mRNA_S-dermatodea_contig10479.338.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10479.338.1
Unique NamemRNA_S-dermatodea_contig10479.338.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Match: D8LKA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKA8_ECTSI)

HSP 1 Score: 621 bits (1602), Expect = 5.470e-213
Identity = 405/676 (59.91%), Postives = 454/676 (67.16%), Query Frame = 1 
Query:   82 MAMDMPPPSPRTEKRRLTGAPEDLEVLASPSKRGTP-QSRSFFS-SGSDAPRTPADVSWIRDQAGTTPRALDRDFLAASPASESSMAPRVSGVSVT-------------KSKMYNRRTWTKEENERLQEGIASLGGPNADLGKNEWNTIAQDFLKNSRTGTQCATHWRMVLKPALLKGVWSPEEDAVIFDCLARGVIDWSEVASFLPKRKAKHCRERWNNHLDPALSNGQ-WLPAEEAKLMSAVEAHGTNWTQVVRLLPGRSESMAQQHWNSIVLRNSVGTGGARRGRRKGDASAXXXXXXXXXXXXXXXXXXXXXXXXRAKPSSLPVEPRV----HMPGQDLITREEGMSGGPEKVVTLTDREKALMDHAFKTGLSAAVGGGGGGVGMAPDLAGNRDETLTLSTEEEDIFAPLTAALLKEED-CESYSPVGMAPPSPCASPLKPHKQEPGYISMGDQLGSCWGVVDDDPAMVDLYRSLDNIGESLFNEDTSELLSFDFDSVDKPAPS--------------KGWDAP-------KEESPFRLAAAKAAATMEHRLSPAKRFLQLQGQDRSLEEACARAAAXXXXXXXXXXXXXXXXADAGAXXXXXXXXXXXXP-----PSARARTPCQARVPPAAAV-GCHE-HRQAVPCAVFDRPRLLVRGERTDADARAAAA 1962
            MAM+MPPPSPRTEKRRL GAP +LEVLASPSKRGTP ++RSFFS SGSD PRTPADVSWIR+QAGTTPRALDRDFLAASPA+   +                       KSKM+NRRTWTKEEN++L EGIASLGGPN++ GKNEWN IA  FLK SRTGTQCATHW+MV+KPALLKGVWS EEDAVIFDC+ARGV DW+EVA+ LPKRK KHCRERW+NHLDP+L  G  W  AEE KL+SAVEA+GTNW+ + R  PGRSE++ QQHWN +V RNSVG    R G   G   A                        RAK S+LP EP       + GQDLI RE       +  VTLTDREKALMDHAFKTGL+              D+      +LTLS+EE+D+FAPLTAALL++E+ C   SP GM PPSP  SPLK HKQ+P Y S+GDQLG  W VVDDDPA+ DLYRSLDNIGESLFNED  EL SFDFD+V KPAPS              K WDAP       K  SPFR AAA AAAT+  + SPAKR  Q   + + LEEACARA  XXXXXXXXXXXXXXXX     XXXXXXXXX         P AR RT  QAR+PP  AV G  + H   VP AVFDR  L + GERT A A AAAA
Sbjct:    1 MAMNMPPPSPRTEKRRLAGAPAELEVLASPSKRGTPSKNRSFFSTSGSDNPRTPADVSWIREQAGTTPRALDRDFLAASPAAAVDVGXXXXXXXXXXXXXXXXXXXXXXKSKMFNRRTWTKEENDQLHEGIASLGGPNSNFGKNEWNKIAHHFLKGSRTGTQCATHWKMVVKPALLKGVWSAEEDAVIFDCVARGVTDWTEVAAALPKRKPKHCRERWSNHLDPSLRKGPGWTAAEEVKLVSAVEANGTNWSLIARHFPGRSEAVIQQHWNELVFRNSVGGRRGRSGMESGGGVACSGRG-------------------RAKASTLPGEPSEIFLGDLGGQDLIARETEQQQ-QQPAVTLTDREKALMDHAFKTGLNGC------------DIG-----SLTLSSEEDDLFAPLTAALLRDEEGCGGCSPSGMPPPSPTCSPLKAHKQQPDYTSIGDQLGDGW-VVDDDPALADLYRSLDNIGESLFNEDNFEL-SFDFDNVGKPAPSCDSGLSCGQQTNPSKSWDAPGLLPSQEKSGSPFRQAAANAAATLGRQHSPAKREPQGPSKGKELEEACARAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGPSAGRTNPGARRRTSRQARIPPTTAVLGRRDAHETEVPDAVFDRAWLSLGGERTVAAATAAAA 637
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BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Match: A0A6H5JZ10_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ10_9PHAE)

HSP 1 Score: 419 bits (1077), Expect = 1.490e-135
Identity = 253/456 (55.48%), Postives = 282/456 (61.84%), Query Frame = 1 
Query:  469 EWNTIAQDFLKNSRTGTQCATHWRMVLKPALLKGVWSPEEDAVIFDCLARGVIDWSEVASFLPKRKAKHCRERWNNHLDPALSNGQ-WLPAEEAKLMSAVEAHGTNWTQVVRLLPGRSESMAQQHWNSIVLRNSVGTGGARRGRRKGDASAXXXXXXXXXXXXXXXXXXXXXXXXRAKPSSLPVEPRV----HMPGQDLITRE-EGMSGGPEKVVTLTDREKALMDHAFKTGLSAAVGGG--------------------GGGVGMAPDLAGNRDETLTLSTEEEDIFAPLTAALLKEEDCESY-SPVGMAPPSPCASPLKPHKQEPGYISMGDQLGSCWGVVDDDPAMVDLYRSLDNIGESLFNEDTSELLSFDFDSVDKPAPS--------------KGWDAPK-------EESPFRLAAAKAAATMEHRLSPAKRFLQLQGQDRSLEEACARA 1692
            EWN IA  FLK SRTGTQCATHW+MV+KPALLKGVWSPEEDAVIFDC+ARGV DW+EVA+ LPKRK KHCRERW+NHLDP L  G  W  AEE KL+SAVEA+GTNW+ + R  PGRSE++ QQHWN IV RNSVG    RRGR   D+                          RAK S+LP EP       + GQDLI RE E         VTLTDREKALMDHAFKTGL+AA G                       G V   P   G    +LTLS+EE+D+FAPLTAA           SP GM PPSP  SPLK HKQ+P Y S+GDQLG  W VVDDDPA+ DLYRSLDNIGESLFNED  EL SFDFD+V KPAPS              K WDAP          SPFR AAA AAAT+  + SPAKR  +   + + LEEACARA
Sbjct:    8 EWNKIAHHFLKGSRTGTQCATHWKMVVKPALLKGVWSPEEDAVIFDCVARGVTDWAEVAAALPKRKPKHCRERWSNHLDPNLRKGPGWTAAEEVKLVSAVEANGTNWSLIARHFPGRSEAVIQQHWNEIVFRNSVG---GRRGRTGTDSGGGVACSARG----------------RAKASTLPAEPSEIFLGDLGGQDLIARETEQXXXXXXXAVTLTDREKALMDHAFKTGLNAATGSARVAQQXXXXXXXXXXXXXXXXGAVAXXPK--GCDIGSLTLSSEEDDLFAPLTAAXXXXXXXXXXCSPSGMPPPSPTCSPLKAHKQQPDYTSIGDQLGDGW-VVDDDPALDDLYRSLDNIGESLFNEDNFEL-SFDFDNVGKPAPSCDSGLSCGQPTNPSKSWDAPSLLPSQETSGSPFRQAAANAAATLGCQHSPAKREPRGSSKGKELEEACARA 440
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BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Match: A0A7S2SVF3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVF3_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.420e-36
Identity = 69/164 (42.07%), Postives = 95/164 (57.93%), Query Frame = 1 
Query:  370 KMYNRRTWTKEENERLQEGIASLGGPNADLGKNEWNTIAQDFLKNSRTGTQCATHWRMVLKPALLKGVWSPEEDAVIFDCLARGVIDWSEVASFLPKRKAKHCRERWNNHLDPALSNGQWLPAEEAKLMSAVEAHGTNWTQVVRLLPGRSESMAQQHWNSIVLR 861
            K   R  WTK E++RL++G+   G         +W+ IA++ L   RT  QC   WR VL+  L+KG W+ EED +I DC+  G+  WSE+A ++P R  K  RERW NHLDP +  G W   E+A L  A    G +WT++ RLLPGR+E+  +  WNS   R
Sbjct:   34 KGVKRGRWTKNEDDRLKQGVTLYG-------TTDWSRIAKEVLGGQRTEQQCVQRWRKVLERGLVKGTWTKEEDQIIIDCIEAGINRWSEIAEYIPGRVGKQARERWFNHLDPTIKKGSWTDEEDAILTVAQARWGNSWTKIARLLPGRAENTIKNRWNSASRR 190
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BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Match: A0A5A8DBZ9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DBZ9_CAFRO)

HSP 1 Score: 145 bits (366), Expect = 3.440e-34
Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 1 
Query:  391 WTKEENERLQEGIASLGGPNADLGKNEWNTIAQDFLKNSRTGTQCATHWRMVLKPALLKGVWSPEEDAVIFDCLARGVIDWSEVASFLPKRKAKHCRERWNNHLDPALSNGQWLPAEEAKLMSAVEAHGTNWTQVVRLLPGRSESMAQQHWNSIVLR 861
            W+ EE+  L++G+ +LG  N       W  I++++L+  RT  QC   W+ VL+P L+KG W+ EED VI +C+  G+  WSE++  +P R  K CRERW NHLDP++    W   E+  L  A  + G  W ++ +LLPGRSE+  +  WNS + R
Sbjct:   11 WSDEEDGSLRQGVQTLGAKN-------WKRISEEYLQGRRTDVQCLHRWQKVLRPGLVKGPWTTEEDQVIVNCINAGITKWSEISERIPGRIGKQCRERWFNHLDPSIKKDPWSAEEDRILEEAQCSIGNKWCEIAKLLPGRSENSVKNRWNSAMRR 160
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BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Match: F0Y9B4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9B4_AURAN)

HSP 1 Score: 136 bits (343), Expect = 6.630e-34
Identity = 64/156 (41.03%), Postives = 88/156 (56.41%), Query Frame = 1 
Query:  391 WTKEENERLQEGIASLGGPNADLGKNEWNTIAQDFLKNSRTGTQCATHWRMVLKPALLKGVWSPEEDAVIFDCLAR---GVIDWSEVASFLPKRKAKHCRERWNNHLDPALSNGQWLPAEEAKLMSAVEAHGTNWTQVVRLLPGRSESMAQQHWNS 849
            WT+EE+ RL+E + + G  N       W  +A   L N R+  QC   W  VL+P L KG W+ +ED ++ D + R   G I WS +A+ LP R  K CRERW NHLDP +  G W P E+  L      HG  W+++ +LLPGR+E+  +  WNS
Sbjct:    2 WTEEEDNRLREIVETFGAKN-------WKRLAM-LLGNVRSDVQCLHRWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNS 149
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BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Match: A0A2R5G768_9STRA (Transcription factor MYB3R-4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G768_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.330e-33
Identity = 62/157 (39.49%), Postives = 94/157 (59.87%), Query Frame = 1 
Query:  391 WTKEENERLQEGIASLGGPNADLGKNEWNTIAQDFLKNSRTGTQCATHWRMVLKPALLKGVWSPEEDAVIFDCLARGVIDWSEVASFLPKRKAKHCRERWNNHLDPALSNGQWLPAEEAKLMSAVEAHGTNWTQVVRLLPGRSESMAQQHWNSIVLR 861
            WT+EE+ +L+EG+ ++G         +W  I++++L   R+  QC   W+ VL+P L+KG W+ EED +I  C+ R +  WSE+A  +P R  K CRERW NHLDP + +  W   EE  L++A    G  W ++ +LLPGR E+  +  WNS + R
Sbjct:  175 WTREEDAKLREGVTAIGAT-------KWKKISEEYLGGRRSDVQCLHRWQKVLRPGLVKGPWTEEEDNMIRACIERKITKWSEIAERIPGRIGKQCRERWFNHLDPTIDHSAWTEEEEKVLVTAQATFGNRWCEIAKLLPGRPENAVKNRWNSAIRR 324
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BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Match: A0A2D4C4T3_PYTIN (Myb-like DNA-binding protein, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4T3_PYTIN)

HSP 1 Score: 141 bits (355), Expect = 5.700e-33
Identity = 70/171 (40.94%), Postives = 96/171 (56.14%), Query Frame = 1 
Query:  391 WTKEENERLQEGIASLGGPNADLGKNEWNTIAQDFLKNSRTGTQCATHWRMVLKPALLKGVWSPEEDAVIFDCLAR---GVIDWSEVASFLPKRKAKHCRERWNNHLDPALSNGQWLPAEEAKLMSAVEAHGTNWTQVVRLLPGRSESMAQQHWNSIVLRNSVGTGGARRG 894
            WTKEE+ RL+E +   GG N       W  IA+  L + RT  QC   W  VLKP L+KG W+PEED V+   + R   G I W ++A  LP R  K CRERW NHLD ++  GQW P E+  + S  +  G  W+++ ++LPGR+E+  +  +NS   R  +    A RG
Sbjct:  140 WTKEEDARLREAVQRFGGKN-------WKRIAET-LXHGRTDVQCLHRWNKVLKPGLVKGPWTPEEDRVLLSLIKRYGVGKIRWCDIALHLPGRIGKQCRERWCNHLDSSIRKGQWTPEEDELVFSLQQQLGNKWSEIAKMLPGRTENAVKNRFNSAARRKWLMAQAATRG 302
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BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Match: UPI0010AA8E84 (transcription factor MYB3R-1-like n=1 Tax=Malus domestica TaxID=3750 RepID=UPI0010AA8E84)

HSP 1 Score: 137 bits (344), Expect = 6.220e-33
Identity = 64/156 (41.03%), Postives = 90/156 (57.69%), Query Frame = 1 
Query:  391 WTKEENERLQEGIASLGGPNADLGKNEWNTIAQDFLKNSRTGTQCATHWRMVLKPALLKGVWSPEEDAVIFDCLAR-GVIDWSEVASFLPKRKAKHCRERWNNHLDPALSNGQWLPAEEAKLMSAVEAHGTNWTQVVRLLPGRSESMAQQHWNSIV 855
            WT EE+E L+  +    G N       W  IA+ F  N RT TQC   W+ VL P ++KG WS EED +I + + + G  DW  +A  LP R  K CRERW+NHL+PA+    W  AEE  L+ A + +G  W ++ R LPGR+++  + HWN+ +
Sbjct:   39 WTPEEDEILRRAVERFKGKN-------WKKIAECF--NGRTDTQCLHRWQKVLNPRMVKGPWSKEEDDIIIEWVEKYGPKDWCSIAQHLPGRIGKQCRERWHNHLNPAIKKDAWTQAEEFALIRAHQIYGNQWAEITRFLPGRTDNAIKNHWNNSL 185
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BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Match: K3WMW9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMW9_GLOUD)

HSP 1 Score: 134 bits (338), Expect = 7.020e-33
Identity = 66/167 (39.52%), Postives = 96/167 (57.49%), Query Frame = 1 
Query:  391 WTKEENERLQEGIASLGGPNADLGKNEWNTIAQDFLKNSRTGTQCATHWRMVLKPALLKGVWSPEEDAVIFDCLAR---GVIDWSEVASFLPKRKAKHCRERWNNHLDPALSNGQWLPAEEAKLMSAVEAHGTNWTQVVRLLPGRSESMAQQ----HWNSIVLRNSV 870
            W +EE+ERL++ +A  GG +       W  IA+  L N RT  QC   W  VLKP L+KG W+PEED ++   +AR   G I W ++A  LP R  K CRERW NHLD  +  GQW P E+  +    +  G  W+++ +LLPGR+E+  +     + NS V+++ +
Sbjct:   12 WLREEDERLRDAVARFGGKS-------WKLIAES-LGNGRTDVQCLHRWNKVLKPGLIKGPWTPEEDTILLGLIARYGVGKIRWCDIALHLPGRIGKQCRERWCNHLDANIRKGQWTPEEDETVFRWQQKLGNKWSEIAKLLPGRTENAVKNSNNNNRNSDVMKSKL 170
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BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Match: A0A8J2T217_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T217_9STRA)

HSP 1 Score: 140 bits (352), Expect = 9.630e-33
Identity = 66/165 (40.00%), Postives = 96/165 (58.18%), Query Frame = 1 
Query:  382 RRTWTKEENERLQEGIASLGGPNADLGKNEWNTIAQDFLK-NSRTGTQCATHWRMVLKPALLKGVWSPEEDAVIFDCLARGVI-DWSEVASFLPKRKAKHCRERWNNHLDPALSNGQWLPAEEAKLMSAVEAHGTNWTQVVRLLPGRSESMAQQHWNSIVLRNSV 870
            RR WTK E+E+L+ G+ +LG        ++W  +   +L  + R   QC   W  VL+  L+KG ++P+EDA+I + L+ G    W +VA+ +P R  K CRERW NHLDP L  G W P E+A + +A    G  WT++  LLPGR+E+  +  WNS   RN+ 
Sbjct:   19 RRRWTKREDEKLRAGVRALG-------TDDWARVCSRYLSGHGRAPDQCRHRWEHVLREGLVKGAFTPDEDAIILEMLSNGQRPSWMDVAARIPGRIGKQCRERWTNHLDPNLKKGGWTPEEDAVMAAAQARWGNAWTKIAELLPGRAENAVKNRWNSAFRRNNA 176
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10479.338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKA8_ECTSI5.470e-21359.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ10_9PHAE1.490e-13555.48MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S2SVF3_9STRA1.420e-3642.07Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A5A8DBZ9_CAFRO3.440e-3440.13Uncharacterized protein n=4 Tax=Cafeteria roenberg... [more]
F0Y9B4_AURAN6.630e-3441.03Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A2R5G768_9STRA2.330e-3339.49Transcription factor MYB3R-4 n=1 Tax=Hondaea ferme... [more]
A0A2D4C4T3_PYTIN5.700e-3340.94Myb-like DNA-binding protein, putative n=1 Tax=Pyt... [more]
UPI0010AA8E846.220e-3341.03transcription factor MYB3R-1-like n=1 Tax=Malus do... [more]
K3WMW9_GLOUD7.020e-3339.52Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8J2T217_9STRA9.630e-3340.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10479contigS-dermatodea_contig10479:3338..7110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score630.6
Seed ortholog evalue8.4e-178
Seed eggNOG ortholog2880.D8LKA8
Preferred nameBAS1
KEGG koko:K09420,ko:K09422,ko:K09423,ko:K21769
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000976,GO:0000981,GO:0000988,GO:0000989,GO:0001046,GO:0001047,GO:0001067,GO:0001076,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0030154,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044085,GO:0044212,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048285,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051225,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0097159,GO:0140014,GO:0140110,GO:1901363,GO:1902680,GO:1902850,GO:1903047,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-01_009570.1
Exons6
Model size1964
Cds size1962
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10479.338.1prot_S-dermatodea_contig10479.338.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10479 3338..7110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924159.0330107-CDS-S-dermatodea_contig10479:3337..34941622924159.0330107-CDS-S-dermatodea_contig10479:3337..3494Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 3338..3494 -
1694079057.9887466-CDS-S-dermatodea_contig10479:3337..34941694079057.9887466-CDS-S-dermatodea_contig10479:3337..3494Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 3338..3494 -
1622924159.0469291-CDS-S-dermatodea_contig10479:3505..42321622924159.0469291-CDS-S-dermatodea_contig10479:3505..4232Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 3506..4232 -
1694079057.9984725-CDS-S-dermatodea_contig10479:3505..42321694079057.9984725-CDS-S-dermatodea_contig10479:3505..4232Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 3506..4232 -
1622924159.0571973-CDS-S-dermatodea_contig10479:4316..49261622924159.0571973-CDS-S-dermatodea_contig10479:4316..4926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 4317..4926 -
1694079058.0059826-CDS-S-dermatodea_contig10479:4316..49261694079058.0059826-CDS-S-dermatodea_contig10479:4316..4926Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 4317..4926 -
1622924159.0676305-CDS-S-dermatodea_contig10479:5700..59911622924159.0676305-CDS-S-dermatodea_contig10479:5700..5991Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 5701..5991 -
1694079058.0134387-CDS-S-dermatodea_contig10479:5700..59911694079058.0134387-CDS-S-dermatodea_contig10479:5700..5991Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 5701..5991 -
1622924159.0782819-CDS-S-dermatodea_contig10479:6605..66471622924159.0782819-CDS-S-dermatodea_contig10479:6605..6647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 6606..6647 -
1694079058.0230732-CDS-S-dermatodea_contig10479:6605..66471694079058.0230732-CDS-S-dermatodea_contig10479:6605..6647Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 6606..6647 -
1622924159.0864887-CDS-S-dermatodea_contig10479:6975..71101622924159.0864887-CDS-S-dermatodea_contig10479:6975..7110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 6976..7110 -
1694079058.034062-CDS-S-dermatodea_contig10479:6975..71101694079058.034062-CDS-S-dermatodea_contig10479:6975..7110Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10479 6976..7110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10479.338.1

>prot_S-dermatodea_contig10479.338.1 ID=prot_S-dermatodea_contig10479.338.1|Name=mRNA_S-dermatodea_contig10479.338.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=654bp
KKRRDERAIREGQSVIGPANTLVSRCSMAMDMPPPSPRTEKRRLTGAPED
LEVLASPSKRGTPQSRSFFSSGSDAPRTPADVSWIRDQAGTTPRALDRDF
LAASPASESSMAPRVSGVSVTKSKMYNRRTWTKEENERLQEGIASLGGPN
ADLGKNEWNTIAQDFLKNSRTGTQCATHWRMVLKPALLKGVWSPEEDAVI
FDCLARGVIDWSEVASFLPKRKAKHCRERWNNHLDPALSNGQWLPAEEAK
LMSAVEAHGTNWTQVVRLLPGRSESMAQQHWNSIVLRNSVGTGGARRGRR
KGDASAGGSGGSGNGSGSGSGGSGGGGVRVRAKPSSLPVEPRVHMPGQDL
ITREEGMSGGPEKVVTLTDREKALMDHAFKTGLSAAVGGGGGGVGMAPDL
AGNRDETLTLSTEEEDIFAPLTAALLKEEDCESYSPVGMAPPSPCASPLK
PHKQEPGYISMGDQLGSCWGVVDDDPAMVDLYRSLDNIGESLFNEDTSEL
LSFDFDSVDKPAPSKGWDAPKEESPFRLAAAKAAATMEHRLSPAKRFLQL
QGQDRSLEEACARAAAAAAASATKPAGPASPSADAGATAAATSSTAAAAP
PSARARTPCQARVPPAAAVGCHEHRQAVPCAVFDRPRLLVRGERTDADAR
AAAA
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mRNA from alignment at S-dermatodea_contig10479:3338..7110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10479.338.1 ID=mRNA_S-dermatodea_contig10479.338.1|Name=mRNA_S-dermatodea_contig10479.338.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3773bp|location=Sequence derived from alignment at S-dermatodea_contig10479:3338..7110- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGAAGAGAAGGGACGAGAGAGCTATACGGGAGGGCCAGAGCGTGATAGG
CCCGGCCAACACTCTCGTTTCACGTTGCAGCATGGCCATGGATATGCCAC
CGCCCTCCCCTCGAACGGAAAAGCGTCGCCTGACGGTGAGTGGGAGTGGC
ATAGGGCACAGCAGTGAGCGGGCAGGTCTGCGAGCTACAACCAAGCTGGT
GCTTCTGTCACTGTTGTTCTTCGTGGTTTCCCCGCGGGGCGTGTGTCTGC
TGCGACAAGTGTTCCAAAGCAGCGAGGAGCTCCAGACAGCCCGTCTCAAT
CCAAGCGCCTCCCAGTTAGGGCGCAAGTTTAGCTGTGGAGCGGCATTCTC
ATTATCGGAAAGCGCACAGTTAGTGTCAACGCTCATGTCGTGCGCATATC
TTATATTTCCCCCTGTCTCTCCGCGTACTGTGCTCCCATCCCGCGCCCTG
TGCTTTCTAAAAGGGTGCCCCTGAAGATCTGGAGGTCTTGGCGTCCCCCT
CCAAGGTGTGTGCGTCCGTTCACCTTGTCGTCTGCCACAGGAAATTCTAG
AACCTCGACCGAGACGTTCATAGCCTGCTGCACGGCCTCGCGTGATGCAC
CAGTATCATACTATATAAATAGCAGCTAAATAGCTGTTGTTGTTGCTATT
ATAACAAGTAGATAGATACTGGTATATATAATAGTTGCAGCACGTTATGG
CCAAGGTGTGTCAATGAAGCGATTACGAATTGCCGCGTTTTGGCTCTCTC
TTCCTTGCCCCGGCCGCCGCAGGGTTCGTGTGTACTAGCAGTACATAGGC
ATATAATCGAACAGCTCGTGTATACATTGTAGACAGGAAAAGCGCCAAAA
GAGCAGCAACTTTGGAAAAATACCTATATACAGCATAATATATATATCAG
GTATTTTTCCAAAGAGCAGCAACTCCGCCGGTCTCCTGTGCAACACGACA
CGTGTGATGTATCGTAATACTATCATACCATAATATGCAACTTCTACTAC
AGGAAGAGCTCTATGTAGTCAGTCATTGATTGTTCCTTTGGCGCCGTTTT
TCGGCTCAGCTCTGCTGACGTTGTCCTCCCCCCCCTCCCCTCCCCGCGCC
CGTTTATCACTCTCCGTAGAGAGGGACGCCACAGTCTCGTTCTTTTTTCT
CCAGTGGCTCGGACGCTCCTCGTACGCCCGCCGATGTCAGCTGGATTCGC
GACCAGGCCGGCACAACCCCGCGCGCCCTTGACCGCGATTTCTTGGCGGC
GAGCCCGGCCTCGGAGAGTTCGATGGCGCCGAGGGTGTCAGGGGTTTCCG
TAACGAAGAGCAAGATGTACAACCGGAGGACGTGGACGAAGGAGGAGAAC
GAGAGGCTTCAGGAGGGGATAGCCTCGCTGGGGGGACCTAACGCAGATCT
CGGCAAGAACGTGAGAGTTTCGTTTTCCTTTCTTTTGCATGGCGGGAATC
GACCCCCGCTCTTTTTTCGCGCAGTGGCTCCCACTGTTGTCTTTTTTACT
ATAAACAACCATCATACAGAGTTGTTGTTACACAGCAGTATGATATGATA
GATGCCGTTTATTGCGTATCGGAGTATCAAATCATATACGGATCAGAAAC
CTCGCCGTTCATTCCCGAAGTTGCAGACATCAGAGGGGGTGCAAAACAAG
TCGCCGCCGGTCGGGCATTTTTCTTTCTGTCACAGAGCCCCTCGAACAAA
GCCCGCGTTTTCGCTCGCTTCGCTTTGCGGCACGAGGGAGACGAACGCTG
ACTGCTGCACCCGGCGAGTCTTGCTAACTACATAAAAATTTGGCTGAAAC
CGACGGCCGTATGATACTGAAACGGTTGTATACTGTACATAATATGCATT
CCGGACGAGGCCGGCGGTGTGTCATTTGTTGCACTTGTTCGTGCGCGGCA
CACGTACCAGCCCCGTCGTCCAGCAACTGCAGCAGCCAAAATCTGGCAAA
ATGAAGAACTTGAGCGTGTGAGGCCCATGAAGTATCGAGCTAGTGTGAGA
GGCGCAAGTGTGAGAGGAGCGCGTGCGGAACAACAAAAGTAGCAGACTAT
