prot_S-dermatodea_contig10477.337.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig10477.337.1
Unique Name	prot_S-dermatodea_contig10477.337.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	224

Homology

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BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 358 bits (920), Expect = 6.620e-124
Identity = 181/219 (82.65%), Postives = 198/219 (90.41%), Query Frame = 0

Query:    1 MVSTQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            MV+TQ+FLG+AA+LIASS AFVAPMAVRS+APA SSS    SAGS YV TLPG PFGDGKIFDPL LSDGA P +IKKWREAEIKHGRVAMLASLGVLVAE+YHP FMG DY+GPAV+HFQEI+AQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKE+Y PGDLGFDPL +KP+D A L  M+TKELNNGRLAMIGIAGMLVQEL+NPADIL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219

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BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 350 bits (897), Expect = 2.430e-120
Identity = 178/219 (81.28%), Postives = 194/219 (88.58%), Query Frame = 0

Query:    1 MVSTQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            MV++QMFLGTAA+LIASS AFVAP+AVRS+APA ++S    SAGS YV TLPG PF DGKIFDPL LSDGAAPG+IKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D++GPA+ HFQEI+AQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP   A L  M+TKELNNGRLAMIGIAGML QELVN  DIL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

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BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 4.410e-120
Identity = 177/217 (81.57%), Postives = 192/217 (88.48%), Query Frame = 0

Query:    3 STQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            S+ MFLGTAA+LIASS AFVAPMAVRS+APA S+S    SAGS YV TLPG PFGDGKIFDPL LSDGA PGEIK WREAEIKHGRVAMLA++GV+VAE+YHP FMG DY+GPAV+HFQEI+AQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL++ YSPGDLGFDPL +KPKD AGL  MQTKELNNGRLAMIGIAGMLVQELVNPADIL
Sbjct:    4 SSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220

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BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 1.410e-106
Identity = 163/217 (75.12%), Postives = 183/217 (84.33%), Query Frame = 0

Query:    3 STQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            S+ MFLGTAA+LIASS AFV PMAVRS+APA S+S    SAG+ Y+ TLPG    +GKIFD L L+DGA PGEIK WREAEIKHGRVAMLA++GV+VAE+YHPFFMG DY+GPAV+HFQEITA+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL++ YSPGDLGFDP  IKPKD AGL  MQ KELNNGRLAMIGI GMLVQELVN  DIL
Sbjct:    4 SSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217

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BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 293 bits (751), Expect = 1.550e-98
Identity = 140/160 (87.50%), Postives = 151/160 (94.38%), Query Frame = 0

Query:   60 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMG DY+GPAV+HFQEI+AQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195

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BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 1.290e-96
Identity = 159/219 (72.60%), Postives = 168/219 (76.71%), Query Frame = 0

Query:    1 MVSTQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            MV++QMF+GTAA+LIASS AFVAPMAVRS     SS     SAGS YV TLPG PF DGKIFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191

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BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 294 bits (753), Expect = 4.910e-96
Identity = 141/160 (88.12%), Postives = 151/160 (94.38%), Query Frame = 0

Query:   60 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMG DY+GPAV+HFQEI+AQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391

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BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 4.590e-89
Identity = 130/164 (79.27%), Postives = 143/164 (87.20%), Query Frame = 0

Query:   60 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADILAFLN 223
            KIFDPLGL+DGA  G+IK WREAEIKHGRVAMLASLGVLVAEEYHPFFMG DY+GPAV+HFQEI+A+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL++ YSPGDLGFDPL +KP D   L TMQTKELNNGRLAMIGIAG LVQELVNP +IL FL+
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFLH 178

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BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 2.450e-81
Identity = 130/216 (60.19%), Postives = 160/216 (74.07%), Query Frame = 0

Query:    3 STQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADI 218
            ST   +G A+   AS  AF+ P     SA   S++ +M SAGS YV TLPG PF DGK++DP+GLS  A P +IKKWREAEIKHGRVAMLAS+GVLVAE +HP F+G DY+GPA+ HF+EITA+FP+FWA +LL +A++EY  I   F     VTGEGG++ +Y PGDLGFDPLG+ P+D   L  M+TKELN+GRLAMIGI GM+VQELV P  I
Sbjct:   55 STGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARM-SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPI 269

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BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 7.310e-74
Identity = 127/224 (56.70%), Postives = 159/224 (70.98%), Query Frame = 0

Query:    1 MVSTQMFLGTAASLIASSVAFVAPMAVRSSAPAR--SSSLKMQSAGSAYVETLPGTPFG---DGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 219
            MV++Q+FLGTAA+LIASS AFVAP+A   S+ AR  +SS    +AGS Y  +LPG PFG   +GK FDP GL+    P  IKKWREAE+KHGRV+MLA++G+LV+E +HP FMG  Y+GPAV H Q+I   +P FW  SL  +AFIE  TI  A+ T S VTG G LK  Y PGDLGFDPLG+ PKD      +Q++EL+ GR AMIG+ GM+VQE+V+   IL
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q6_ECTSI	6.620e-124	82.65	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	2.430e-120	81.28	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	4.410e-120	81.57	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	1.410e-106	75.12	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	1.550e-98	87.50	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	1.290e-96	72.60	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
A0A6H5JWB4_9PHAE	4.910e-96	88.13	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7Q7_ECTSI	4.590e-89	79.27	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G5B4_ECTSI	2.450e-81	60.19	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7FQG7_ECTSI	7.310e-74	56.70	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 37..223 e-value: 1.5E-37 score: 131.1
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 50..211 e-value: 3.6E-38 score: 131.6
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 9..214
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 9..214
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..17
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..35
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 36..223
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 18..35
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..20 score: 0.574
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 51..222

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig10477	contig	S-dermatodea_contig10477:477..3808 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig10477.337.1	mRNA_S-dermatodea_contig10477.337.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig10477 251..5309 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig10477.337.1 ID=prot_S-dermatodea_contig10477.337.1|Name=mRNA_S-dermatodea_contig10477.337.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=224bp
MVSTQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVET
LPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVA
EEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAF
DTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLA
MIGIAGMLVQELVNPADILAFLN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln