAGA
ATGAATGGACTCAAACTCTCGGAAAGGAAGGGATATACCTCGGAATCATG
TACATACTTGTTCTTGCACAGTTTGTTTTTTTTGTTTTCGGGGTTTGGGG
TCTATACCTGCTGCTGTGCCAAGGTAGTGGGGGGCCACGGCCACGCCGCG
GGACGCGGGGGTGTAGCTCCGGTCCGCACCCCGTGGTCCGCACCCTACTC
CTTCTGTAAAAACCAAAAAAACCAAGATTATAATAGTAACATTCCTCATG
CTATACTCCTTCACGCGTGAGGGGAAACATTTCAGAATTTTTTCAAGAAG
TCGAAATCCCTCATCTTTATTAACGCCCCCGCACGCTCGGCTTCCTGGGC
CCGGCTTCCCACGCCTTCCCTTGGTACCGCCGCCACACCGTGTATCCTCC
AAACCCACGTATCGTCCTGCCAACGCATACCTCACAGGCGTAGCCGTTGC
TACGTACTAGTCGTCATGAATCGCCACCATCGTCATCATCATCATCATCG
TCGTCGTCATGGTCATATGATCGTTCATGCACTCCTGCAAATGTATTTAA
AGGTCTTCTTGTTTTCTTTTGCCGCGTTTTCTTCTCCCCGACCGGACCGG
GCCGGACCGTACACCGTACACCGGACGGCTCACGCGTGCAAATTGTTCGG
TTCGAAAGCTGGACCCCGGCAACCGCGAAGCAGTTCGGGCGGCCCGGAGG
ATGAAGGACAAGGTCGCTAAGAGAGCCAGTGAAAACACTCCTACCAGACA
GGTGCGCTCGGGTTCCCGATACATTGCCGAACGGAAAACGCGACCCCCCC
GCGGGGTTTCCACTGCAGCAGGTGGTGTCGTTTCGGGAGCCGCTACGGTT
TTGTGAATAAAAATATGCAAGATTTCTGCGGCTGACAATGCAAAGGAGAG
CATAACGATAACGCGAGAGTGACCCAAAGAGAGGGAGGGGGGGTTCGACT
TAATCCGACCCGACTTGTGGTCAGACACGCAAAGAGCAATGTTTTAATAG
TATGCAGTACAGTTGTATTATAACAGAACCCACAGCATCATATAAATGTA
GGCTTCCAGTAGTGAATAATGCTGAATATGGTATAATACGATGGTATTGT
AGCAGCACCCCATAGCAAAATATATAACGTAGGTTTCCACTGAGTTAGAT
TGGGCCATCTTTTTCCTCCACCAAAAAGATTGGTTGGACCGCAATACTAT
AATAGCTCTGTGTCCATAAATCTTTACTGTCTTGAGGGGGAGAAAAGCGT
ATGTTGTATAGTATTTTGTCTGTCGCGCAGGAGATAAGAGGCGTTTTTCC
ATCTTGTTATGCTCGCGCCTGATTGACCAGCCTAGACCATATCAGATCCC
GCTCTAAAAACTTGCAACATTATTATTGTTGCTACAGTAGCACGCCGACT
ATCCCCCCCCCCCCCTCTTTGGATTGCTCGTCATGTCGTGTCATGTCATG
TCATGTGTGATGTAATGAGTGATGGTCCGAAAAGAGACGCTGTGCGCGCT
CGTAGCTCGTATTCAGTCGCATTGGTGGTCCGCGCGCGTGGCGGACAGGC
GAGAATGGAAAAGAGGCGTTCCCAGGAAGGGACTTTACTACTTTGTACAC
GGGAAGAATTTGCCGAGAAACTTATGATAACCCGGCTAACTTTTAAATAA
TGTTGTATTTGGTACGCGCTGGCACGGGGCCCTGGGTATTGACCCAACCA
CCCTAACCCTAACCCTAACCCTAAACCTAACGCTAACCCATACTGCCATC
AGAAGCTTCATCTTCATCTTCATAGGAGGTCTCTAGGGCTCAAACACGCC
TGCGCCGCGTTTTAGCCAAATTTCCTCAACGGCCATTCCGACCACATTCC
GAAAACAGGTTGTCAGCCTGGGCCAGTAAAAACCGCGGGGAATTATTTTG
TATACGAAGTGTCAACACCTACTGGCTCCCAGGCGCCGAGAGCTGGGCTG
GTGATCCGCACGCAACGTTATCATGAGAAAAGACAAATCGTAGACATATA
TAGAGTTGTGAGGGCCCAGTTGTGAGTTTACGCTTGAAAGTTCTATACAC
CCAGGGAGATTGACGATAAGCATTGTAAGGCACTGAGCGTTGAGCATCTT
GTTTTTGTCGGGACTGGGTTTAAGTGGGGTCATACCAATTACTTGACGGT
GACGGTGATTGTGATGACGTTTGGTGTTATTTCGTGTGCTATTGTCAAGG
TCCAACTGGTGAAGAGATCGATGAACTCAAGCAAAAACGACCGAAAGCAC
TGGTGTGGGACAGACAGTTGCTCAAGTATAATACTTGTATTAGGAAGGGA
AACCTTCACTGCTGACAATATGTAGAATTGTATTCTGGTACACCCACGTG
ATTGACCATGGCTCTAAAAGTAGAAACCCACCCCCACACGCAGGAAAATC
CTTCTTCGGGACGACACATACTTTACAACTAATCAGTGTTTCACCATTGT
GAGCCACTAGTAATACTAATATTATTAATAGAGTGTACTGCTACCTGTTG
ACGCCGCCGCTGCTGCTGCCACAGTTTCGTACCGGCCACCTACCACCGTT
GTCACATACACCTCATAGACCGTACAGCCTCCGACTTCTTACCAACACAC
ACCTCACGGCCGTAGCCGCCGATCCCTACTAGCTTATAAAAAAGCAAAAC
ATCCATTAATCGCTCTTTTGCTTTGTTCAAACGCAGGCCTTGAAAGCCCT
CCAAGAGGTGGCAGAGAAGGTACGCCGTTACACCGAGGGTAGCTCGTCCG
CCGAGGAGAAAGGGGAAGCAGCAGCTACCGTTGATGAAGAGCAAAGAAAA
ATCCTGCTGGGCTTGGGAGCGCTCGTGTCCACCGAAGCGCCCGCCGCTAT
TCAGGTGCGGTCACACTTTTGCACTCATCAAGTGTCCCTGTTCACTGGTA
CTATTAATATTAATATTAGTACACCAACGTCTCAGTCAGGTGGAGGACCC
GGGTTCGAATGCGGACAGAGTCGGTGTTTATGTATTCTCTCTACCTCCGC
CGCGTAAAGCACGAGAGCGCGAGTGAAAGCAAAAAACCGAGAAATCGACG
AGCTGGGGGAGTGCCGAACCCAATGCATTCGCGATAAAAACGTAAGGTAA
GAATCGGGGAGAGCGATCCCTTGTGACCGCAGACGGACCTCGGACAAGCC
GGTCTATCACATGAGTGCAAAATAATAAAACGAAAAGAGGGACTTTAGGC
CAGTCGGCGTCTTCCGGATCCCGCTTGGAGTCGGACGGATTGATCAACTA
TTACGTTCTCCGGTGTGGTATGTGCCTTTGCTATTCATCGCACATTCGGC
TCGCTACTACTGTATGCACATTACGAGAGGTAACCGTATAAATATGTAGG
CATCCGTTCCAGCCAGTTGCAGAAAAGGTACAGCACAGGTAGGCATCCGT
TCCCACCAGTTTAAGAAAAGGTACAACACAGGTAGGCATCCATTCCAGCC
AGTGGCAGGAAAGGTACAACACAGGTAAGAATCCGTTCCAGCCAGTTGCG
GATAAAGATACAACACAGGTAGGCATCCATTCCAGCCAGTTGCAGGAAAA
TATACACCACAGGTAGGCACCCGTTCCTGCTGGTTGCGGATAAAGATACA
ACACAGGCAGGCATCCGTTCCTGGCAGTTGCAGGAAAGGTACACCACAGG
TAGGCATCCGTTCCAGCCAATTGCAGGAAAAGGTACAACACAGGTAGGCA
TCCGTTCCAGCCAGTCGCAGGAAAGGGTATAACACAGGTAGGCATCCGTT
CCCACCAGTTGCAGGAAAAGGTATACGAATTATACAACACAGGTAGGCAT
CCGTTTCAGCCAGTCGCAGGAAAAGGTACAACACAGGTAGGCATCCGTTC
CTGCCAGTTGCGGGAAAAGGTACAACACAGATAGGCATCCGTTCCAGCCA
GTTGCAGGAAAAGGTGCAGCACAGGGAGGCATCCATTCCAGCCAGTTGCG
GGAAAAGGTACAACACAGGTAGGCATCCGTTTCAGCCAGTTGCAGGAAAA
TATACAACACAGGTAGGCATCCATTCCAGCCAGTTGCGGGAAAAGTTTCA
ACACAGATATGCACCCGTTCCAGCCAGTTGCAGGAAAAGGTACACCACAG
GTAGGCATCCGTTCCCACCAGTTGCAGGAAAAGGTATATACAACACAGGT
TGGCATCCGTTCCAGGCAGTTACGGGAAAATGTATAACACAGATAGGCAT
CCGTTCTAGCCAGTTGCAGGAAAAGGTACAACGCAGGTAGGCATCCGTTT
CAGCCATTTGCAGGAAAAGGCACAACACAGGTAGGCATCCGTTTCAGCCA
GTTGCAGGAAAAGGTACAACACAGGTAGGCATCCGTTCCAGGCAATTGCA
GAAAGGTACAACACAGGTAGGCATACATTCTAGCCAGTTGCAGGAAAGGT
ACAACACAGGTAGGCATCCGTCCCAGCCAGTTGCAGAAAAAGGTATACCA
CAGGTAGGCATCCGTTCTAGCCAGTCGCAGGAAAAGGTATATACAGCACA
GGTACACAAGTAGTCAGGACCAAGTATGCCAAAACACACGCCTAGCACAG
CACACGATACAGTAGTATGGCCTGGCCTTACAACATCATCTGCAGTTTTC
CATCCTGCAGCATCAATAAAAGCTAAGGGTGTATTAATACTACGATGTGA
AGGGGCCAACATAAAAAAACAAGTCTTGAATAGGCTTACTCAGCATACAT
TTGGTCCCCTGACGAAACTAATGCTGTGTACCGCCGTAGCCTGATCTTTT
TTCTCATCTGACCGTGAACGAACGCGATTGTTTGTTGGCCAATAAGGTTC
AAAGCGCGACACAGTTCGTCAATGGTGTAATCAATAATCCGATTAACCAA
GCGGTGCCCAACTGACCGTCACTCGATTCGCCGATATCGCGCGCTCCTCG
ACTCGCTCCTCGCCAATCTAACAACTTTACCGCCAATAAATCGATTTTGC
AATCAACCAATCAATGTTGCAATCATCTGACCAGTCGATCAATCAATAAA
CGAACCAATCAGTAGCAATCATTTTAACAATCGATCAGTAAATCAATCCA
CCAATCAACCAATCAATCGATAAGCCAATCAATCAGTAGCAATCATTTTA
ACAACATATCAGTAAATCAATCCACCAATCAACCAATCGACCAACATTTT
AACAACCAATCAGTGAATCAACCAATCTATAGACCATTAAACTCCGCGCC
TGCGTATCGGCTGGCTTGCTACCCTGCAGCTACTGCGGGATGGGGGCGTG
GCGCATCTGTCGGTTTGCATGAAAGCTGGGGGGGCGTTTCCAAAAACGGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10504:363..7012+

>mRNA_S-dermatodea_contig10504.360.1 ID=mRNA_S-dermatodea_contig10504.360.1|Name=mRNA_S-dermatodea_contig10504.360.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig10504:363..7012+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACGGAGACGCGCTAAGGGATGCCAAGCGAACGTTAGAGGACGGAGACGC
GCTAAGGGATGCCAAGCGAACGTTAGAGCTGGACCCCGGCAACCGCGAAG
CAGTTCGGGCGGCCCGGAGGATGAAGGACAAGGTCGCTAAGAGAGCCAGT
GAAAACACTCCTACCAGACAGCTGGACCCCGGCAACCGCGAAGCAGTTCG
GGCGGCCCGGAGGATGAAGGACAAGGTCGCTAAGAGAGCCAGTGAAAACA
CTCCTACCAGACAGGCCTTGAAAGCCCTCCAAGAGGTGGCAGAGAAGGTA
CGCCGTTACACCGAGGGTAGCTCGTCCGCCGAGGAGAAAGGGGAAGCAGC
AGCTACCGTTGATGAAGAGCAAAGAAAAATCCTGCTGGGCTTGGGAGCGC
TCGTGTCCACCGAAGCGCCCGCCGCTATTCAGGCCTTGAAAGCCCTCCAA
GAGGTGGCAGAGAAGGTACGCCGTTACACCGAGGGTAGCTCGTCCGCCGA
GGAGAAAGGGGAAGCAGCAGCTACCGTTGATGAAGAGCAAAGAAAAATCC
TGCTGGGCTTGGGAGCGCTCGTGTCCACCGAAGCGCCCGCCGCTATTCAG
CTACTGCGGGATGGGGGCGTGGCGCATCTGTCGGTTTGCATGAAAGCTGG
GGGGGCGTTTCCAAAAACGCTACTGCGGGATGGGGGCGTGGCGCATCTGT
CGGTTTGCATGAAAGCTGGGGGGGCGTTTCCAAAAACG
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