mRNA_S-dermatodea_contig10500.357.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig10500.357.1 vs. uniprot
Match: A0A6H5L688_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L688_9PHAE) HSP 1 Score: 506 bits (1303), Expect = 2.780e-160 Identity = 372/836 (44.50%), Postives = 433/836 (51.79%), Query Frame = 1
Query: 1 VSASIDEQRDMPAWVKEYASGLGKEIYVVSIDAFAGRGFSALVRELYEQHGVVLLGISEDRRVVLHPGAGYVITPGDLGFLVADDSEIAESIVKQAGAPLPSLPSKHI--TPRGSGEKGGLSGAIAAAAVAAG----------------GLIPRLEYKP---------------------SKPETKPNRSIRCDAGSDRGVNRKGKPARR----INRPPSAPSP---IDSRKGMLALDATVESTRGGGGS--------------------SKFGAGGEEG---NDFGEYIVLVTPTLADVSTLVEALEAPQVPGMECRVVCPLYEWNQEQDEEEMCRLRTFPQVRLIVGPPSEMSLQAAGANRARMVVVRAGKSFAEQESSDADAETIGQIVEVHAAAGSNIRTIVELNDMTYGNHYEMLVDRLRDSAL-------------------------------QIKTHAHSVSKSTNHRPPEYTRPFDYTVSGQSLASYERKKDTL------------WNRLSN--LSRRKSSTDTYDEHPGATGHLSTVSAGDAGSS------GDLDGVSMMASATSQPGGTRGRIHWTLSKAFASGAIVPSSLPEMLLCQAYYNPAIIMIVEALLDPKAQQD------------NNQEGTRETFPEDDSDEPELPG-REGGEGRASFLAQIAAPKKFFTKAMLSGTRPN---FQELMNFMLAEYDALPFGLLRHGTGQAT--PVAEAPSKFVHCCPPPKQKVMPLDKVFLLVPNLESWERLQLDSP---------------------TVRPRSARIPAHRMTHNSHAQRGFPPAPPSVPYDDRGFPI 2031
VSASIDEQ+DMPAWVKEYASGLGKEIYVVSI AFAGRGFS LVREL+EQHGV+LLGISEDRRVVLHPGA YVITP DLGFLVADD+++AESIV+QA L P K P S +KG + G A G G++PRL S P P+ + A G+ + ++ PS SP I+SR A + ST GG G SK G + D G Y+VLVTPTLA VS LVEA EAPQVP M VVCPLY+WNQE+D+EE+ RLR FPQVRL++G S SL+ AGA+ ARMVVVRAGKSF EQ +SDADAE+IGQ+VEV A AG +R IVELNDMTYGNHYE+LVD LR S ++H++ P T D +S ++AS + D W R + L + Y E GA S S GD S+ G G RGR HWTL+K ASGAIVPSSLPE LLCQA+YNPAIIMIVEALLDPKAQ N +EG D D + G R+GGE + + A ++ A G RP LMNFML EYDALPFGLLRHG + V E P KFVHCCP P QKVMPLDKVFLL PNL+SWER+QLDSP + P P T +S +RGFPP PS DR FP+
Sbjct: 376 VSASIDEQQDMPAWVKEYASGLGKEIYVVSIGAFAGRGFSELVRELFEQHGVILLGISEDRRVVLHPGACYVITPADLGFLVADDADVAESIVEQAVGALLPFPEKSEPQAPLSSAQKGSVGGREGAGVKGRGSTTATAMALTADARTAGVLPRLGRTTKGVGGHSGSVGGGSRSGGKCRSFPLDPPDYGVGATAEMVAAARNTGESSAHQTGVLHLSPSPSSPWTVINSRGAETAREDPQISTVGGRGEGGXXXXXXXXXXXXXXASSPSKMAIGNKRSPNNGDGGGYMVLVTPTLAQVSMLVEAFEAPQVPKMGFVVVCPLYDWNQERDQEEIRRLRAFPQVRLVIGGASRASLKEAGASSARMVVVRAGKSFPEQGASDADAESIGQLVEVTAVAGLKVRAIVELNDMTYGNHYEILVDLLRSSRSLPLSPSLAAAPLPLAAGDCGRPDTVSATGDRSYQSHSNRNVHYNGGSPSSTTGALDNVLSATAVASMHKNADARGGEGAGQRLRGWWRRWRHRHLGCDDDGSSRYSEGRGA----SRCSEGDRSSAIPSVSGGXXXXXXXXXXXARARVGRRGRAHWTLTKGVASGAIVPSSLPETLLCQAFYNPAIIMIVEALLDPKAQVYSKARRRPGRHPWNEREGAAAPSQVSDEDGGDNDGCRDGGECEGE--SGVGAREEGRDGADGGGRRPTSGGVGALMNFMLGEYDALPFGLLRHGKAGSPCGSVGEVP-KFVHCCPDPGQKVMPLDKVFLLAPNLDSWERMQLDSPPPALLPAAGNNSRFSPGDRLSSTTPDLTPPPIGANTTDSPNKRGFPPETPSAVTGDRRFPV 1204
BLAST of mRNA_S-dermatodea_contig10500.357.1 vs. uniprot
Match: D8LPX0_ECTSI (Cation chanel protein, possibly calcium-activated BK potassium channel, alpha subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX0_ECTSI) HSP 1 Score: 418 bits (1075), Expect = 9.220e-128 Identity = 330/776 (42.53%), Postives = 380/776 (48.97%), Query Frame = 1
Query: 1 VSASIDEQRDMPAWVKEYASGLGKEIYVVSIDAFAGRGFSALVRELYEQHGVVLLGISEDRRVVLHPGAGYVITPGDLGFLVADDSEIAESIVKQAGAPLPSLPSKHITP------------RGSGEKG-GLSGAIAAAAVAAG---GLIPRLEYKPSKPETKPNRSIRCDAGSDRG------VNRKGKPARRINRPPSAPSPIDSRKGMLALDATVESTRGGGGSSKFGAGGEEGNDF---GEYIVLVTPTLADVSTLVEALEAPQVPGMECRVVCPLYEWNQEQDEEEMCRLRTFPQVRLIVGPPSEMSLQAAGANRARMVVVRAGKSFAEQESSDADAETIGQIVEVHAAAGSNIRTIVELNDMTYGNHYEMLVDRLRDS---------ALQIKTHA--------------------HSVSKSTNH----RPPEYTRPFDYTVSGQSLASYERKKDT-----LWNRLSNLSRR---------KSSTDTYDEHPGATGHLSTVSAGDAGSS------GDLDGVSMMASATSQPGGTRGRIHWTLSKAFASGAIVPSSLPEMLLCQAYYNPAIIMIVEALLDPKAQQDNNQEGTRETFPEDDSDEPELPGREGGEGRASFLAQIAAPKKFFTKAMLSGTRPNFQELMNFMLAEYDALPFGLLRHGTGQATPVAEAPSKFVHCCPPPKQKVMPLDKVFLLVPNLESWERLQLDSP---------------------TVRPRSARIPAHRMTHNSHAQRGFPPAPPSVPYDDRGFPI 2031
VSASIDEQ+DMPAW+KEYASGLGKEIYVVSI AFAGRGFS LVREL+EQHGV+LLGISEDRRVVLHPGAGYVIT DLGFLVADD+++AESIV+QA L P K + G+G KG G + A A A A G G++PRL + + + +GS G N +G R + S G SK G + + G YIVLVTPTLA VSTLVEA EAPQVP M VVCPLY+WNQE+D+EE+ RLR FPQVRL++G S SL+ AGA+ ARMVVV A AG ++R IVELNDMTYGNHYE+LVD LR S +L + + S SK H P + D +S ++AS + D RL++ RR + Y E GA S S GD S G G RGR HWTL+K ASGAIVPSSLPE LLCQA+YNPAIIMIVEALLDPKAQ + TR PGR R AAP Q LMNFML EYDALPFGLLRHG EA S P VFLL PNL+SWER+QLDSP + P P T NS +RGFPP P DRGFP
Sbjct: 441 VSASIDEQQDMPAWIKEYASGLGKEIYVVSIGAFAGRGFSELVRELFEQHGVILLGISEDRRVVLHPGAGYVITSADLGFLVADDADVAESIVEQAVGALLPFPEKSVPQPPPSSALKGSVREGAGVKGHGSTAATAMALTADGRTAGVLPRLG--------RTTKGVGGRSGSGGGGSRGDVTNSRGAETAREDLQISTVGGRGEGGXXXXXXXXXXXXXGASSPSKMAIGNKRSPNNAGGGGYIVLVTPTLAQVSTLVEAFEAPQVPTMGFVVVCPLYDWNQERDQEEIRRLREFPQVRLVIGAASRASLREAGASSARMVVVT-------------------------AVAGLDVRAIVELNDMTYGNHYEILVDLLRSSRSLPPPLSPSLAVAPLSLAAGDCGRPDTVSATGDRSYQSHSKRNVHYNGGSPSSTSGALDNVLSATAVASMHKNADAQGGEGAGQRLTSWWRRWRHRQLGCDDDRSSRYSEGRGA----SRRSEGDRNSGIPSVSGGXXXXXXXXXXXXRAREGRRGRAHWTLTKGVASGAIVPSSLPETLLCQAFYNPAIIMIVEALLDPKAQ---DYRKTRRR-----------PGRHSWNERDG----AAAPS---------------QALMNFMLGEYDALPFGLLRHG--------EAGS--------------PCGSVFLLAPNLDSWERMQLDSPPPASLPAAGTNSRFPPGDRLSSTTPDLTPPPIGATTANSPNKRGFPPETPCAVLGDRGFPF 1124
BLAST of mRNA_S-dermatodea_contig10500.357.1 vs. uniprot
Match: A0A835YS46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS46_9STRA) HSP 1 Score: 219 bits (558), Expect = 9.800e-57 Identity = 195/637 (30.61%), Postives = 275/637 (43.17%), Query Frame = 1
Query: 40 WVKEYASGLGKEIYVVSIDAFAGRGFSALVRELYEQHGVVLLGISEDRRVVLHPGAGYVITPGDLGFLVADDSEIAESIVKQAGAPLPSLPSKHITPRGSGEKGGLSGAIAAAAVAAGGLIPRLEYKPSKPETKPNRSIRCDAGSDRGVNRKGKPARRINRPPSAPSPIDSRKGMLALDATVESTRGGGGSSKFGAGGEEGNDFGEYIVLVTPTLADVSTLVEALEAPQVPGMECRVVCPLYEWNQEQDEEEMCRLRTFPQVR---LIVGPPSEMSLQAAGANRARMVVVRAGKSFAEQESSDADAETIGQIVEVHAAAGSNIRTIVELNDMTYGNHYEMLVDRLRDSALQIKTHAHSVSKSTNHRPPEYTRPFDYTVSGQSLASYERKKDTLWNRLSNLSRRKSSTDTYDEHPGATGHLSTVSAGDAGSSGDLDGVSMMASATSQPGGTRGRIHWTLSKAFASGAIVPSSLPEMLLCQAYYNPAIIMIVEALLDPKAQQDNNQEGTRETFPEDDSDEPELPGREGGEGRASFLAQIAAPKKFFTK----------AMLSGT-----RPNFQELMNFMLAEYDALPFGLLRHGTGQATPVAEAPSKFVHCCPPPKQKVMPLDKVFLLVPNLESWERL 1896
W EY G GKE+Y V++ F G SA+ ELY +HGV+LLG+ RV++ P + I GD+G ++ADD + AE V A ++AA+AA G TK +S+ + G +R +RP S++G G+ + G +IV+VTPTLAD++TL E L +PQ E VVCPL +WN+EQD+ E+ +L R L+ G E +L A A +V++++G S Q + ++DAETI Q+VEV A G + R IVEL DMT G YE+L+ ++ + T + + R P L ++ +HP G +HWTLS FASGAIVPS+ E LLCQ++YNP II VEALL G R EL G G ++FLAQ+ P FFT+ A+L+G P+FQ L+ +M+ Y ALP GLLR + P ++V CCP V D+ F+LVP+L+SW R+
Sbjct: 571 WRAEYTVGQGKEMYTVALPDFGGAAVSAVACELYCRHGVLLLGLCRRDRVLMGPTSAQRIVAGDMGLVIADDLQGAEGAV----------------------------AASSAALAANGAA----------ATKHRQSLLTAIAKFQVP--WGHQGKRTSRP-------SSQRGXXXXXXXXX-------XXXXXXXGDLAD--GSHIVVVTPTLADMATLAELLLSPQAFQRELVVVCPLPDWNREQDDAEVLKLDNLLGERGWRLVHGRMDEDALHQADLRGAWVVLLKSGCSEPGQSTEESDAETISQLVEVVAHVGGDKRVIVELQDMTCGAQYEILMSNVKVISNLAGTLKGLRTTYGSWRTPPXXXXXXXXXXXXXXXXXXXXXXXXXXXAHGLPSPRNLARPPLQHPNGKGER--------------------------------HLHWTLSPGFASGAIVPSNFAETLLCQSFYNPEIIKAVEALLG----------GGR----------TELGSGRGRGGGSAFLAQVHPPAAFFTECRPDLSDIEAAVLAGMGGPGGAPDFQHLLRYMMRHYGALPIGLLRPEQRASEPGGAPSPRYVVCCPDRGAAVARADRAFVLVPSLDSWRRM 1099
BLAST of mRNA_S-dermatodea_contig10500.357.1 vs. uniprot
Match: A0A7S3D5A0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D5A0_9EUKA) HSP 1 Score: 65.5 bits (158), Expect = 2.900e-7 Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1
Query: 4 SASIDEQRDMPAWVKEYASGLGKEIYVVSIDAFAGRGFSALVRELYEQHGVVLLGISED------RRVVLHPGAGYVITPGDLGFLVADDSEIAESIVKQAGAP 297
S + + + W +EY+SGL +EIY V + F G + + +YE+ G++L + R VV+ P Y I GD+GF++A+DSE+ I+ A P
Sbjct: 494 SGDVPKSVQLDPWQQEYSSGLSQEIYHVDLAVFQGMTYKDALLSIYEKLGIMLFALEVKAKFGNVREVVIKPRMDYTIQKGDIGFVIAEDSEVT-FIIDSAAPP 596
BLAST of mRNA_S-dermatodea_contig10500.357.1 vs. uniprot
Match: A0A7S3D5B4_9EUKA (Hypothetical protein n=6 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D5B4_9EUKA) HSP 1 Score: 65.5 bits (158), Expect = 3.210e-7 Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1
Query: 4 SASIDEQRDMPAWVKEYASGLGKEIYVVSIDAFAGRGFSALVRELYEQHGVVLLGISED------RRVVLHPGAGYVITPGDLGFLVADDSEIAESIVKQAGAP 297
S + + + W +EY+SGL +EIY V + F G + + +YE+ G++L + R VV+ P Y I GD+GF++A+DSE+ I+ A P
Sbjct: 494 SGDVPKSVQLDPWQQEYSSGLSQEIYHVDLAVFQGMTYKDALLSIYEKLGIMLFALEVKAKFGNVREVVIKPRMDYTIQKGDIGFVIAEDSEVT-FIIDSAAPP 596
BLAST of mRNA_S-dermatodea_contig10500.357.1 vs. uniprot
Match: A0A7S3XV85_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XV85_HETAK) HSP 1 Score: 62.8 bits (151), Expect = 9.500e-7 Identity = 51/162 (31.48%), Postives = 71/162 (43.83%), Query Frame = 1
Query: 1414 FASGAIVPSSLPEMLLCQAYYNPAIIMIVEALLDPKAQQDNNQ-----------EGTRETFPEDDSDEPELPGREGGEGRASFLAQIAAPKKFFTKAMLSGTRPNFQELMNFMLAEYDALPFGLLRHGTGQATPVAEAPSKFVHCCPPPKQKVMPLDKVFLL 1866
+A+G +V L E+LLCQAY+NP +I IV LL Q+D N+ E + + ++E +G + RAS A P K T F + +L+EYDAL G R P A V CPP V P DK+F++
Sbjct: 97 YAAGGVVLGRLSELLLCQAYFNPHVIQIVNLLLSASYQRDKNKSVFLAQIILPKELVEDILKREQNEE-----NKGADKRASLSA---GPTKTLT----------FGAVFKHLLSEYDALALGFFR-------PAMVAAPGHVATCPPSAAPVRPGDKIFII 233 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10500.357.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10500.357.1 >prot_S-dermatodea_contig10500.357.1 ID=prot_S-dermatodea_contig10500.357.1|Name=mRNA_S-dermatodea_contig10500.357.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=667bp MPAWVKEYASGLGKEIYVVSIDAFAGRGFSALVRELYEQHGVVLLGISEDback to top mRNA from alignment at S-dermatodea_contig10500:161..5393+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig10500.357.1 ID=mRNA_S-dermatodea_contig10500.357.1|Name=mRNA_S-dermatodea_contig10500.357.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5233bp|location=Sequence derived from alignment at S-dermatodea_contig10500:161..5393+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig10500:161..5393+ >mRNA_S-dermatodea_contig10500.357.1 ID=mRNA_S-dermatodea_contig10500.357.1|Name=mRNA_S-dermatodea_contig10500.357.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=4002bp|location=Sequence derived from alignment at S-dermatodea_contig10500:161..5393+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |