mRNA_S-dermatodea_contig10498.349.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10498.349.1
Unique NamemRNA_S-dermatodea_contig10498.349.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10498.349.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.280e-26
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    1 PLTWPLLLAGRRAVFESQEGGRVVWCGLALSFFLLCRAGELFAYDASGLVHKDSCLTRKDITFSLGNRTLAWQDREAADRVTFRFRGAKNDQNCNGTPVTRTRS 312
            PLTW +L  G   V E +EGGRV+W GLAL++FLLCRA ELFAY A GLVH + CLTR  +TF  G   +  +DR  AD V   F  +K DQN +G  +TR RS
Sbjct:  113 PLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAY-ADGLVHPEFCLTRNSLTFYRGTERVGIEDRALADSVQVDFIASKGDQNRDGRSITRGRS 215
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BLAST of mRNA_S-dermatodea_contig10498.349.1 vs. uniprot
Match: A0A6H5K312_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K312_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 8.150e-25
Identity = 53/101 (52.48%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:    1 PLTWPLLLAGRRAVFESQEGGRVVWCGLALSFFLLCRAGELFAYDASGLVHKDSCLTRKDITFSLGNRTLAWQDREAADRVTFRFRGAKNDQNCNGTPVTR 303
            PL+W +L AG+  V  S E G+++WCGLALS+ L+CRA E++A D SGLVH D CLTR D+ F  G   +AW DR  A RV   FR +K DQ   G  VTR
Sbjct:  440 PLSWDMLEAGKCVVENSGESGKLIWCGLALSYLLMCRASEIWA-DDSGLVHSDFCLTRGDLGFFCGPVRVAWADRRQASRVEVTFRASKADQKRLGATVTR 539
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BLAST of mRNA_S-dermatodea_contig10498.349.1 vs. uniprot
Match: A0A6H5KZQ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZQ1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 3.440e-22
Identity = 52/103 (50.49%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    1 PLTWPLLLAGRRAVFESQEGGRVVWCGLALSFFLLCRAGELFAYDASGLVHKDSCLTRKDITFSLGNRTLAWQDREAADRVTFRFRGAKNDQNCNGTPVTRTR 309
            PLT P+++AGR    ++     V W G+ALS+FLLCRA EL+AY  +GLVH D CLTR ++ F  G+  LAW +R  ADRV   FR +K DQ   G  VTR R
Sbjct:  114 PLTVPMIIAGRERA-QTDAFRLVTWMGIALSYFLLCRASELWAYH-NGLVHADFCLTRGNLVFFEGSCQLAWDERRRADRVEVTFRASKADQKRRGAIVTRER 214
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BLAST of mRNA_S-dermatodea_contig10498.349.1 vs. uniprot
Match: A0A6H5L127_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L127_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.340e-21
Identity = 50/101 (49.50%), Postives = 63/101 (62.38%), Query Frame = 1 
Query:    1 PLTWPLLLAGRRAVFESQEGGRVVWCGLALSFFLLCRAGELFAYDASGLVHKDSCLTRKDITFSLGNRTLAWQDREAADRVTFRFRGAKNDQNCNGTPVTR 303
            PLT P+++ GR    ++   G V W G+ALS+FLLCRA EL+AY  +GLVH D CLTR ++ F  G   LA  +R  ADRV   FR +K DQ   G  VTR
Sbjct:   64 PLTVPMIITGRERA-QTNAFGLVTWMGIALSYFLLCRASELWAYQ-NGLVHADFCLTRGNLVFFEGACRLARNERRRADRVEVTFRASKADQKRRGAVVTR 162
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BLAST of mRNA_S-dermatodea_contig10498.349.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 7.230e-13
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:    1 PLTWPLLLAGRRAVFESQEGGRVVWCGLALSFFLLCRAGELFAYDASGLVHKDSCLTRKDITFSLGNRTLA----WQDREAADRVTFRFRGAKND 273
            P++W +L +G R      EGGRV+W GLA+S+F +CR  E+FAY  +G +HK+  +TR ++ F  G + L     W+    ADRV   F  +K++
Sbjct:  121 PISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYG-NGKIHKEFGITRGNVAFWKGEQQLLTPALWR---CADRVEVLFEASKSN 211
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BLAST of mRNA_S-dermatodea_contig10498.349.1 vs. uniprot
Match: A0A835YIV1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIV1_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.030e-10
Identity = 32/69 (46.38%), Postives = 40/69 (57.97%), Query Frame = 1 
Query:   70 VWCGLALSFFLLCRAGELFAYDASGLVHKDSCLTRKDITFSLGNRTLAWQDREAADRVTFRFRGAKNDQ 276
            VW G+AL+FFLL RA E++AY + GLVH D C+   D+ F    R L       AD   F  RG+K DQ
Sbjct:    1 VWRGVALAFFLLLRASEIWAYHSDGLVHPDFCVQAGDVHFRRQGRPLPAAAGHTADEARFIIRGSKTDQ 69
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10498.349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KDK3_9PHAE1.280e-2653.85Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K312_9PHAE8.150e-2552.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZQ1_9PHAE3.440e-2250.49Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L127_9PHAE1.340e-2149.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDR9_9PHAE7.230e-1338.95Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A835YIV1_9STRA1.030e-1046.38Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10498contigS-dermatodea_contig10498:7616..7927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924159.7373211-CDS-S-dermatodea_contig10498:7615..79271622924159.7373211-CDS-S-dermatodea_contig10498:7615..7927Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10498 7616..7927 +
1694079058.420485-CDS-S-dermatodea_contig10498:7615..79271694079058.420485-CDS-S-dermatodea_contig10498:7615..7927Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10498 7616..7927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10498.349.1prot_S-dermatodea_contig10498.349.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10498 7616..7927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10498.349.1

>prot_S-dermatodea_contig10498.349.1 ID=prot_S-dermatodea_contig10498.349.1|Name=mRNA_S-dermatodea_contig10498.349.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
PLTWPLLLAGRRAVFESQEGGRVVWCGLALSFFLLCRAGELFAYDASGLV
HKDSCLTRKDITFSLGNRTLAWQDREAADRVTFRFRGAKNDQNCNGTPVT
RTRS
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mRNA from alignment at S-dermatodea_contig10498:7616..7927+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10498.349.1 ID=mRNA_S-dermatodea_contig10498.349.1|Name=mRNA_S-dermatodea_contig10498.349.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=312bp|location=Sequence derived from alignment at S-dermatodea_contig10498:7616..7927+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTTGACCTGGCCATTACTGCTGGCGGGACGCCGGGCAGTATTCGAGTC
GCAAGAAGGAGGGAGGGTCGTATGGTGCGGATTGGCGTTGTCGTTCTTTC
TGTTGTGCCGCGCGGGCGAGCTGTTCGCCTACGACGCGTCCGGCCTTGTG
CACAAAGATTCGTGTCTAACCCGAAAAGATATCACGTTTTCCCTGGGTAA
TCGGACACTGGCTTGGCAGGACCGCGAAGCGGCAGACCGAGTGACCTTCC
GGTTCAGAGGGGCGAAGAACGACCAGAACTGCAACGGAACGCCCGTGACC
CGCACCAGGTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10498:7616..7927+

>mRNA_S-dermatodea_contig10498.349.1 ID=mRNA_S-dermatodea_contig10498.349.1|Name=mRNA_S-dermatodea_contig10498.349.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig10498:7616..7927+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCTTTGACCTGGCCATTACTGCTGGCGGGACGCCGGGCAGTATTCGAGTC
GCAAGAAGGAGGGAGGGTCGTATGGTGCGGATTGGCGTTGTCGTTCTTTC
TGTTGTGCCGCGCGGGCGAGCTGTTCGCCTACGACGCGTCCGGCCTTGTG
CACAAAGATTCGTGTCTAACCCGAAAAGATATCACGTTTTCCCTGGGTAA
TCGGACACTGGCTTGGCAGGACCGCGAAGCGGCAGACCGAGTGACCTTCC
GGTTCAGAGGGGCGAAGAACGACCAGAACTGCAACGGAACGCCCGTGACC
CGCACCAGGTCGCCTTTGACCTGGCCATTACTGCTGGCGGGACGCCGGGC
AGTATTCGAGTCGCAAGAAGGAGGGAGGGTCGTATGGTGCGGATTGGCGT
TGTCGTTCTTTCTGTTGTGCCGCGCGGGCGAGCTGTTCGCCTACGACGCG
TCCGGCCTTGTGCACAAAGATTCGTGTCTAACCCGAAAAGATATCACGTT
TTCCCTGGGTAATCGGACACTGGCTTGGCAGGACCGCGAAGCGGCAGACC
GAGTGACCTTCCGGTTCAGAGGGGCGAAGAACGACCAGAACTGCAACGGA
ACGCCCGTGACCCGCACCAGGTCG
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