mRNA_S-dermatodea_contig10477.337.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10477.337.1
Unique NamemRNA_S-dermatodea_contig10477.337.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 2.930e-116
Identity = 181/219 (82.65%), Postives = 198/219 (90.41%), Query Frame = 2 
Query:  227 MVSTQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 883
            MV+TQ+FLG+AA+LIASS AFVAPMAVRS+APA SSS    SAGS YV TLPG PFGDGKIFDPL LSDGA P +IKKWREAEIKHGRVAMLASLGVLVAE+YHP FMG DY+GPAV+HFQEI+AQ+PEFW FSLLGMAFIEYNTIMTAF+TPSAVTGEGGLKE+Y PGDLGFDPL +KP+D A L  M+TKELNNGRLAMIGIAGMLVQEL+NPADIL
Sbjct:    1 MVATQLFLGSAATLIASSTAFVAPMAVRSAAPASSSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADIL 219
[Close]
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 9.020e-113
Identity = 178/219 (81.28%), Postives = 194/219 (88.58%), Query Frame = 2 
Query:  227 MVSTQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 883
            MV++QMFLGTAA+LIASS AFVAP+AVRS+APA ++S    SAGS YV TLPG PF DGKIFDPL LSDGAAPG+IKKWREAEIKHGRVAMLASLG+LVAEEYHP FMG D++GPA+ HFQEI+AQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP   A L  M+TKELNNGRLAMIGIAGML QELVN  DIL
Sbjct:    1 MVASQMFLGTAAALIASSTAFVAPVAVRSAAPASAASALKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 1.610e-112
Identity = 177/220 (80.45%), Postives = 194/220 (88.18%), Query Frame = 2 
Query:  224 IMVSTQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 883
            ++ S+ MFLGTAA+LIASS AFVAPMAVRS+APA S+S    SAGS YV TLPG PFGDGKIFDPL LSDGA PGEIK WREAEIKHGRVAMLA++GV+VAE+YHP FMG DY+GPAV+HFQEI+AQFPEFWAFSLLGMAFIEYNTI  A+  PS VTGEGGL++ YSPGDLGFDPL +KPKD AGL  MQTKELNNGRLAMIGIAGMLVQELVNPADIL
Sbjct:    1 MVASSNMFLGTAATLIASSTAFVAPMAVRSAAPASSASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADIL 220
[Close]
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 4.660e-99
Identity = 163/217 (75.12%), Postives = 183/217 (84.33%), Query Frame = 2 
Query:  233 STQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 883
            S+ MFLGTAA+LIASS AFV PMAVRS+APA S+S    SAG+ Y+ TLPG    +GKIFD L L+DGA PGEIK WREAEIKHGRVAMLA++GV+VAE+YHPFFMG DY+GPAV+HFQEITA+FP+FWA+SLLGMAFIEYNTI  A+  PS VTGEGGL++ YSPGDLGFDP  IKPKD AGL  MQ KELNNGRLAMIGI GMLVQELVN  DIL
Sbjct:    4 SSNMFLGTAATLIASSAAFVTPMAVRSAAPASSASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDIL 217
[Close]
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 294 bits (753), Expect = 2.040e-91
Identity = 140/160 (87.50%), Postives = 151/160 (94.38%), Query Frame = 2 
Query:  404 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 883
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMG DY+GPAV+HFQEI+AQFPEFWAFSLLGMAF+EYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 195
[Close]
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 1.040e-89
Identity = 159/219 (72.60%), Postives = 168/219 (76.71%), Query Frame = 2 
