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Homology
BLAST of mRNA_S-dermatodea_contig10454.324.1 vs. uniprot
Match: A0A6H5K2E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E0_9PHAE) HSP 1 Score: 221 bits (562), Expect = 1.160e-65 Identity = 110/167 (65.87%), Postives = 133/167 (79.64%), Query Frame = 1
Query: 1 LGKPAPRPPGPDLEAVLSVTLASPVLGGSELPPDFLESLVAPYTKGGNEAPLCLETAMQGVNADSFAGGVDVL----KKSGSTGSSSGPLSCPVLITYGGRDVIGEKTVARLKEALSGGDSPVEDKRFEQSGHLPHLDEREEYVTLVQNYITFIDEAWSGKSAAANK 489
LGK +PRPPGP+ EA+LSV LASPVLG +EL PDFLE+L PY K GNE PLCLETAM G ++D FAGGV + + GS +++GPL+CPVLITYG RDVIG+KTV + + LSGGD+PVE +RFE+SGHL HLDEREEYV+LV+NY+TFID+AWSGKS K
Sbjct: 102 LGKASPRPPGPEPEAILSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMAGRSSDGFAGGVAAMNQDRRSKGSAAAAAGPLACPVLITYGKRDVIGDKTVTGITQGLSGGDAPVESRRFEESGHLAHLDEREEYVSLVKNYVTFIDDAWSGKSGETKK 268
BLAST of mRNA_S-dermatodea_contig10454.324.1 vs. uniprot
Match: D8LLW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLW3_ECTSI) HSP 1 Score: 120 bits (300), Expect = 1.910e-27 Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query: 1 LGKPAPRPPGPDLEAVLSVTLASPVLGGSELPPDFLESLVAPYTKGGNEAPLCLETAMQGVNADSFAGGVDVLK-----KSGSTGSSSGPLSCPVLITYG 285
LGK +PRPPGP+ EAVLSV LASPVLG +EL PDFLE+L PY K GNE PLCLETAM G ++D FAGG+ +K K + + +GPL+CPVLITYG
Sbjct: 132 LGKASPRPPGPEPEAVLSVILASPVLGENELSPDFLEALRTPYIKDGNEPPLCLETAMAGRSSDGFAGGLAAMKQDRRSKGSAAAAGAGPLACPVLITYG 231
BLAST of mRNA_S-dermatodea_contig10454.324.1 vs. uniprot
Match: A0A7S3XPS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPS5_HETAK) HSP 1 Score: 73.6 bits (179), Expect = 1.640e-10 Identity = 49/157 (31.21%), Postives = 82/157 (52.23%), Query Frame = 1
Query: 40 EAVLSVTLASPVLGGSEL--PPDFLESLVAPYTK---------GGN----EAPLCLETAMQGVNADSFAGGVDVLKKSGSTGSSSGPLSCPVLITYGGRDVIGEKTVARLKEALSGGDSPVED---KRFEQSGHLPHLDEREEYVTLVQNYITFIDE 456
+ VLSVT SP G +L D LE+ P+ GGN + P+C+E + + +A+++ + LK + S + CP+++TYG RD+I E +V K+ + P + +E SGHL H+DE+E Y+ +VQN++ +D+
Sbjct: 225 QTVLSVTFESPFAKGEDLIEAADALEAKGYPWKTSPNIQSKILGGNPDLKKTPVCMEDSYKTSDAEAYGPEIRALK-GWNCASYVDYVKCPMIVTYGRRDLISETSVTEFKDTFTAPAKPGNEVYLSVYENSGHLAHIDEKETYIQMVQNFLDKVDK 380
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 122.5 |
| Seed ortholog evalue | 1.9e-25 |
| Seed eggNOG ortholog | 2880.D8LLW3 |
| EggNOG OGs | 2E7EQ@1,2SE0Z@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Alpha/beta hydrolase fold-1 |
| Ec32 ortholog | Ec-14_001920.1 |
| Exons | 4 |
