prot_S-dermatodea_contig10503.359.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10503.359.1
Unique Nameprot_S-dermatodea_contig10503.359.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length235
Homology
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Match: D7FPL2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPL2_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 1.740e-72
Identity = 145/277 (52.35%), Postives = 171/277 (61.73%), Query Frame = 0
Query:    6 KDPLTDPDVEAAVPVKEGSKARFFVLRSLNHDNLAVSTVQNKWYVRRHSINPFNLAFE-QGKVFFFFSVNYSVNFQGCAEMTSRIPDMEMRTAEVTVMEFSVKWLRLCELPYSSANQIKNSFNEDNL-VGRSRDGMELNYESGRKLLKLLWGQPEIELPKQVAEHAKTAAFSGVEVYRRP-----PPQPMG----HTKMMRGSGE---GGTSGGLGGRN---------------------------------TLQLGPSQPQRPLGPPGFLFEIESQ 235
            KDPLTDPD+EA VPVK+G KARFFVLRSLNHDNLAVS VQNKWY RR +I PFN AF+  G+ FFFF+VN S NFQGCAEMTSR+P M  RT E  VMEFSVKWLRLCELP+S A+Q+KN  ++DNL + R+  GME+ YE+GRKL KL+W QPEI+LP+ V + AK A FSGV   R P     P  P G       ++R  G    GG  GG+ G +                                         P +  GPPGFLFEIES+
Sbjct:  226 KDPLTDPDIEAIVPVKDGEKARFFVLRSLNHDNLAVSAVQNKWYARRFNIMPFNSAFDGPGRAFFFFTVNQSNNFQGCAEMTSRVPQMGPRTEEEQVMEFSVKWLRLCELPFSVASQVKNP-SQDNLPIWRASHGMEIPYEAGRKLCKLMWAQPEIDLPQHVVQQAKDAPFSGVLPARSPASGGNPTGPPGMRXPXNNLVRVGGPPLGGGAPGGVEGVSGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVPPQFDGPPGFLFEIESE 501          
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Match: A0A7S2V1N4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1N4_9STRA)

HSP 1 Score: 110 bits (275), Expect = 8.530e-27
Identity = 66/146 (45.21%), Postives = 85/146 (58.22%), Query Frame = 0
Query:   27 RFFVLRSLNHDNLAVSTVQNKWYVRRHSINPFNLAFEQ-GKVFFFFSVNYSVNFQGCAEMTSRIPDMEMRTAEVTVM----EFSVKWLRLCELPYSSANQIKNSFNEDNLVGRSRDGMELNYESGRKLLKLLWGQPEIELPKQVAE 167
            RFF+++SLN+ NLAVS  Q KW   R      N AF Q  KV FFFSVN S +FQGCA M S I D +    E  V     +F V+WL +CELP+ +   ++N  N +  V RSRD  EL  E G ++L LL+ QP++EL     E
Sbjct:    5 RFFIIKSLNYKNLAVSVKQGKWATHRSHKTSLNAAFHQCSKVIFFFSVNESKHFQGCALMMSTIDD-KANVVEGNVRSWTGQFQVRWLHVCELPFRTVAHLQNPLNGNMPVIRSRDCQELTRELGVQMLVLLYRQPKVELQDAAME 149          
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Match: A0A2I4GVF0_JUGRE (30-kDa cleavage and polyadenylation specificity factor 30-like n=5 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4GVF0_JUGRE)

HSP 1 Score: 97.1 bits (240), Expect = 1.870e-19
Identity = 61/161 (37.89%), Postives = 90/161 (55.90%), Query Frame = 0
Query:    9 LTDPDVEAAVPVKEGSKARFFVLRSLNHDNLAVSTVQNKWYVRRHSINPFNLAFEQGK-VFFFFSVNYSVNFQGCAEMTSRIPDM----EMRTAEVTV---MEFSVKWLRLCELPYSSANQIKNSFNEDNLVGRSRDGMELNYESGRKLLKLLWGQPEIEL 161
            L +    +A+P+ +G  +R+F+++S N +NL +S  Q  W  +R +    N AF+  + V   FSVN + NFQGCA+MTS+I         + A  T      FSVKWL+LCEL +     ++N FNE+  V  SRD  EL    G +L  LL+ +P+ EL
Sbjct:  242 LPNQTSRSALPLPQGI-SRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRNFQGCAKMTSKIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFQKTRHLRNPFNENLPVKISRDCQELEPSVGEQLASLLYLEPDSEL 401          
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Match: A0A4V4H3J3_MUSBA (Uncharacterized protein n=3 Tax=Musa TaxID=4640 RepID=A0A4V4H3J3_MUSBA)

HSP 1 Score: 96.7 bits (239), Expect = 2.550e-19
Identity = 59/161 (36.65%), Postives = 93/161 (57.76%), Query Frame = 0
Query:    9 LTDPDVEAAVPVKEGSKARFFVLRSLNHDNLAVSTVQNKWYVRRHSINPFNLAFEQGK-VFFFFSVNYSVNFQGCAEMTSRIPDM----EMRTAEVTV---MEFSVKWLRLCELPYSSANQIKNSFNEDNLVGRSRDGMELNYESGRKLLKLLWGQPEIEL 161
            L++  V  A P+ +G ++R+F+++S N +NL +S  Q  W  +R +    N AFE  + V   FS+N + +FQGCA+MTSRI         + +  T      FSVKWL+LCEL ++  + ++N +N++  V  SRD  EL    G +L  LL+ +P+ EL
Sbjct:  257 LSNQTVRTASPLPQG-QSRYFIVKSCNRENLEISVQQGMWATQRSNEAKLNEAFESTENVILIFSINKTRHFQGCAKMTSRIGGFVGGGNWKYSHGTAHYGRNFSVKWLKLCELSFNKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSEL 416          
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Match: A0A835QJ41_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QJ41_VANPL)

HSP 1 Score: 96.7 bits (239), Expect = 2.550e-19
Identity = 60/161 (37.27%), Postives = 91/161 (56.52%), Query Frame = 0
Query:    9 LTDPDVEAAVPVKEGSKARFFVLRSLNHDNLAVSTVQNKWYVRRHSINPFNLAFEQGK-VFFFFSVNYSVNFQGCAEMTSRIPDM----EMRTAEVTV---MEFSVKWLRLCELPYSSANQIKNSFNEDNLVGRSRDGMELNYESGRKLLKLLWGQPEIEL 161
            L   ++  A P+  G ++RFF+++S N +NL +S  Q  W  +R +    N AFE  + V   FS+N + +FQGCA+MTS+I         + A  T      FSVKWL+LCEL ++  + ++N FN++  V  SRD  EL    G +L  LL+ +P+ EL
Sbjct:  245 LPSENIRTASPLPPG-QSRFFIVKSCNRENLEISVQQGVWATQRSNEAKLNEAFESTENVILIFSINRTRHFQGCAKMTSKIGGFVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFNKTHHLRNPFNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSEL 404          
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Match: A0A6V7PMN7_ANACO (Uncharacterized protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7PMN7_ANACO)

HSP 1 Score: 95.9 bits (237), Expect = 3.380e-19
Identity = 59/166 (35.54%), Postives = 94/166 (56.63%), Query Frame = 0
Query:    9 LTDPDVEAAVPVKEGSKARFFVLRSLNHDNLAVSTVQNKWYVRRHSINPFNLAFEQGK-VFFFFSVNYSVNFQGCAEMTSRIPDM----EMRTAEVTV---MEFSVKWLRLCELPYSSANQIKNSFNEDNLVGRSRDGMELNYESGRKLLKLLWGQPEIELPKQVA 166
            L +     A P+ +G ++R+F+++S N +NL +S  Q  W  +R +    N AFE  + V   FS+N + +FQGCA+MTS+I         ++A  T      FSVKWL+LCEL ++  + ++N +N++  V  SRD  EL    G +L  LL+ +P+ EL   +A
Sbjct:  260 LPNQATRTASPLPQG-QSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESSENVILIFSINRTRHFQGCAKMTSKIGGFIGGGNWKSAHGTAHYGRNFSVKWLKLCELSFNKTHHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELMAMLA 424          
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Match: A0A6A1WBG9_9ROSI (Cleavage and polyadenylation specificity factor CPSF30 n=1 Tax=Morella rubra TaxID=262757 RepID=A0A6A1WBG9_9ROSI)