Query:  227 MVSTQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 883
            MV++QMF+GTAA+LIASS AFVAPMAVRS     SS     SAGS YV TLPG PF DGKIFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE                            FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:    1 MVASQMFIGTAATLIASSTAFVAPMAVRSVTTTPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 191
[Close]
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 6.660e-89
Identity = 141/160 (88.12%), Postives = 151/160 (94.38%), Query Frame = 2 
Query:  404 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADIL 883
            +IFDPLGLSDGAAPG+IKKWREAEIKHGRVAMLASLGV+VAE+YHPFFMG DY+GPAV+HFQEI+AQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKE+Y PGDLGFDPL +KP D A L  M+TKELNNGRLAMIGIAGML QELVNPADIL
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADIL 391
[Close]
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 270 bits (690), Expect = 1.970e-82
Identity = 130/164 (79.27%), Postives = 143/164 (87.20%), Query Frame = 2 
Query:  404 KIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADILAFLN 895
            KIFDPLGL+DGA  G+IK WREAEIKHGRVAMLASLGVLVAEEYHPFFMG DY+GPAV+HFQEI+A+FPEFWAFSLL +A IEYNTI  A+  PS VTGEGGL++ YSPGDLGFDPL +KP D   L TMQTKELNNGRLAMIGIAG LVQELVNP +IL FL+
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNILDFLH 178
[Close]
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 5.860e-75
Identity = 133/229 (58.08%), Postives = 168/229 (73.36%), Query Frame = 2 
Query:  197 TLSSLYPQAIMV-STQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVETLPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADI 880
            T +++  + +MV ST   +G A+   AS  AF+ P     SA   S++ +M SAGS YV TLPG PF DGK++DP+GLS  A P +IKKWREAEIKHGRVAMLAS+GVLVAE +HP F+G DY+GPA+ HF+EITA+FP+FWA +LL +A++EY  I   F     VTGEGG++ +Y PGDLGFDPLG+ P+D   L  M+TKELN+GRLAMIGI GM+VQELV P  I
Sbjct:   42 TSNAILKRCVMVTSTGALVGMASWCFASCEAFIVPTPTTLSARPTSTAARM-SAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPI 269
[Close]
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 234 bits (596), Expect = 5.330e-68
Identity = 127/227 (55.95%), Postives = 160/227 (70.48%), Query Frame = 2 
Query:  227 MVSTQMFLGTAASLIASSVAFVAPMAVRSSAPAR--SSSLKMQSAGSAYVETLPGTPFG---DGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVAEEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLAMIGIAGMLVQELVNPADILAFL 892
            MV++Q+FLGTAA+LIASS AFVAP+A   S+ AR  +SS    +AGS Y  +LPG PFG   +GK FDP GL+    P  IKKWREAE+KHGRV+MLA++G+LV+E +HP FMG  Y+GPAV H Q+I   +P FW  SL  +AFIE  TI  A+ T S VTG G LK  Y PGDLGFDPLG+ PKD      +Q++EL+ GR AMIG+ GM+VQE+V+   IL  +
Sbjct:    1 MVTSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGILEHI 227
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10477.337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI2.930e-11682.65Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI9.020e-11381.28Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI1.610e-11280.45Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S0_ECTSI4.660e-9975.12Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI2.040e-9187.50Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE1.040e-8972.60LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
A0A6H5JWB4_9PHAE6.660e-8988.13LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q7_ECTSI1.970e-8279.27Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI5.860e-7558.08Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7FQG7_ECTSI5.330e-6855.95Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10477contigS-dermatodea_contig10477:251..5309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score369.4
Seed ortholog evalue1.2e-99
Seed eggNOG ortholog2880.D7G7S3
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Hectar predicted targeting categorychloroplast
Exons4
Model size2399
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10477.337.1prot_S-dermatodea_contig10477.337.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10477 477..3808 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.9566185-UTR-S-dermatodea_contig10477:250..4761622924158.9566185-UTR-S-dermatodea_contig10477:250..476Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10477 251..476 +
1694079057.9406116-UTR-S-dermatodea_contig10477:250..4761694079057.9406116-UTR-S-dermatodea_contig10477:250..476Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10477 251..476 +
1622924159.0053456-UTR-S-dermatodea_contig10477:3808..53091622924159.0053456-UTR-S-dermatodea_contig10477:3808..5309Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10477 3809..5309 +
1694079057.9805744-UTR-S-dermatodea_contig10477:3808..53091694079057.9805744-UTR-S-dermatodea_contig10477:3808..5309Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10477 3809..5309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.9654515-CDS-S-dermatodea_contig10477:476..6561622924158.9654515-CDS-S-dermatodea_contig10477:476..656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10477 477..656 +
1694079057.9500222-CDS-S-dermatodea_contig10477:476..6561694079057.9500222-CDS-S-dermatodea_contig10477:476..656Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10477 477..656 +
1622924158.9750328-CDS-S-dermatodea_contig10477:1046..11691622924158.9750328-CDS-S-dermatodea_contig10477:1046..1169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10477 1047..1169 +
1694079057.9580228-CDS-S-dermatodea_contig10477:1046..11691694079057.9580228-CDS-S-dermatodea_contig10477:1046..1169Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10477 1047..1169 +
1622924158.983783-CDS-S-dermatodea_contig10477:2025..21091622924158.983783-CDS-S-dermatodea_contig10477:2025..2109Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10477 2026..2109 +
1694079057.9657667-CDS-S-dermatodea_contig10477:2025..21091694079057.9657667-CDS-S-dermatodea_contig10477:2025..2109Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10477 2026..2109 +
1622924158.9967308-CDS-S-dermatodea_contig10477:3523..38081622924158.9967308-CDS-S-dermatodea_contig10477:3523..3808Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10477 3524..3808 +
1694079057.9732974-CDS-S-dermatodea_contig10477:3523..38081694079057.9732974-CDS-S-dermatodea_contig10477:3523..3808Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10477 3524..3808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10477.337.1

>prot_S-dermatodea_contig10477.337.1 ID=prot_S-dermatodea_contig10477.337.1|Name=mRNA_S-dermatodea_contig10477.337.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=224bp
MVSTQMFLGTAASLIASSVAFVAPMAVRSSAPARSSSLKMQSAGSAYVET
LPGTPFGDGKIFDPLGLSDGAAPGEIKKWREAEIKHGRVAMLASLGVLVA
EEYHPFFMGTDYVGPAVNHFQEITAQFPEFWAFSLLGMAFIEYNTIMTAF
DTPSAVTGEGGLKENYSPGDLGFDPLGIKPKDAAGLATMQTKELNNGRLA
MIGIAGMLVQELVNPADILAFLN*
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mRNA from alignment at S-dermatodea_contig10477:251..5309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10477.337.1 ID=mRNA_S-dermatodea_contig10477.337.1|Name=mRNA_S-dermatodea_contig10477.337.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5059bp|location=Sequence derived from alignment at S-dermatodea_contig10477:251..5309+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGACATACGGGTGAGTCACAGGTTCCTGGGCGTTTCCGCGGTTTTTTA
TATGTTTTAATTTTTAATTATACGAATCTCGACAACTCATCATCCACGAG
TCAGGGCCGGTCTGAATACGCACACAGCACCGCCTGCACTCGGTCTTCCC
CAACTCTCTCACAACTCACAACCCGCAGATCACTACCTCGCCCTCAACAC
TCTCTTCTCTCTACCCTCAAGCTATCATGGTGTCTACCCAGATGTTCCTC
GGCACTGCCGCCTCCCTCATCGCGTCCTCTGTGGCGTTCGTCGCCCCCAT
GGCTGTGCGCTCCTCGGCGCCTGCACGGTCCTCGAGCCTCAAGATGCAGA
GCGCCGGCTCCGCGTACGTGGAGACTCTGCCTGGTACTCCGTTCGGTGAC
GGCAAGGTGGGTCACTGGTCGTCTGTCGATGTGCACGGCCATAACAACAA
CATTGCTCTCTGTTGCTGCTGTATAGCGCTTTATCTATGGCCGCGATTGC
TACAGGTAATGCTGTAGGTGCTGTCTCACGCGCGATGTGACATGCACAGC
GGTACAAGTATCATAATAGCATCTGTCAGACGAGCGGAAGAAGAGCGGTT
GTCCTCCTTCCGAAGGGCTCACCGCTGTCCCGAGTGTGTACGTGTGCCGT
GTCGCTGGTAATGACGAGATACCCCTTCCCCCATCATTCTCTGCTCCACC
GAAGACCGTACACATACATGTATGTACTTGTACAAGTATCATACATGTTC
ACTCACTTCCAACTCTGACACTCTCCCTTGCCATCGTCCTCCACAGATCT
TCGACCCGCTCGGCCTTTCGGACGGCGCCGCCCCCGGAGAGATCAAGAAG
TGGCGCGAGGCCGAGATCAAGCACGGACGCGTGGCCATGCTAGCGTCTCT
CGGCGTCCTCGTCGCGGAGGTGAGATCTAATATTTGCCTGTCTTGAGCTT
AGTTTGTTTGTGCTCGCGATGTGAGCGCTCGGACGCCCTCCACGAGTAAT
GAAATTTAGTGGTTCGACTTTGTCGATGGACTACAGTTGTACAAACAAGT
GGTACTGGTTTTTGTTTTTCTGTACATGAAGCACTTTGTGCGCATGATAT
GTGCATGCACAATTTCGCCCTGTTCCAAACGCACCCGCTTGATACTGTAC
TGTTGTATAGCGACGCCAGGTGGCGCTATTATGGGCGATGTACGCGCCAG
TTTGCACCTTTCGTGTCAGATGATGGTTTGGGTGTATTCCATTGATGTTG
ATTCAGACAGGAACGGAGGCCCATATTACAGTGCACAGAGTAGTACGTGT
ATGGGACCTTACGTCTAGGCTTTGTCCGGTACGTGCTCCAAAACCTTGAT
TTTTAGTCATCGCCGCTTATTCAGATGATTACGTCACAAGGTTGGAAATA
GTCATCAAAATCATCCTCGAAGGGTTGGAATATGCGACAGGTAGATAAGT
CGCCCAATTCCGTCTGTATTATGCTTTCTATATAAGTAGTCACCAAAAAC
TGCGATTTTTATTACGTGGTATCTGGCCGTCCTGCTCTATACTCTATACA
GAATATTGGAGGCACGGACAAAATGTGCGTTCGAAACCGCGTAGGGATGT
ACAGGTGAACTAGGTTATGTTTTACATCCAAAATTGTTTCGACCACCGTC
TTTCCTGTTTGGTTAGCAAACACCTTCTTGCGCGGCAGTGCTATTCATAG
GACAGATACTACAGTCACTCTCTCAACCCCCTCGGTCCATGTTTTTCATA
TTTCTCCCGTGTTATGCGTGCGCAGGAGTACCACCCGTTCTTCATGGGCA
CGGACTACGTTGGCCCCGCCGTGAACCACTTCCAGGAGATCACCGCGCAG
TTCCCCGAGGTAAGCCCGCGCCGTTACTGGCATGTCTCCTCAATCGCTCT
TCGAGTTTTGGACGAAGAACTGAAAACTTGAACAGACCGGAGACCCTGAA
ACGTCTAATTAGCCACAAGAAATATCTCGACCTCAACCGGCATCGCGGTG
ATGCGTGTGCCTACGCCCGAGTTGGTCAAAACTCGACTCAAGTCTTTGTG
CCCGGCGAGCGAAACGCGCAGTTGGGTGGGGGCTGTCCCCAAGGAAAATA
TGGCTTGCTGTCAATACTGGGCGAGGGGTCGCTGTCTCGTTATTCGAACG
TGTTAGATTTGATGAATCAACGAGTACGCTCCATCAAACGGAACAGGGTA
AAGAGATCGAGGACCATACAAACTACTGTAACCCGCTGAAGACTAAATCT
TTTATAAACACAGAACTATACTATACTACTGTATTAATAGCAGTGGGGTC
CAATCTTTTTGGTATTAATAGAGGAAAAGTATGGCCCAATCTGACTGAGT
GGAAGATATGGCCTACATTATACGATGCTCTGGTGTCACATTCAATTAAG
AGGTAACTCTGAGAATGGGTTGTTTTTACTTGTGAGATTTTTGTATCAAC
TTGTATTCGAGCCTGTTCTTCTCACTCTTATTTGCGCATCCATTTGTTTT
CGAACAAATTCTCCCGTCCTTACTCCTAGCCCATACAAGCGCGTGTTCAG
CGATAGTGATGGTGAAGCCGCCCCACTACGAACGAAGCCCTCGAACTCGC
ATTATTATACGAAGTATTAATAGTACTAGTCGAATTCGTGGTACTCGGAT
TTAACTTTAACTCAGTTGGTGGCAGTACATGGAGACGAGGCGAACAACAG
TTTACTCGATCAACCAAGCAGAACACGGATTCACCTGAGAATGAGTTGAA
GCCAGGGAAGAAGAACATGAGCAACCTTGGGAGACCAAGCACGATCTCGC
ACTGAGCACAGTGAAAACCCCACAGGGAATTTTGTTCACAGTGGTGGTCG
CGAGCTCCCAGCTAGACGATTCTAACCAAGTTGTGTGCGTGGTCATCACG
TGCTGGTTAAGATCGTCCTTGGCTATCTCTCCCAGGGCCGCTCGGTTCTT
ATATAATCTCCGAAGAGGGATCTTGTGAAGAGGAGAGGCTAGGCTGATCC
AAAAGGATGGTCACTCGTGTGGACTTGACTTGACTTGACTTGACTTGACG
TGAGGGAGATGTAGGTGGATAGTCCCGATGAGCTGGAGACTATGTTTAAT
CAGAAGTTGGTGAGGTGTGATTGTAGTAGTCGTGGCGGGTCCCAGAAGCT
GGGGACCTCGGTATTCTTTTCAGAAAATACTTGCAAGTACCTAACTATGA
TGAGCATGGTGAAATATTTAACTACCCCCCCCCCCCCCCCTTTGCTTGTG
GTTTCCACGATGGTGTTGAGCAGTTCTGGGCGTTCTCCTTGCTGGGAATG
GCGTTCATCGAGTACAACACCATCATGACCGCGTTCGACACGCCTAGCGC
GGTGACCGGCGAGGGGGGGCTGAAGGAGAACTACAGCCCGGGAGACCTCG
GGTTCGACCCCCTTGGCATCAAGCCTAAGGACGCCGCGGGGCTCGCGACC
ATGCAGACGAAGGAGTTGAACAACGGGCGCCTGGCCATGATCGGCATCGC
CGGCATGTTGGTTCAGGAGCTGGTGAACCCGGCCGACATCCTAGCGTTCC
TCAACTAGGGCTAATCCTAGGGCGAGCGAGCCATCGTGCGTTGATAGACG
GGTGGCTTGTGTCCGCATGTGCAAAGGACGGGAGCTAGGCTTCCACGCAC
TTTTGACTCGCCGTTATCGATGAGTATGATCGAGCTAGGGCGGGAGGTCG
TGCGGCGCAATTTAATATTTCCTATGCGTAGTCCAATGAAAGTAGGATTG
GTTGGCGTTCCGACATGGTGACATGATGACATGATGACATGACGTGATCG
TAAGGGTGACGTATTTCCCCTGGCGAGGCGAGTCTGCGGTTCGTTTATCC
GGTCTCGGTGTAATAGTTTTGATATTTTGATAATTTTGCCTTTCTAGCGC
GCAATTTTGAGATTTTGCAGGTTCGGTCGTCACAGCCAGTCGTCCCCTTA
GCGGCGTTGCTTGACTAAGGGTAAAGGGTGGTGGAAGGCATCAGCAAAAT
CCCCCCCTTTTTTGCGAGGCCATTGAACGTTTTAGTCCTTAGTACGTATT
TTGTATCTCTGGCGATACTTGAGTAGTATAGGTTTCTTCTTACGATGCGG
GTTGGAAAGGAGATGGGCAGGATGGTTTTGCGAAGGCGAGGAATAACGTT
CCCAGCTGCCTTGAGTGGGAACAACAAAACAAACAATTTTGAAAAGGAAA
AATGACGCCTCCCGTGCGCGCCACACTTGGTGGAACGTCAAGCGACCCAA
GCCCCTGGAAGGGTGCGGTGGGGCATACACTTTTGAAATCAAAATGCTGG
AAGCGAGATATAGGATTGCCTCGAAGGTCGGCACGATCTCACTCCCTGGA
ATTTCGTATCTTGCCCAGACAGGCCCCCCGCCAAAAAGAAGTTGTTTCAC
GATTTGGTGGGCAGGATTTTCTCCTTGTGGCTTGATTGTTTATGTCGCCA
CATGCAGCGGTGTCACTGCCGCAGCTCCGAGGTCGAATGTTTCTCAACGC
TCACTTCAGCTAAATCGATGGATGTTCGATTTTTTTTATCCATGTGACCT
TGTTTTGTGCAAAATGTCTGGGCGTCGCGTTCGTTCTCGGCAAGCCATCA
TCGAACACAACCCCCCCCCATTTTCGGGCATATAGGATATACTTTCTATT
ATTTTCACGCAGAAGTGATATTTTACGGCTGGATTTCGGGCCTTCCTCGC
GATTTTGTCCCATTTTGGCCCCCGTCCAACTGAGCATGTCAAGTAGGATG
CTATCGTATCGTGGCAGATGTGTGTTTTTCAATCTCGCACCTGTCGATAG
TCATATACTTCGAAGTACAACACGAGTACATACACGTCTCTACGCCACTT
CGTTCTTCTTTTCATTTCTTGACTTGTTTGGGTTGGGTTTGGGTAGAAGT
ATGGATGGTGTCTAAATACAACGCCGGCCGCACACGACACTTGGCACACA
GCCTCGATGCGATCGATCCTTACAAAGAAGTTTTAGCCGAGACACAAAGC
AACTATTCTGGCTCCTTCGAGGAACACGCAAGATCCTTCGAGGCCCTAGC
CAATTCAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10477:251..5309+

>mRNA_S-dermatodea_contig10477.337.1 ID=mRNA_S-dermatodea_contig10477.337.1|Name=mRNA_S-dermatodea_contig10477.337.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at S-dermatodea_contig10477:251..5309+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGTGTCTACCCAGATGTTCCTCGGCACTGCCGCCTCCCTCATCGCGTC
CTCTGTGGCGTTCGTCGCCCCCATGGCTGTGCGCTCCTCGGCGCCTGCAC
GGTCCTCGAGCCTCAAGATGCAGAGCGCCGGCTCCGCGTACGTGGAGACT
CTGCCTGGTACTCCGTTCGGTGACGGCAAGATGGTGTCTACCCAGATGTT
CCTCGGCACTGCCGCCTCCCTCATCGCGTCCTCTGTGGCGTTCGTCGCCC
CCATGGCTGTGCGCTCCTCGGCGCCTGCACGGTCCTCGAGCCTCAAGATG
CAGAGCGCCGGCTCCGCGTACGTGGAGACTCTGCCTGGTACTCCGTTCGG
TGACGGCAAGATCTTCGACCCGCTCGGCCTTTCGGACGGCGCCGCCCCCG
GAGAGATCAAGAAGTGGCGCGAGGCCGAGATCAAGCACGGACGCGTGGCC
ATGCTAGCGTCTCTCGGCGTCCTCGTCGCGGAGATCTTCGACCCGCTCGG
CCTTTCGGACGGCGCCGCCCCCGGAGAGATCAAGAAGTGGCGCGAGGCCG
AGATCAAGCACGGACGCGTGGCCATGCTAGCGTCTCTCGGCGTCCTCGTC
GCGGAGGAGTACCACCCGTTCTTCATGGGCACGGACTACGTTGGCCCCGC
CGTGAACCACTTCCAGGAGATCACCGCGCAGTTCCCCGAGGAGTACCACC
CGTTCTTCATGGGCACGGACTACGTTGGCCCCGCCGTGAACCACTTCCAG
GAGATCACCGCGCAGTTCCCCGAGTTCTGGGCGTTCTCCTTGCTGGGAAT
GGCGTTCATCGAGTACAACACCATCATGACCGCGTTCGACACGCCTAGCG
CGGTGACCGGCGAGGGGGGGCTGAAGGAGAACTACAGCCCGGGAGACCTC
GGGTTCGACCCCCTTGGCATCAAGCCTAAGGACGCCGCGGGGCTCGCGAC
CATGCAGACGAAGGAGTTGAACAACGGGCGCCTGGCCATGATCGGCATCG
CCGGCATGTTGGTTCAGGAGCTGGTGAACCCGGCCGACATCCTAGCGTTC
CTCAACTAGTTCTGGGCGTTCTCCTTGCTGGGAATGGCGTTCATCGAGTA
CAACACCATCATGACCGCGTTCGACACGCCTAGCGCGGTGACCGGCGAGG
GGGGGCTGAAGGAGAACTACAGCCCGGGAGACCTCGGGTTCGACCCCCTT
GGCATCAAGCCTAAGGACGCCGCGGGGCTCGCGACCATGCAGACGAAGGA
GTTGAACAACGGGCGCCTGGCCATGATCGGCATCGCCGGCATGTTGGTTC
AGGAGCTGGTGAACCCGGCCGACATCCTAGCGTTCCTCAACTAG
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