mRNA_S-dermatodea_contig10488.339.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10488.339.1
Unique NamemRNA_S-dermatodea_contig10488.339.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10488.339.1 vs. uniprot
Match: A0A6H5JPC9_9PHAE (CitMHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPC9_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 1.320e-40
Identity = 95/178 (53.37%), Postives = 117/178 (65.73%), Query Frame = 1 
Query:    1 PFALRRRPSYHRLGTNAGGEQPDKLSEAAAPCIEMATIKTSEITGATAGKEAPSLTKITRSNCGTDSDPLEDVYDVAPKASVRVGDILVLSCDRDSMVRFQGSVGSRRRKGLKVLGVSTLKLA-RHGTIFLKLVLSRSSEFLGRTARAENPFFSARYGCSVVAFRLKGSTGGGVDLIG 531
            PFALRRR + ++   N  G   +  S A APCIEMAT++T+    A  G   P+   +        +    D++DVAP A VR GD+LVLSC   +MV  QGS  S R  GL VLG+STL+   R G++F +LVLSR+S FLGRTAR +  FFSARYGCSVVAFRLKGSTGGGVDL+G
Sbjct:  343 PFALRRRATAYQPLENEDGAVQNHGSGAGAPCIEMATLRTAG--AAVGGPGTPTSQSVGAFAAVDGATTTHDLHDVAPDACVRAGDVLVLSCGWSAMVDAQGSWFSAREPGLGVLGLSTLRPPPRPGSVFFELVLSRTSRFLGRTARRDEGFFSARYGCSVVAFRLKGSTGGGVDLLG 518
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10488.339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JPC9_9PHAE1.320e-4053.37CitMHS domain-containing protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10488contigS-dermatodea_contig10488:2790..3624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue4.2e-38
Seed eggNOG ortholog2880.D8LFP7
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008272,GO:0008509,GO:0015075,GO:0015103,GO:0015116,GO:0015318,GO:0015698,GO:0016020,GO:0022857,GO:0034220,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0072348,GO:0098656,GO:0098660,GO:0098661,GO:1901682,GO:1902358
EggNOG free text desc.potassium ion transport
EggNOG OGs2QPZM@2759,COG0471@1
Ec32 ortholog descriptionCitrate transporter-like domain
Ec32 orthologEc-01_001410.1
COG Functional cat.P
BiGG ReactioniRC1080.CRv4_Au5_s10_g542_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size835
Cds size834
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924159.1128845-CDS-S-dermatodea_contig10488:2789..36231622924159.1128845-CDS-S-dermatodea_contig10488:2789..3623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10488 2790..3623 +
1694079058.0440788-CDS-S-dermatodea_contig10488:2789..36231694079058.0440788-CDS-S-dermatodea_contig10488:2789..3623Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10488 2790..3623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10488.339.1prot_S-dermatodea_contig10488.339.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10488 2790..3623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10488.339.1

>prot_S-dermatodea_contig10488.339.1 ID=prot_S-dermatodea_contig10488.339.1|Name=mRNA_S-dermatodea_contig10488.339.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=278bp
PFALRRRPSYHRLGTNAGGEQPDKLSEAAAPCIEMATIKTSEITGATAGK
EAPSLTKITRSNCGTDSDPLEDVYDVAPKASVRVGDILVLSCDRDSMVRF
QGSVGSRRRKGLKVLGVSTLKLARHGTIFLKLVLSRSSEFLGRTARAENP
FFSARYGCSVVAFRLKGSTGGGVDLIGNGPGTPYRILIDDSRCPTDLDSA
TACLSTCGRDSTVAAPTNSLDGVDEVLVVSKDDPPKSVRSPLHSALPTPL
LSSPGDDGSPAVGVSPPGEAALLPRRRR
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mRNA from alignment at S-dermatodea_contig10488:2790..3624+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10488.339.1 ID=mRNA_S-dermatodea_contig10488.339.1|Name=mRNA_S-dermatodea_contig10488.339.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=835bp|location=Sequence derived from alignment at S-dermatodea_contig10488:2790..3624+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTTCGCCCTGAGACGGCGACCGTCGTACCACCGGTTAGGGACGAATGC
TGGCGGGGAGCAGCCCGACAAACTCTCGGAAGCTGCAGCACCTTGCATCG
AGATGGCCACCATAAAGACGAGCGAGATAACGGGCGCGACAGCGGGGAAG
GAAGCCCCCTCCCTGACCAAAATCACACGCAGCAATTGCGGGACAGATTC
CGATCCCTTGGAGGATGTTTACGATGTTGCTCCCAAGGCTTCGGTGCGAG
TGGGCGATATCCTCGTGCTGAGCTGCGATCGAGACTCCATGGTGCGCTTT
CAGGGCTCCGTGGGGAGTCGACGCAGAAAGGGACTCAAGGTTCTCGGAGT
CAGTACCCTGAAGCTGGCTCGCCACGGCACGATTTTCTTGAAGCTGGTTC
TTTCGCGGTCGAGCGAGTTCCTTGGCCGGACAGCCCGCGCCGAGAACCCC
TTTTTCTCCGCGCGCTACGGCTGCAGCGTCGTCGCGTTCCGCCTAAAAGG
AAGCACGGGGGGCGGGGTCGACCTCATCGGCAACGGCCCCGGAACGCCGT
ACCGCATCTTGATCGACGATTCGAGGTGTCCCACCGATCTCGATAGCGCA
ACCGCCTGCCTGTCCACCTGCGGGCGTGACAGCACCGTAGCTGCGCCCAC
CAACTCCTTGGACGGGGTGGATGAGGTGCTGGTTGTGAGCAAGGACGATC
CTCCGAAGTCGGTTCGTAGCCCGCTTCATTCCGCCTTGCCGACGCCGTTG
CTGTCTTCCCCCGGTGACGACGGAAGCCCAGCCGTAGGGGTTTCACCGCC
GGGGGAGGCCGCGCTGCTCCCGCGGCGGCGAAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10488:2790..3624+

>mRNA_S-dermatodea_contig10488.339.1 ID=mRNA_S-dermatodea_contig10488.339.1|Name=mRNA_S-dermatodea_contig10488.339.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1668bp|location=Sequence derived from alignment at S-dermatodea_contig10488:2790..3624+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGTTCGCCCTGAGACGGCGACCGTCGTACCACCGGTTAGGGACGAATGC
TGGCGGGGAGCAGCCCGACAAACTCTCGGAAGCTGCAGCACCTTGCATCG
AGATGGCCACCATAAAGACGAGCGAGATAACGGGCGCGACAGCGGGGAAG
GAAGCCCCCTCCCTGACCAAAATCACACGCAGCAATTGCGGGACAGATTC
CGATCCCTTGGAGGATGTTTACGATGTTGCTCCCAAGGCTTCGGTGCGAG
TGGGCGATATCCTCGTGCTGAGCTGCGATCGAGACTCCATGGTGCGCTTT
CAGGGCTCCGTGGGGAGTCGACGCAGAAAGGGACTCAAGGTTCTCGGAGT
CAGTACCCTGAAGCTGGCTCGCCACGGCACGATTTTCTTGAAGCTGGTTC
TTTCGCGGTCGAGCGAGTTCCTTGGCCGGACAGCCCGCGCCGAGAACCCC
TTTTTCTCCGCGCGCTACGGCTGCAGCGTCGTCGCGTTCCGCCTAAAAGG
AAGCACGGGGGGCGGGGTCGACCTCATCGGCAACGGCCCCGGAACGCCGT
ACCGCATCTTGATCGACGATTCGAGGTGTCCCACCGATCTCGATAGCGCA
ACCGCCTGCCTGTCCACCTGCGGGCGTGACAGCACCGTAGCTGCGCCCAC
CAACTCCTTGGACGGGGTGGATGAGGTGCTGGTTGTGAGCAAGGACGATC
CTCCGAAGTCGGTTCGTAGCCCGCTTCATTCCGCCTTGCCGACGCCGTTG
CTGTCTTCCCCCGGTGACGACGGAAGCCCAGCCGTAGGGGTTTCACCGCC
GGGGGAGGCCGCGCTGCTCCCGCGGCGGCGAAGGCCGTTCGCCCTGAGAC
GGCGACCGTCGTACCACCGGTTAGGGACGAATGCTGGCGGGGAGCAGCCC
GACAAACTCTCGGAAGCTGCAGCACCTTGCATCGAGATGGCCACCATAAA
GACGAGCGAGATAACGGGCGCGACAGCGGGGAAGGAAGCCCCCTCCCTGA
CCAAAATCACACGCAGCAATTGCGGGACAGATTCCGATCCCTTGGAGGAT
GTTTACGATGTTGCTCCCAAGGCTTCGGTGCGAGTGGGCGATATCCTCGT
GCTGAGCTGCGATCGAGACTCCATGGTGCGCTTTCAGGGCTCCGTGGGGA
GTCGACGCAGAAAGGGACTCAAGGTTCTCGGAGTCAGTACCCTGAAGCTG
GCTCGCCACGGCACGATTTTCTTGAAGCTGGTTCTTTCGCGGTCGAGCGA
GTTCCTTGGCCGGACAGCCCGCGCCGAGAACCCCTTTTTCTCCGCGCGCT
ACGGCTGCAGCGTCGTCGCGTTCCGCCTAAAAGGAAGCACGGGGGGCGGG
GTCGACCTCATCGGCAACGGCCCCGGAACGCCGTACCGCATCTTGATCGA
CGATTCGAGGTGTCCCACCGATCTCGATAGCGCAACCGCCTGCCTGTCCA
CCTGCGGGCGTGACAGCACCGTAGCTGCGCCCACCAACTCCTTGGACGGG
GTGGATGAGGTGCTGGTTGTGAGCAAGGACGATCCTCCGAAGTCGGTTCG
TAGCCCGCTTCATTCCGCCTTGCCGACGCCGTTGCTGTCTTCCCCCGGTG
ACGACGGAAGCCCAGCCGTAGGGGTTTCACCGCCGGGGGAGGCCGCGCTG
CTCCCGCGGCGGCGAAGG
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