mRNA_S-dermatodea_contig10495.347.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10495.347.1
Unique NamemRNA_S-dermatodea_contig10495.347.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10495.347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10495contigS-dermatodea_contig10495:120..922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size803
Cds size624
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10495.347.1prot_S-dermatodea_contig10495.347.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10495 183..806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924159.5597587-UTR-S-dermatodea_contig10495:119..1821622924159.5597587-UTR-S-dermatodea_contig10495:119..182Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10495 120..182 +
1694079058.3043654-UTR-S-dermatodea_contig10495:119..1821694079058.3043654-UTR-S-dermatodea_contig10495:119..182Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10495 120..182 +
1622924159.5799048-UTR-S-dermatodea_contig10495:806..9221622924159.5799048-UTR-S-dermatodea_contig10495:806..922Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10495 807..922 +
1694079058.3199801-UTR-S-dermatodea_contig10495:806..9221694079058.3199801-UTR-S-dermatodea_contig10495:806..922Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10495 807..922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924159.5701773-CDS-S-dermatodea_contig10495:182..8061622924159.5701773-CDS-S-dermatodea_contig10495:182..806Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10495 183..806 +
1694079058.3119273-CDS-S-dermatodea_contig10495:182..8061694079058.3119273-CDS-S-dermatodea_contig10495:182..806Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10495 183..806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10495.347.1

>prot_S-dermatodea_contig10495.347.1 ID=prot_S-dermatodea_contig10495.347.1|Name=mRNA_S-dermatodea_contig10495.347.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=208bp
MIPWRSSVSRGVTTEGGLLSVRPCCLSRGCPRPTLYNTENREPPYKYSVS
HGMRTPAHAGKKHMLQTVYTLHQPCHLHALPAKHVYRMIHRTVYLCIAPF
ANTREHTPKGGDLSNWRACVHDMYLDDTCIPRQGADKASSSTYDTNKNAE
FRSDSVRQTDGLIYLFCNKKWHKLQVHVCCSVSPCLTRCGLSSSIMSMSY
MGARVSR*
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mRNA from alignment at S-dermatodea_contig10495:120..922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10495.347.1 ID=mRNA_S-dermatodea_contig10495.347.1|Name=mRNA_S-dermatodea_contig10495.347.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=803bp|location=Sequence derived from alignment at S-dermatodea_contig10495:120..922+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGTGGGTTCAGCAAAGAAAGCCTGCCGGCTTGGCACGAACATGACAATG
CTCAGCGAAATGTATGATACCATGGCGAAGCTCTGTCAGTAGGGGCGTTA
CCACGGAGGGGGGTTTGCTGTCGGTACGGCCATGCTGCCTTTCGCGTGGT
TGTCCCCGCCCGACGCTCTACAATACAGAAAATAGAGAACCGCCGTACAA
ATACAGTGTAAGCCATGGGATGAGGACACCTGCTCATGCAGGCAAAAAAC
ACATGTTGCAAACGGTTTATACTCTTCATCAGCCATGTCACCTACATGCA
CTTCCCGCCAAACATGTTTATCGTATGATACATAGGACCGTTTACTTATG
TATAGCGCCGTTCGCAAACACCAGAGAGCACACACCAAAGGGGGGGGACC
TGAGCAACTGGCGGGCGTGTGTGCATGATATGTACTTGGATGACACTTGT
ATCCCAAGGCAGGGCGCAGATAAAGCCAGCAGCAGTACCTACGATACCAA
TAAAAACGCTGAGTTCAGAAGTGACTCAGTCAGACAAACGGACGGTTTGA
TTTATTTATTTTGCAACAAAAAATGGCACAAGCTACAAGTACACGTCTGC
TGTTCTGTTTCCCCGTGTCTCACTCGTTGCGGCCTAAGTAGTTCAATAAT
GTCGATGTCATATATGGGTGCCCGCGTGTCACGATGACGTACACATCCGG
ACTTTTACGTAAAACCATACAGTTGTATATTCTGCGATATAGGGACACAT
GTTCAGTAAGCAGGCCACAGGAAGTGCGTTGTGGTCCGTACATACGCGCT
GCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10495:120..922+

>mRNA_S-dermatodea_contig10495.347.1 ID=mRNA_S-dermatodea_contig10495.347.1|Name=mRNA_S-dermatodea_contig10495.347.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at S-dermatodea_contig10495:120..922+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATACCATGGCGAAGCTCTGTCAGTAGGGGCGTTACCACGGAGGGGGG
TTTGCTGTCGGTACGGCCATGCTGCCTTTCGCGTGGTTGTCCCCGCCCGA
CGCTCTACAATACAGAAAATAGAGAACCGCCGTACAAATACAGTGTAAGC
CATGGGATGAGGACACCTGCTCATGCAGGCAAAAAACACATGTTGCAAAC
GGTTTATACTCTTCATCAGCCATGTCACCTACATGCACTTCCCGCCAAAC
ATGTTTATCGTATGATACATAGGACCGTTTACTTATGTATAGCGCCGTTC
GCAAACACCAGAGAGCACACACCAAAGGGGGGGGACCTGAGCAACTGGCG
GGCGTGTGTGCATGATATGTACTTGGATGACACTTGTATCCCAAGGCAGG
GCGCAGATAAAGCCAGCAGCAGTACCTACGATACCAATAAAAACGCTGAG
TTCAGAAGTGACTCAGTCAGACAAACGGACGGTTTGATTTATTTATTTTG
CAACAAAAAATGGCACAAGCTACAAGTACACGTCTGCTGTTCTGTTTCCC
CGTGTCTCACTCGTTGCGGCCTAAGTAGTTCAATAATGTCGATGTCATAT
ATGGGTGCCCGCGTGTCACGATGAATGATACCATGGCGAAGCTCTGTCAG
TAGGGGCGTTACCACGGAGGGGGGTTTGCTGTCGGTACGGCCATGCTGCC
TTTCGCGTGGTTGTCCCCGCCCGACGCTCTACAATACAGAAAATAGAGAA
CCGCCGTACAAATACAGTGTAAGCCATGGGATGAGGACACCTGCTCATGC
AGGCAAAAAACACATGTTGCAAACGGTTTATACTCTTCATCAGCCATGTC
ACCTACATGCACTTCCCGCCAAACATGTTTATCGTATGATACATAGGACC
GTTTACTTATGTATAGCGCCGTTCGCAAACACCAGAGAGCACACACCAAA
GGGGGGGGACCTGAGCAACTGGCGGGCGTGTGTGCATGATATGTACTTGG
ATGACACTTGTATCCCAAGGCAGGGCGCAGATAAAGCCAGCAGCAGTACC
TACGATACCAATAAAAACGCTGAGTTCAGAAGTGACTCAGTCAGACAAAC
GGACGGTTTGATTTATTTATTTTGCAACAAAAAATGGCACAAGCTACAAG
TACACGTCTGCTGTTCTGTTTCCCCGTGTCTCACTCGTTGCGGCCTAAGT
AGTTCAATAATGTCGATGTCATATATGGGTGCCCGCGTGTCACGATGA
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