prot_S-dermatodea_contig10490.345.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig10490.345.1
Unique Nameprot_S-dermatodea_contig10490.345.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length121
Homology
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Match: D8LRU5_ECTSI (Novel Sm-like protein with long N-and C-terminal domains n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRU5_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 2.130e-40
Identity = 76/94 (80.85%), Postives = 81/94 (86.17%), Query Frame = 0
Query:   19 MAEDAGSGVPLVGSRISLISKKDIRYEGVLYNINTNDASLALQNVRSFGTEGRVKGHVIPPSTDTFDFVCFRGQDIKDLHVHDVETDEETSQPP 112
            MAE+ GSGVPLVGSRISLISKK+IRYEG LYNINT+DASLALQNVRSFGTEGRV+GHVIPPS    DFVCFRGQDI DLHVHD E DE +   P
Sbjct:    1 MAEE-GSGVPLVGSRISLISKKNIRYEGTLYNINTSDASLALQNVRSFGTEGRVEGHVIPPSQVLHDFVCFRGQDIMDLHVHDAEADEGSQAAP 93          
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Match: A0A7S2JUH1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUH1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.300e-26
Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 0
Query:   28 PLVGSRISLISKKDIRYEGVLYNINTNDASLALQNVRSFGTEGRVK-----GHVIPPSTDTFDFVCFRGQDIKDLHVHDVETD----EETSQPPAHLAAAA 119
            PL+GSRISLISKKDIRYEG LY+IN  DA++ALQNVRSFGTEGR K     G  IPP      ++ FRG DIKDLHVH+  +D    E+    PA L+A A
Sbjct:    5 PLLGSRISLISKKDIRYEGTLYSINETDATVALQNVRSFGTEGREKRDDAAGTFIPPQATVHPYLLFRGMDIKDLHVHEKASDAAKKEDVPSDPAILSATA 105          
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Match: A0A7S1G7E6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G7E6_9STRA)

HSP 1 Score: 103 bits (258), Expect = 5.600e-26
Identity = 58/102 (56.86%), Postives = 73/102 (71.57%), Query Frame = 0
Query:   18 AMAEDAGSGVPLVGSRISLISKKDIRYEGVLYNINTNDASLALQNVRSFGTEGRVKGHV-IPPSTDTFDFVCFRGQDIKDLHVHDVETDEETSQPPAHLAAA 118
            AMA DAG+GVP +GS+ISLIS  +IRYEG L+NIN  ++++ALQNVRSFGTEGR +G   IP   D ++++ FRG DIKDL V   E +   S  PA  AAA
Sbjct:   38 AMA-DAGAGVPYLGSKISLISNSEIRYEGTLFNINPQESTVALQNVRSFGTEGRRQGGPQIPAQADVYEYIIFRGADIKDLRVL-TEAERVASAAPADAAAA 137          
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Match: B7FYW7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYW7_PHATC)

HSP 1 Score: 103 bits (256), Expect = 2.070e-24
Identity = 53/89 (59.55%), Postives = 63/89 (70.79%), Query Frame = 0
Query:   28 PLVGSRISLISKKDIRYEGVLYNINTNDASLALQNVRSFGTEGRVKGH----VIPPSTDTFDFVCFRGQDIKDLHVHDVETDEETSQPP 112
            PL+G  ISLISKK+IRYEGVLY+IN  +A++ALQNVRSFGTEGR         + PS D   F+ FRGQDIKDLHVH+   +  T  PP
Sbjct:    5 PLIGKNISLISKKNIRYEGVLYSINEQNATVALQNVRSFGTEGREATEQWLAFVGPSDDVHPFLMFRGQDIKDLHVHEAGAEAVTPAPP 93          
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Match: A0A7S0SSV8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SSV8_9CHLO)

HSP 1 Score: 100 bits (248), Expect = 2.070e-24
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 0
Query:   28 PLVGSRISLISKKDIRYEGVLYNINTNDASLALQNVRSFGTEGRV-KGHVIPPSTDTFDFVCFRGQDIKDL 97
            P +GS+ISLISK +IRYEG+LY I+T D+SLALQNVRSFGTEGR  KG  IPPS + +D++ FRG DIKD+
Sbjct:    4 PYIGSKISLISKSEIRYEGILYTIDTKDSSLALQNVRSFGTEGRKEKGPQIPPSVEIYDYIIFRGTDIKDI 74          
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Match: A0A8C6WMA2_9GOBI (LSM14 domain-containing protein n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6WMA2_9GOBI)

HSP 1 Score: 97.8 bits (242), Expect = 4.600e-24
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 0
Query:   23 AGSGVPLVGSRISLISKKDIRYEGVLYNINTNDASLALQNVRSFGTEGRVKGHVIPPSTDTFDFVCFRGQDIKDLHVHDVETDEETSQPPA 113
            +G G P +GS+ISL+SK +IRYEG+LY I+T ++++AL  VRSFGTE R     IPP  DTF+++ FRG DIKDL V +      + Q PA
Sbjct:    2 SGGGTPYLGSKISLVSKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIPPRDDTFEYIIFRGSDIKDLTVCEPPKSASSLQDPA 92          
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Match: A0A7S2C1P4_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C1P4_9EUKA)

HSP 1 Score: 103 bits (256), Expect = 4.870e-24
Identity = 52/91 (57.14%), Postives = 67/91 (73.63%), Query Frame = 0
Query:   23 AGSGVPLVGSRISLISKKDIRYEGVLYNINTNDASLALQNVRSFGTEGRVKGHVIPPSTDTFDFVCFRGQDIKDLHVHDVETDEETSQPPA 113
            +G  VP +GSRI LISK +IRYEG LY I+T ++++ALQNVRSFGTE R + + IPPS + FD++ FRG DIKDLHV +  T+     PPA
Sbjct:   22 SGQPVPYLGSRIVLISKSEIRYEGTLYTIDTTNSTVALQNVRSFGTENRKEDNPIPPSAEIFDYIIFRGTDIKDLHVCEQPTEPA---PPA 109          
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Match: A0A3M6V7K0_9STRA (FFD domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V7K0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.480e-24
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 0
Query:   26 GVPLVGSRISLISKKDIRYEGVLYNINTNDASLALQNVRSFGTEGRVKGHVIPPSTDTFDFVCFRGQDIKDLHVHDVETDEETSQPPAHLAAAAS 120
            G+P +GSRISL+SK DIRYEG L+NI+T  +++ALQNVRSFGTEGR   HV PPS+    +  F+  +IKDLHV +     E SQPP    + AS
Sbjct:   20 GIPYLGSRISLVSKTDIRYEGFLFNIDTRQSTVALQNVRSFGTEGRRAEHV-PPSSHVLQYATFKASEIKDLHVCEAAPSSEASQPPQPSVSQAS 113          
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Match: T1FY03_HELRO (LSM14 domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FY03_HELRO)

HSP 1 Score: 96.7 bits (239), Expect = 8.850e-24
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 0
Query:   27 VPLVGSRISLISKKDIRYEGVLYNINTNDASLALQNVRSFGTEGRVKGHVIPPSTDTFDFVCFRGQDIKDLHVHDVETDEETSQPPA 113
            +P +GS+ISLISK +IRYEGVLY+I+ N++++AL  VRSFGTE R   H + P  + F+++ FRG DIKDLHV D  T++ T Q PA
Sbjct:    5 IPYLGSKISLISKAEIRYEGVLYSIDANESTVALAKVRSFGTEDRHTDHPVQPRDEIFEYIIFRGTDIKDLHVCD--TNKLTPQDPA 89          
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Match: A0A836C876_9STRA (Scd6-like Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C876_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.670e-24
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 0
Query:   25 SGVPLVGSRISLISKKDIRYEGVLYNINTNDASLALQNVRSFGTEGRVKGHVIPPSTDTFDFVCFRGQDIKDLHVHDVETDEETSQPPAHLAA 117
            S   L+GSRISLISKKDIRYEG+LY I+  ++S+ LQ+V+S+GTE RV+G  +P S + F  + FRGQDIKDLHVHD  T  E  +P   + A
Sbjct:    2 SSQQLIGSRISLISKKDIRYEGILYGIDVENSSVTLQDVKSWGTENRVEGPQVPASDEIFGCIVFRGQDIKDLHVHD--TPAEAPKPAQPMVA 92          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10490.345.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRU5_ECTSI2.130e-4080.85Novel Sm-like protein with long N-and C-terminal d... [more]
A0A7S2JUH1_9STRA4.300e-2659.41Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1G7E6_9STRA5.600e-2656.86Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
B7FYW7_PHATC2.070e-2459.55Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S0SSV8_9CHLO2.070e-2467.61Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A8C6WMA2_9GOBI4.600e-2451.65LSM14 domain-containing protein n=1 Tax=Neogobius ... [more]
A0A7S2C1P4_9EUKA4.870e-2457.14Hypothetical protein (Fragment) n=2 Tax=Haptolina ... [more]
A0A3M6V7K0_9STRA8.480e-2454.74FFD domain-containing protein n=2 Tax=Peronospora ... [more]
T1FY03_HELRO8.850e-2455.17LSM14 domain-containing protein n=1 Tax=Helobdella... [more]
A0A836C876_9STRA9.670e-2455.91Scd6-like Sm domain-containing protein n=1 Tax=Tri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025609Lsm14-like, N-terminalSMARTSM01271LSM14_2coord: 24..119
e-value: 4.3E-37
score: 139.2
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 29..101
e-value: 3.1E-30
score: 104.1
NoneNo IPR availableGENE3D2.30.30.100coord: 19..105
e-value: 7.5E-33
score: 114.1
NoneNo IPR availablePANTHERPTHR13586:SF0TRAILER HITCH, ISOFORM Hcoord: 28..114
NoneNo IPR availablePANTHERPTHR13586SCD6 PROTEIN-RELATEDcoord: 28..114
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 29..102

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10490contigS-dermatodea_contig10490:2285..7873 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10490.345.1mRNA_S-dermatodea_contig10490.345.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig10490 2285..7873 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig10490.345.1 ID=prot_S-dermatodea_contig10490.345.1|Name=mRNA_S-dermatodea_contig10490.345.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=121bp
CCLLLSRLSPVYALGDRAMAEDAGSGVPLVGSRISLISKKDIRYEGVLYN
INTNDASLALQNVRSFGTEGRVKGHVIPPSTDTFDFVCFRGQDIKDLHVH
DVETDEETSQPPAHLAAAASV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025609Lsm14-like_N
IPR010920LSM_dom_sf