mRNA_S-dermatodea_contig1049.343.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Match: A0A6H5JQ98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ98_9PHAE) HSP 1 Score: 258 bits (659), Expect = 5.000e-81 Identity = 142/190 (74.74%), Postives = 161/190 (84.74%), Query Frame = 1
Query: 4 PSARDREIEDEKALGPDRVPENQKREVYERVRRAVDAKSGGFTNHKVGSSPWDKHEQKVLEDGLRYYPHERHSNMLIYIRIAASLPRKTVRDVAHHLRHMQAGCFAWNDAHRAKLDASA-GMH-PAKRHQPDPAAAAAMAAMHDHRMAALFAANVA-GMAPMHTLPGLAQGLAGPGGPGPHLKDEKVEVR 564
PSA+++E E E+ALG RVPENQKREVYERVRRA++AK+G T+HKVGSS WD++EQ+VLEDGLRYY H++HSNMLIYIRIAA LP+KTVRDVAHHLRHMQA D HRAK +A+A GM+ PAKRH PDP AAAAMAAMH+H MAA+FAAN A GMA M TLPGLA GLAGP GPGPHLKDEKVE R
Sbjct: 7 PSAKEKEKEVERALGVHRVPENQKREVYERVRRAMEAKNGVCTSHKVGSSSWDENEQRVLEDGLRYYSHDQHSNMLIYIRIAAGLPKKTVRDVAHHLRHMQARS---RDEHRAKPEAAAPGMNNPAKRHHPDPGAAAAMAAMHEHHMAAMFAANAAAGMAAMQTLPGLAPGLAGPSGPGPHLKDEKVEAR 193
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Match: D7FV74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV74_ECTSI) HSP 1 Score: 165 bits (417), Expect = 2.050e-49 Identity = 80/102 (78.43%), Postives = 94/102 (92.16%), Query Frame = 1
Query: 4 PSARDREIEDEKALGPDRVPENQKREVYERVRRAVDAKSGGFTNHKVGSSPWDKHEQKVLEDGLRYYPHERHSNMLIYIRIAASLPRKTVRDVAHHLRHMQA 309
PSA++++ ED +ALG RVPENQKREVYERVRRA++AK+G T+HKVGSS WDK+EQ+VLEDGLRYYPH++HSNMLIYIRIAA LP+KTVRDVAHHLRHMQA
Sbjct: 7 PSAKEKDKEDARALGVHRVPENQKREVYERVRRAMEAKTGVCTSHKVGSSSWDKNEQRVLEDGLRYYPHDQHSNMLIYIRIAAGLPKKTVRDVAHHLRHMQA 108
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Match: A0A836CD79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD79_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 5.600e-7 Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 121 GGFTNHKVGSSPWDKHEQKVLEDGLRYYPHERHSNMLIYIRIAASLPRKTVRDVA 285
G + G++ WD E+ L+ GL Y RHSNM +Y+++AA LP+KTVRDVA
Sbjct: 249 GAAMRYTSGAAAWDADERATLQRGLERYSPARHSNMTLYVKVAAMLPKKTVRDVA 303
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Match: A0A7J8QLE6_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A7J8QLE6_GOSRA) HSP 1 Score: 57.0 bits (136), Expect = 6.980e-7 Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 106 VDAKSGGFTNHKVGSS-PWDKHEQKVLEDGLRYYPHERHSNMLIYIRIAASLPRKTVRDVAHHLRHMQ 306
VD+ +G NH G + W EQ +LEDGL Y E N+L YI+IAASLP KTVRDVA R MQ
Sbjct: 62 VDSVAG--LNHDTGLAVEWSVDEQYILEDGLEKYKEE--PNILKYIKIAASLPEKTVRDVALRCRWMQ 125
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Match: A0A836CHT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHT8_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 7.350e-7 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1
Query: 133 NHKVGSSPWDKHEQKVLEDGLRYYPHERHSNMLIYIRIAASLPRKTV 273
+++ G + WD E + L +GLR YP + HSNM IY++IAA LPRKTV
Sbjct: 147 HYESGRATWDAEETRTLHEGLRRYPPQHHSNMTIYVKIAAMLPRKTV 193
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Match: A0A0D2W2C0_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2W2C0_GOSRA) HSP 1 Score: 57.0 bits (136), Expect = 1.140e-6 Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 106 VDAKSGGFTNHKVGSS-PWDKHEQKVLEDGLRYYPHERHSNMLIYIRIAASLPRKTVRDVAHHLRHMQ 306
VD+ +G NH G + W EQ +LEDGL Y E N+L YI+IAASLP KTVRDVA R MQ
Sbjct: 62 VDSVAG--LNHDTGLAVEWSVDEQYILEDGLEKYKEE--PNILKYIKIAASLPEKTVRDVALRCRWMQ 125
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Match: A0A7J9ASX4_9ROSI (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9ASX4_9ROSI) HSP 1 Score: 57.8 bits (138), Expect = 1.360e-6 Identity = 36/68 (52.94%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 106 VDAKSGGFTNHKVGSS-PWDKHEQKVLEDGLRYYPHERHSNMLIYIRIAASLPRKTVRDVAHHLRHMQ 306
VD+ +G NH+ G + W EQ +LEDGL Y E N+L YI+IAASLP KTVRDVA R MQ
Sbjct: 93 VDSVAG--LNHETGLAVEWSVDEQYILEDGLEKYKEE--PNILKYIKIAASLPEKTVRDVALRCRWMQ 156
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Match: A0A1U8KT25_GOSHI (uncharacterized protein LOC107920411 isoform X3 n=13 Tax=Gossypium TaxID=3633 RepID=A0A1U8KT25_GOSHI) HSP 1 Score: 57.0 bits (136), Expect = 2.190e-6 Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 106 VDAKSGGFTNHKVGSS-PWDKHEQKVLEDGLRYYPHERHSNMLIYIRIAASLPRKTVRDVAHHLRHMQ 306
VD+ +G NH G + W EQ +LEDGL Y E N+L YI+IAASLP KTVRDVA R MQ
Sbjct: 62 VDSVAG--LNHDTGLAVEWSVDEQYILEDGLEKYKEE--PNILKYIKIAASLPEKTVRDVALRCRWMQ 125
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Match: A0A1U8K554_GOSHI (uncharacterized protein LOC107913494 isoform X3 n=7 Tax=Gossypium TaxID=3633 RepID=A0A1U8K554_GOSHI) HSP 1 Score: 56.6 bits (135), Expect = 2.190e-6 Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 106 VDAKSGGFTNHKVGSS-PWDKHEQKVLEDGLRYYPHERHSNMLIYIRIAASLPRKTVRDVAHHLRHMQ 306
VD+ +G NH G + W EQ +LEDGL Y E N+L YI+IAASLP KTVRDVA R MQ
Sbjct: 62 VDSVAG--LNHDTGLAVEWSVDEQYILEDGLEKYNEE--PNILKYIKIAASLPEKTVRDVALRCRWMQ 125
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Match: A0A6P4NEC1_GOSAR (uncharacterized protein LOC108464187 isoform X1 n=18 Tax=Gossypium TaxID=3633 RepID=A0A6P4NEC1_GOSAR) HSP 1 Score: 57.0 bits (136), Expect = 2.280e-6 Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1
Query: 106 VDAKSGGFTNHKVGSS-PWDKHEQKVLEDGLRYYPHERHSNMLIYIRIAASLPRKTVRDVAHHLRHMQ 306
VD+ +G NH G + W EQ +LEDGL Y E N+L YI+IAASLP KTVRDVA R MQ
Sbjct: 62 VDSVAG--LNHDTGLAVEWSVDEQYILEDGLEKYKEE--PNILKYIKIAASLPEKTVRDVALRCRWMQ 125 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1049.343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1049.343.1 >prot_S-dermatodea_contig1049.343.1 ID=prot_S-dermatodea_contig1049.343.1|Name=mRNA_S-dermatodea_contig1049.343.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=188bp QPSARDREIEDEKALGPDRVPENQKREVYERVRRAVDAKSGGFTNHKVGSback to top mRNA from alignment at S-dermatodea_contig1049:20524..23163+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1049.343.1 ID=mRNA_S-dermatodea_contig1049.343.1|Name=mRNA_S-dermatodea_contig1049.343.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2640bp|location=Sequence derived from alignment at S-dermatodea_contig1049:20524..23163+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1049:20524..23163+ >mRNA_S-dermatodea_contig1049.343.1 ID=mRNA_S-dermatodea_contig1049.343.1|Name=mRNA_S-dermatodea_contig1049.343.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at S-dermatodea_contig1049:20524..23163+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |