mRNA_S-dermatodea_contig10476.335.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10476.335.1
Unique NamemRNA_S-dermatodea_contig10476.335.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10476.335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10476contigS-dermatodea_contig10476:3682..4974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size314
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10476.335.1prot_S-dermatodea_contig10476.335.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10476 3807..4974 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.8378198-UTR-S-dermatodea_contig10476:3681..38061622924158.8378198-UTR-S-dermatodea_contig10476:3681..3806Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10476 3682..3806 -
1694079057.8970287-UTR-S-dermatodea_contig10476:3681..38061694079057.8970287-UTR-S-dermatodea_contig10476:3681..3806Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10476 3682..3806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.858256-CDS-S-dermatodea_contig10476:3806..38891622924158.858256-CDS-S-dermatodea_contig10476:3806..3889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10476 3807..3889 -
1694079057.904716-CDS-S-dermatodea_contig10476:3806..38891694079057.904716-CDS-S-dermatodea_contig10476:3806..3889Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10476 3807..3889 -
1622924158.8722684-CDS-S-dermatodea_contig10476:4868..49741622924158.8722684-CDS-S-dermatodea_contig10476:4868..4974Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10476 4869..4974 -
1694079057.9149678-CDS-S-dermatodea_contig10476:4868..49741694079057.9149678-CDS-S-dermatodea_contig10476:4868..4974Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10476 4869..4974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10476.335.1

>prot_S-dermatodea_contig10476.335.1 ID=prot_S-dermatodea_contig10476.335.1|Name=mRNA_S-dermatodea_contig10476.335.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=63bp
MTARFKGETSGGFGAPVLLKQRRAPGVQQALLLCTAKIALPDRRDFPANS
PRAISNAGDGAH*
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mRNA from alignment at S-dermatodea_contig10476:3682..4974-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10476.335.1 ID=mRNA_S-dermatodea_contig10476.335.1|Name=mRNA_S-dermatodea_contig10476.335.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1293bp|location=Sequence derived from alignment at S-dermatodea_contig10476:3682..4974- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGCCCGATTCAAGGGCGAGACCTCAGGAGGGTTCGGCGCACCGGT
TCTTCTGAAGCAGAGGAGAGCGCCGGGAGTGCAGCAGGCCCTGCTGCTGT
GTACCGGTGAGATGATGCGCGTTTACCGTACACCCCGACGACGGTTTTTT
TGGCGATGGGTTCTATCTTCTAACCCTAATCGCCTGATACCTAATCTTGC
GGCTTTTTTTTTTCCCTTCTCTGACACACGGTGAAGGGCGCGCTGCGCCA
CATGTTGGCTTGTCCCCTTCCCACGACGGCCTCTCTTGTGTTGTTTTCCT
TAGGCCCATGCATACTTTCACCCAGTGGCCGGATACGCAACGAGTTTGCC
AATGCGACACCACGATCTCTTTTTCACGCTTCGACCCAGCAACACTTGTA
GTGTCATAGGCCATGCTTCTGGAGCAAGTACTAGACTAGACGTGACAAGC
GTGTGCTTGCTATGCATTGTCAAGGGCGTCTCTCTTGGCTGTTCCCGGTG
GCGTGGGAGGCCTGCCTCGGGGCTGATGTTTGTAAATATCTTTGTATTAT
CAAGAGCACCGCGAGGTGTCTCGTTTCGAACGTGGCGTGGTTCAGGCATT
TCTACTTGTTTTTTCAACAGTCAAGGTTGACGTCCGCGGCTTAGAAGTTA
TATAGCCGTTGGAGCCAGCAAGGTTTCCTAGGCTGTCTATCCTCCCTATT
ATATATATGGAGAGTGTGTTTTGATGCAACTTGGGCGTAGAAGTACACAT
CGCTGTTATTATGGTGCCTTGATCTACGCAGGAGAAGAACTGACACGGGG
GCGGTGCACTACGCCAGGACGATGGTGATACTTTCCTAAAGTAAGGGACA
CATTGGTTTAGTCCAGTAAGGGACACGTTGATTTGGTCCGTGGTCCTGCC
GCCGACACCCGCCCGAAGCACCCTCCCCTCATTCGGCCATCCAACAGTTG
TTCTGCCAGGTGCGACCCCAGAAATCGTGGCGTAACACGGCACTTCTCCT
CGCCACAGCAAACACCACGTAGCCAACAATATGACCCCCCCCCCCCCCCC
CCCCCCCCAACCGCCTCCCCCGTCGCTGTGCACAGCCAAAATCGCTCTAC
CAGACAGGCGGGACTTTCCCGCGAATTCTCCACGCGCGATTTCAAACGCA
GGTGACGGAGCGCATTGAATCCTGCGGAGCCCCGTTGTGATCTTCGCCGG
GCCCCAGAAGGATGACGGCGACAACGTGGGCCGTCTGTGGGTTTTTATGG
GAGGGTGGGTCGGAGGGGGAGCCTACATGTGTCGAAAGTCAGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10476:3682..4974-

>mRNA_S-dermatodea_contig10476.335.1 ID=mRNA_S-dermatodea_contig10476.335.1|Name=mRNA_S-dermatodea_contig10476.335.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at S-dermatodea_contig10476:3682..4974- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGCCCGATTCAAGGGCGAGACCTCAGGAGGGTTCGGCGCACCGGT
TCTTCTGAAGCAGAGGAGAGCGCCGGGAGTGCAGCAGGCCCTGCTGCTGT
GTACCGATGACGGCCCGATTCAAGGGCGAGACCTCAGGAGGGTTCGGCGC
ACCGGTTCTTCTGAAGCAGAGGAGAGCGCCGGGAGTGCAGCAGGCCCTGC
TGCTGTGTACCGCCAAAATCGCTCTACCAGACAGGCGGGACTTTCCCGCG
AATTCTCCACGCGCGATTTCAAACGCAGGTGACGGAGCGCATTGACCAAA
ATCGCTCTACCAGACAGGCGGGACTTTCCCGCGAATTCTCCACGCGCGAT
TTCAAACGCAGGTGACGGAGCGCATTGA
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