GGCAGACCGCTCCTGTCCCCATATATTGGCTCGTTCCGCCTTCGTACCTG
CGGTAGCAGGGTGGCTGACAAACCTTCGCCCGTCCTCTTAATGTGCTCCT
CTTTTGCCTTATCCGGATCAAACACGCGCAACAGGAGTGGAACACGATCG
CTCAGGACTTCCTGAAGAACTCGCGGACGGGCACCCAGTGCGCGACGCAC
TGGAGGATGGTGCTGAAGCCCGCCCTGCTGAAGGGGGTTTGGTCCCCGGA
GGAAGACGCGGTCATCTTCGACTGCCTCGCGCGCGGCGTCATCGACTGGT
CCGAGGTGGCGTCCTTCCTCCCGAAGCGGAAGGCCAAGCACTGCCGCGAG
CGCTGGAACAACCACCTCGACCCAGCCCTCAGCAACGGCCAGTGGCTGCC
CGCCGAGGAGGCGAAGCTCATGAGCGCCGTCGAGGCCCACGGCACTAACT
GGACCCAGGTCGTGCGTCTCCTTCCAGGGCGCTCGGAGTCGATGGCGCAG
CAGCACTGGAACTCGATCGTCCTGCGCAATTCCGTCGGCACCGGCGGCGC
CAGGCGCGGCCGGCGCAAGGGAGACGCCTCGGCTGGCGGTAGCGGGGGAA
GCGGAAATGGAAGCGGCAGCGGAAGCGGCGGCAGCGGCGGCGGTGGTGTC
AGGGTCAGAGCGAAGCCGTCGTCATTACCGGTAGAGCCGAGGGTCCACAT
GCCCGGCCAGGACCTCATCACCCGAGAGGAAGGAATGTCGGGGGGTGGTG
GTGGTGGTGGTGGTGGTGGGGGGGGGGGGTGTGGTGGCGGCGTCGGGAGG
AACGGTGCGGGGTTGCCCACCATGGGAGGCCCTGAGAAGGTGGTGACGCT
CACTGACCGCGAGAAGGCTCTCATGGACCACGCGTTCAAGACTGGTCTGA
GCGCCGCGGTGGGCGGTGGCGGGGGTGGAGTAGGGATGGCGCCGGACTTG
GCCGGGAACCGCGACGAAACGCTAACGTTGTCCACGGAAGAGGAAGACAT
TTTCGCCCCGCTGACCGCCGCCCTTCTGAAGGAGGAGGACTGCGAGAGCT
ACAGCCCGGTCGGCATGGCTCCGCCATCACCGTGCGCTTCCCCTCTGAAG
CCCCACAAGCAGGAGCCGGGCTACATCTCGATGGGTGACCAGCTGGGGAG
TTGCTGGGGAGTGGTGGATGACGACCCCGCGATGGTGGACCTGTACCGGA
GCCTAGATAACATCGGCGAGTCCCTCTTCAACGAGGACACCTCCGAGCTC
CTCAGCTTCGATTTCGACAGTGTCGACAAGCCCGCCCCGTCTAAGGGCTG
GGACGCCCCGAAGGAGGAGTCTCCATTCCGCCTAGCCGCCGCGAAAGCCG
CCGCCACGATGGAGCACCGGCTCTCCCCCGCGAAGCGTTTTTTACAGCTA
CAGGGCCAGGATCGAAGTCTCGAGGAGGCGTGCGCAAGGGCAGCGGCAGC
CGCAGCCGCCTCTGCGACGAAACCGGCTGGGCCAGCGTCCCCTTCGGCGG
ATGCGGGCGCAACAGCCGCGGCAACCTCGTCGACCGCAGCAGCAGCTCCA
CCGTCGTCGTTGGCAGAGCTCGCGCCCGGACCCCGTGTCAAGCAAGGGTT
CCTCCGGCAGCTGCTGTCGGCTGTCACGAACACCGACAAGCCGTCCCTTG
CGCCGTTTTCGACCGTCCGCGGCTGCTTGTCCGAGGCGAACGCACCGACG
CCGATGCACGAGCGGCAGCAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10479:3338..7110-

>mRNA_S-dermatodea_contig10479.338.1 ID=mRNA_S-dermatodea_contig10479.338.1|Name=mRNA_S-dermatodea_contig10479.338.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3924bp|location=Sequence derived from alignment at S-dermatodea_contig10479:3338..7110- (Saccorhiza dermatodea SderLu1190fm monoicous)
AAGAAGAGAAGGGACGAGAGAGCTATACGGGAGGGCCAGAGCGTGATAGG
CCCGGCCAACACTCTCGTTTCACGTTGCAGCATGGCCATGGATATGCCAC
CGCCCTCCCCTCGAACGGAAAAGCGTCGCCTGACGAAGAAGAGAAGGGAC
GAGAGAGCTATACGGGAGGGCCAGAGCGTGATAGGCCCGGCCAACACTCT
CGTTTCACGTTGCAGCATGGCCATGGATATGCCACCGCCCTCCCCTCGAA
CGGAAAAGCGTCGCCTGACGGGTGCCCCTGAAGATCTGGAGGTCTTGGCG
TCCCCCTCCAAGGGTGCCCCTGAAGATCTGGAGGTCTTGGCGTCCCCCTC
CAAGAGAGGGACGCCACAGTCTCGTTCTTTTTTCTCCAGTGGCTCGGACG
CTCCTCGTACGCCCGCCGATGTCAGCTGGATTCGCGACCAGGCCGGCACA
ACCCCGCGCGCCCTTGACCGCGATTTCTTGGCGGCGAGCCCGGCCTCGGA
GAGTTCGATGGCGCCGAGGGTGTCAGGGGTTTCCGTAACGAAGAGCAAGA
TGTACAACCGGAGGACGTGGACGAAGGAGGAGAACGAGAGGCTTCAGGAG
GGGATAGCCTCGCTGGGGGGACCTAACGCAGATCTCGGCAAGAACAGAGG
GACGCCACAGTCTCGTTCTTTTTTCTCCAGTGGCTCGGACGCTCCTCGTA
CGCCCGCCGATGTCAGCTGGATTCGCGACCAGGCCGGCACAACCCCGCGC
GCCCTTGACCGCGATTTCTTGGCGGCGAGCCCGGCCTCGGAGAGTTCGAT
GGCGCCGAGGGTGTCAGGGGTTTCCGTAACGAAGAGCAAGATGTACAACC
GGAGGACGTGGACGAAGGAGGAGAACGAGAGGCTTCAGGAGGGGATAGCC
TCGCTGGGGGGACCTAACGCAGATCTCGGCAAGAACGAGTGGAACACGAT
CGCTCAGGACTTCCTGAAGAACTCGCGGACGGGCACCCAGTGCGCGACGC
ACTGGAGGATGGTGCTGAAGCCCGCCCTGCTGAAGGGGGTTTGGTCCCCG
GAGGAAGACGCGGTCATCTTCGACTGCCTCGCGCGCGGCGTCATCGACTG
GTCCGAGGTGGCGTCCTTCCTCCCGAAGCGGAAGGCCAAGCACTGCCGCG
AGCGCTGGAACAACCACCTCGACCCAGCCCTCAGCAACGGCCAGTGGCTG
CCCGCCGAGGAGGCGAAGCTCATGAGCGCCGTCGAGGCCCACGGCACTAA
CTGGACCCAGGTCGTGCGTCTCCTTCCAGGGCGCTCGGAGTCGATGGCGC
AGCAGCACTGGAACTCGATCGTCCTGCGCAATTCCGTCGGCACCGGCGGC
GCCAGGCGCGGCCGGCGCAAGGGAGACGCCTCGGCTGGCGGTAGCGGGGG
AAGCGGAAATGGAAGCGGCAGCGGAAGCGGCGGCAGCGGCGGCGGTGGTG
TCAGGGTCAGAGCGAAGCCGTCGTCATTACCGGTAGAGCCGAGGGTCCAC
ATGCCCGGCCAGGACCTCATCACCCGAGAGGAAGGAATGTCGGGGGGAGT
GGAACACGATCGCTCAGGACTTCCTGAAGAACTCGCGGACGGGCACCCAG
TGCGCGACGCACTGGAGGATGGTGCTGAAGCCCGCCCTGCTGAAGGGGGT
TTGGTCCCCGGAGGAAGACGCGGTCATCTTCGACTGCCTCGCGCGCGGCG
TCATCGACTGGTCCGAGGTGGCGTCCTTCCTCCCGAAGCGGAAGGCCAAG
CACTGCCGCGAGCGCTGGAACAACCACCTCGACCCAGCCCTCAGCAACGG
CCAGTGGCTGCCCGCCGAGGAGGCGAAGCTCATGAGCGCCGTCGAGGCCC
ACGGCACTAACTGGACCCAGGTCGTGCGTCTCCTTCCAGGGCGCTCGGAG
TCGATGGCGCAGCAGCACTGGAACTCGATCGTCCTGCGCAATTCCGTCGG
CACCGGCGGCGCCAGGCGCGGCCGGCGCAAGGGAGACGCCTCGGCTGGCG
GTAGCGGGGGAAGCGGAAATGGAAGCGGCAGCGGAAGCGGCGGCAGCGGC
GGCGGTGGTGTCAGGGTCAGAGCGAAGCCGTCGTCATTACCGGTAGAGCC
GAGGGTCCACATGCCCGGCCAGGACCTCATCACCCGAGAGGAAGGAATGT
CGGGGGGCCCTGAGAAGGTGGTGACGCTCACTGACCGCGAGAAGGCTCTC
ATGGACCACGCGTTCAAGACTGGTCTGAGCGCCGCGGTGGGCGGTGGCGG
GGGTGGAGTAGGGATGGCGCCGGACTTGGCCGGGAACCGCGACGAAACGC
TAACGTTGTCCACGGAAGAGGAAGACATTTTCGCCCCGCTGACCGCCGCC
CTTCTGAAGGAGGAGGACTGCGAGAGCTACAGCCCGGTCGGCATGGCTCC
GCCATCACCGTGCGCTTCCCCTCTGAAGCCCCACAAGCAGGAGCCGGGCT
ACATCTCGATGGGTGACCAGCTGGGGAGTTGCTGGGGAGTGGTGGATGAC
GACCCCGCGATGGTGGACCTGTACCGGAGCCTAGATAACATCGGCGAGTC
CCTCTTCAACGAGGACACCTCCGAGCTCCTCAGCTTCGATTTCGACAGTG
TCGACAAGCCCGCCCCGTCTAAGGGCTGGGACGCCCCGAAGGAGGAGTCT
CCATTCCGCCTAGCCGCCGCGAAAGCCGCCGCCACGATGGAGCACCGGCT
CTCCCCCGCGAAGCGTTTTTTACAGCTACAGGGCCAGGATCGAAGTCTCG
AGGAGGCGTGCGCAAGGGCAGCGGCAGCCGCAGCCGCCTCTGCGACGAAA
CCGGCTGGGCCAGCGTCCCCTTCGGCGGATGCGGGCGCAACAGCCGCGGC
AACCTCGTCGACCGCAGCAGCAGCTCCACCGTCGCCCTGAGAAGGTGGTG
ACGCTCACTGACCGCGAGAAGGCTCTCATGGACCACGCGTTCAAGACTGG
TCTGAGCGCCGCGGTGGGCGGTGGCGGGGGTGGAGTAGGGATGGCGCCGG
ACTTGGCCGGGAACCGCGACGAAACGCTAACGTTGTCCACGGAAGAGGAA
GACATTTTCGCCCCGCTGACCGCCGCCCTTCTGAAGGAGGAGGACTGCGA
GAGCTACAGCCCGGTCGGCATGGCTCCGCCATCACCGTGCGCTTCCCCTC
TGAAGCCCCACAAGCAGGAGCCGGGCTACATCTCGATGGGTGACCAGCTG
GGGAGTTGCTGGGGAGTGGTGGATGACGACCCCGCGATGGTGGACCTGTA
CCGGAGCCTAGATAACATCGGCGAGTCCCTCTTCAACGAGGACACCTCCG
AGCTCCTCAGCTTCGATTTCGACAGTGTCGACAAGCCCGCCCCGTCTAAG
GGCTGGGACGCCCCGAAGGAGGAGTCTCCATTCCGCCTAGCCGCCGCGAA
AGCCGCCGCCACGATGGAGCACCGGCTCTCCCCCGCGAAGCGTTTTTTAC
AGCTACAGGGCCAGGATCGAAGTCTCGAGGAGGCGTGCGCAAGGGCAGCG
GCAGCCGCAGCCGCCTCTGCGACGAAACCGGCTGGGCCAGCGTCCCCTTC
GGCGGATGCGGGCGCAACAGCCGCGGCAACCTCGTCGACCGCAGCAGCAG
CTCCACCGTCAGCTCGCGCCCGGACCCCGTGTCAAGCAAGGGTTCCTCCG
GCAGCTGCTGTCGGCTGTCACGAACACCGACAAGCCGTCCCTTGCGCCGT
TTTCGACCGTCCGCGGCTGCTTGTCCGAGGCGAACGCACCGACGCCGATG
CACGAGCGGCAGCAGCGAGCTCGCGCCCGGACCCCGTGTCAAGCAAGGGT
TCCTCCGGCAGCTGCTGTCGGCTGTCACGAACACCGACAAGCCGTCCCTT
GCGCCGTTTTCGACCGTCCGCGGCTGCTTGTCCGAGGCGAACGCACCGAC
GCCGATGCACGAGCGGCAGCAGCG
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