HSP 1 Score: 96.3 bits (238), Expect = 3.480e-19
Identity = 60/153 (39.22%), Postives = 87/153 (56.86%), Query Frame = 0
Query:   17 AVPVKEGSKARFFVLRSLNHDNLAVSTVQNKWYVRRHSINPFNLAFEQGK-VFFFFSVNYSVNFQGCAEMTSRIPDM----EMRTAEVTV---MEFSVKWLRLCELPYSSANQIKNSFNEDNLVGRSRDGMELNYESGRKLLKLLWGQPEIEL 161
            A+P+ +G  +R+F+++S N +NL +S  Q  W  +R +    N AF+  + V   FSVN + +FQGCA+MTSRI         + A  T      FSVKWL+LCEL +     ++N FNE+  V  SRD  EL    G +L  LL+ +P+ EL
Sbjct:  251 AIPLPQGM-SRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILVFSVNRTQHFQGCAKMTSRIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPFNENLPVKISRDCQELEPSVGEQLASLLYLEPDSEL 402          
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Match: A0A2I4F8W7_JUGRE (30-kDa cleavage and polyadenylation specificity factor 30-like n=6 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4F8W7_JUGRE)

HSP 1 Score: 96.3 bits (238), Expect = 3.480e-19
Identity = 60/153 (39.22%), Postives = 88/153 (57.52%), Query Frame = 0
Query:   17 AVPVKEGSKARFFVLRSLNHDNLAVSTVQNKWYVRRHSINPFNLAFEQGK-VFFFFSVNYSVNFQGCAEMTSRIPDM----EMRTAEVTV---MEFSVKWLRLCELPYSSANQIKNSFNEDNLVGRSRDGMELNYESGRKLLKLLWGQPEIEL 161
            A+P+ +G  +R+F+++S N +NL +S  Q  W  +R +    N AF+  + V   FSVN + +FQGCA+MTSRI         + A  T      FSVKWL+LCEL + +   ++N FNE+  V  SRD  EL    G +L  LL+ +P+ EL
Sbjct:  251 AIPLPQGI-SRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSAENVILIFSVNRTRHFQGCAKMTSRIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFHNTRHLRNPFNENLPVKISRDCQELEPSVGEQLASLLYLEPDSEL 402          
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Match: UPI000901FC41 (30-kDa cleavage and polyadenylation specificity factor 30-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000901FC41)

HSP 1 Score: 95.9 bits (237), Expect = 4.660e-19
Identity = 60/155 (38.71%), Postives = 89/155 (57.42%), Query Frame = 0
Query:   16 AAVPVKEGSKARFFVLRSLNHDNLAVSTVQNKWYVRRHSINPFNLAFEQGK-VFFFFSVNYSVNFQGCAEMTSRIPDM--------EMRTAEVTVMEFSVKWLRLCELPYSSANQIKNSFNEDNLVGRSRDGMELNYESGRKLLKLLWGQPEIEL 161
            +A+P+ +G+ +R+F+++S N +NL +S  Q  W  +R +    N AF+  + V   FSVN + +FQGCA+MTSRI           E  TA      FSVKWL+LCEL +     ++N +NE+  V  SRD  EL    G +L  LL+ +P+ EL
Sbjct:  249 SAIPLPQGT-SRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDSMENVILIFSVNRTRHFQGCAKMTSRIGGATKGGNWKHEHGTAHYG-RNFSVKWLKLCELSFQKTRHLRNPYNENLPVKISRDCQELEASVGEQLASLLYLEPDSEL 401          
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Match: A0A7J7CQP0_TRIWF (30-kDa cleavage and polyadenylation specificity factor 30 n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CQP0_TRIWF)

HSP 1 Score: 95.9 bits (237), Expect = 4.700e-19
Identity = 58/153 (37.91%), Postives = 89/153 (58.17%), Query Frame = 0
Query:   17 AVPVKEGSKARFFVLRSLNHDNLAVSTVQNKWYVRRHSINPFNLAFEQGK-VFFFFSVNYSVNFQGCAEMTSRIPDM----EMRTAEVTV---MEFSVKWLRLCELPYSSANQIKNSFNEDNLVGRSRDGMELNYESGRKLLKLLWGQPEIEL 161
            A+P+ +G  +R+F+++S N +NL +S  Q  W  +R + +  N AF+  + V   FSVN + NFQGCA+MT++I         + A  T      FSVKWL+LCEL ++    ++N +NE+  V  SRD  EL    G +L  LL+ +P+ EL
Sbjct:  256 ALPLPQGI-SRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSAENVILIFSVNRTRNFQGCAKMTTKIGGFVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFNKTRHLRNPYNENLPVKISRDCQELEPSVGEQLASLLYLEPDSEL 407          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10503.359.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL2_ECTSI1.740e-7252.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V1N4_9STRA8.530e-2745.21Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2I4GVF0_JUGRE1.870e-1937.8930-kDa cleavage and polyadenylation specificity fa... [more]
A0A4V4H3J3_MUSBA2.550e-1936.65Uncharacterized protein n=3 Tax=Musa TaxID=4640 Re... [more]
A0A835QJ41_VANPL2.550e-1937.27Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]
A0A6V7PMN7_ANACO3.380e-1935.54Uncharacterized protein n=1 Tax=Ananas comosus var... [more]
A0A6A1WBG9_9ROSI3.480e-1939.22Cleavage and polyadenylation specificity factor CP... [more]
A0A2I4F8W7_JUGRE3.480e-1939.2230-kDa cleavage and polyadenylation specificity fa... [more]
UPI000901FC414.660e-1938.7130-kDa cleavage and polyadenylation specificity fa... [more]
A0A7J7CQP0_TRIWF4.700e-1937.9130-kDa cleavage and polyadenylation specificity fa... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.590.10coord: 26..170
e-value: 1.0E-31
score: 111.6
NoneNo IPR availablePANTHERPTHR12357YTH YT521-B HOMOLOGY DOMAIN-CONTAININGcoord: 22..185
NoneNo IPR availablePANTHERPTHR12357:SF3YTH DOMAIN-CONTAINING PROTEIN 1coord: 22..185
IPR007275YTH domainPFAMPF04146YTHcoord: 26..153
e-value: 1.5E-26
score: 93.3
IPR007275YTH domainPROSITEPS50882YTHcoord: 26..153
score: 25.568

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10503contigS-dermatodea_contig10503:790..7822 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10503.359.1mRNA_S-dermatodea_contig10503.359.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10503 790..7822 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10503.359.1 ID=prot_S-dermatodea_contig10503.359.1|Name=mRNA_S-dermatodea_contig10503.359.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=235bp
SRFAGKDPLTDPDVEAAVPVKEGSKARFFVLRSLNHDNLAVSTVQNKWYV
RRHSINPFNLAFEQGKVFFFFSVNYSVNFQGCAEMTSRIPDMEMRTAEVT
VMEFSVKWLRLCELPYSSANQIKNSFNEDNLVGRSRDGMELNYESGRKLL
KLLWGQPEIELPKQVAEHAKTAAFSGVEVYRRPPPQPMGHTKMMRGSGEG
GTSGGLGGRNTLQLGPSQPQRPLGPPGFLFEIESQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007275YTH_domain