| Model size | 1356 |
| Cds size | 492 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622924158.144901-UTR-S-dermatodea_contig10454:3333..4195 | 1622924158.144901-UTR-S-dermatodea_contig10454:3333..4195 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10454 3334..4195 + |
| 1694079057.3847928-UTR-S-dermatodea_contig10454:3333..4195 | 1694079057.3847928-UTR-S-dermatodea_contig10454:3333..4195 | Saccorhiza dermatodea SderLu1190fm monoicous | UTR | S-dermatodea_contig10454 3334..4195 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig10454.324.1 >prot_S-dermatodea_contig10454.324.1 ID=prot_S-dermatodea_contig10454.324.1|Name=mRNA_S-dermatodea_contig10454.324.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=164bp
LGKPAPRPPGPDLEAVLSVTLASPVLGGSELPPDFLESLVAPYTKGGNEA
PLCLETAMQGVNADSFAGGVDVLKKSGSTGSSSGPLSCPVLITYGGRDVI
GEKTVARLKEALSGGDSPVEDKRFEQSGHLPHLDEREEYVTLVQNYITFI
DEAWSGKSAAANK* back to topmRNA from alignment at S-dermatodea_contig10454:614..4195+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-dermatodea_contig10454.324.1 ID=mRNA_S-dermatodea_contig10454.324.1|Name=mRNA_S-dermatodea_contig10454.324.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3582bp|location=Sequence derived from alignment at S-dermatodea_contig10454:614..4195+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGGGGAAGCCCGCCCCTCGCCCGCCAGGTCCTGATTTGGAGGCGGTACT
GTCGGTTACGCTGGCCAGCCCGGTGCTGGGTGGGAGCGAGTTGCCTCCCG
ATTTCTTGGAGAGTCTTGTGGCTCCTTACACCAAGGGCGGGAACGAGGTA
TGCTTGCTTGTGCCCGGGCTTAGGTGAAAACAAGAGGAATTAATCAAGTA
TGGGTTTTGTGGTCATTACGACGCTTTTCTGTACCATTCGACGGTTTCAT
TCTATTTTTAGTATTCCCAGGCTTCTCATTCACAAAGCGGCGCTGTTGTA
ATAGCCCTTTTGGGATATTAGATCGGTGTCTGATGGTCCCAAATGGTCTC
GCATGGTGTTTTTGATAAATTCGGACGCGATGTTTCAATGTTACTCTGAG
CGCGTTTGTTGAGAATCAAGACAACCGTATAGCAGCACTACGCGCAGCCG
CCGAGGTGGCATGCACCCAGCGTGCAGCCATGGGAAACAGTGTCGTCATA
ATACAACGTGTGGCTGGGGCGTTGGGCCGCCGCGAGACGCTGTCTAGTAC
GATGCACTCGCCGATCGATGCTGAGGGCCTCGTACGATGATAGCGCAAAC
ATAAAAACCCGCACGCAAAAGGCGTGCTTGAGTTGCATCGCACGCCAATG
AACACAGAGGCCGGCACGATTCTTTCCAAGCCCGCACCGCTGGCAAACGC
GCCAGACGGCTGGACCTGGGGGCCGGGTGCATATTGAACCTCAACGCGCT
ATCCCGAACAAGTATAAATGCCACCAACTTCACATCCTCCAGACGTCTGG
CTCACACGTCGATACTCCCTGGCCCATACCTCTGTGAGTCCAGATGGCTG
GTCCATACTCCCACACAGTGTACGTCTTGGCCGAACACGTATGCATGCAC
ACGCCTGGGCCAGACGCCCTTACGCATGGTGAATGTGTGGCCCAGAGGCA
TGGATGAATGGGGCAGACGCATGGTATTTCGTGCATAGTTCTGGCCGACA
CTGTCCAGACGTGCACACAGCTCTGGCTGGGCACGTGATAAGTTCGCACG
GTACTTCTGAACCCAGGCGGGGCGATAAATTAAACGAACCGCAACAGCCC
CGCGCCTCCGCCGCCATCGGCACCACCAACGAGCGACTGCTTCAGGCCGT
AAAAAGGAGTACTCTCTTAAACACGGCCGTCGTAGCCCTTCGTCGTTTAT
TCATTTATTACGCCGCTTTTTCTGTTGCAATCTCAGGCGCCGCTGTGCCT
CGAGACCGCGATGCAGGGCGTTAACGCCGACAGTTTCGCCGGTGGCGTAG
ACGTGCTGAAGAAGTCGGGGTCGACGGGGTCATCGTCAGGGCCGCTCTCG
TGTCCCGTCCTTATCACCTACGGCGGGTAAGGGGGGAGAAAACACACGCC
AGAGATGGATACGTCGAGAAATCGTTTTATTTTCACGGCGGTGGGATTCG
TTCCGCTCGCACGCAGCAGTAGGCATTCACGTACTGCGGGAAGTGTATGG
CTTATGTCGAGTACATTCGATGCCCGGATAAATCACACCATCGCACCGCG
CTACCTGTACACTGCTATTCTACGGAAAATATAGCACCCCGCTAGTCTTG
ACTTGCTCAGGCCTCTCTCGTTTCCCCTTTTCTTCACAAACTGCAGTTTA
CCCATCGCGGGGCACTCCTCGCTGCCCGACTGAAGTTCCCATTCGTCGGA
TTCCATTTTTGTTGCGGTTTGGCTCTGCACGAGAAAATCCCAACCGACAA
CCGACCCGCGTTTCCCCTCTTCCTTCCTTGACGGCCTCGGGTGCGACCCG
GTAATGTTTCCTCGCACCGCGCATGGGAACGAACGACTCTTGAGGCAGAC
GAGATGTCATTGGGGAGAAGACAGTCGCTAGGCTGAAGGAGGCGTTGTCC
GGAGGGGATTCTCCGGTTGAAGATAAGCGTTTCGAGCAGAGTGGCCACCT
GCCGCATCTGGACGAGCGAGAGGAATACGTCACGGTGAGGACGAAGCTAG
ATTTTCGAGGTCGTGGAAACCGTGGATGTAGAGCGTTCCGTCTCGATAAA
CCCCGTATCTCCAGATGGGAGCGGTAGGAAGTCTTGGAGGCGTTCTGTGC
CAACAAATATGTGCTCTTTCGTCTCCTTCTCCGTTGTGGTCCACTTGCCA
CACACACCCCGTTCCGCCGCTCTTTTATGGATTGCCTTCTATGTACGGCG
CGAAGCTCATTTTTCGGGGACACGTGCTGGCGCCCTTCTCGTCCCCCCCC
CCCCCCCTCCCCCCGAAGAATATAATCTGAGTGTATCACACATGCATTGT
CGTGTATGTTGTGTGCGTGCGGCGCTTTTGCGTCCGCGCGGAGATCAAAG
TCCCTTGGCGGTACTTGGGAGTATAGTCACGCCTACTGAATGTGCAACAT
TATGTTGCGCGGCATGTCCAATCAACCCACGGCATATCGTTTTGGCGTCG
CAGACTCAAGGATGACGAAAACTCGGCTGATCGCTCCGTCCCGGCGTTGT
TCGGACGCGTGGCCTATGTCCGTTTGGATGCGACATTCGTTATACATGGG
TACGCCCCGCCCCCCCCTGCCCCCCCCCCTGCCGCCGCGGCATCTTTAAC
GCGGTAACACTCCCTTTCCCGCCATCCTCGCCCTCTCGACCAATTCACTA
GCTCGTGCAGAATTACATCACCTTCATAGACGAAGCTTGGTCTGGCAAGA
GCGCTGCAGCCAACAAATAAATGGATGACTGTTCAGCCTGCCCGCTGGCG
TCTGGTGCACTGCTAAATGTCGACGCATTTGGATGTGGGGAGCGTTTTTT
ATCGTCGTGGCGCGGCCTTGCTTCGGGCTGCGTAGTCACTCGGCTATTTC
CGCCGAAGTGGGAAGGAGGCGTTATTGGCGGTATCGCCCGCGCGCGCGAG
CGTGCTCGTGCCGTGGAGATTTGTCCCCCGGTCTCCGATGTGACGATGCC
CTGCCTTACATTTTTCGCTGCGTATGCATGCGTAGTATTTTAGAAGGATG
ATCCTCTTGTTCTACGCCTCTCGTCTTGTTATTCTTAGAAGGCTAGAGCC
GTCCCGGTGCTTTCGGGGGCATCAGCCTGATGGTGATGGTGTGGGCATTC
GGTTGTTCTCTTGGCATACCTCTTCTAGTCGTCGGTGCCGCACGTGTTAC
GCTTGGTGTGTCCGTGCAGTAGTCAGTGCGAGTTCGCGTCAAGTAGTAGG
TGGAGTGCGATGCGGTTATTTAGCGGGTGACTTCGGGCATTATTTAGTGA
TATTCAAAAGTAAATCGAGAGGTCTAGAGCTACAGTGTTGCTACACCACT
TGTATCCATAGTGCTAGAGATTACATACTTTAGTAGGGGGTTGATCGTGC
GTTTTGGGTGATCGTGCAGATAGAAACGTATCACTTGCTGAGATTCAATT
GCGTTTTGTCGTGATGGGCATGCGAGAACTCGAGGACTGGCGCATTTGCA
TTGAAGCAATCCACTCAGAATGTGACATATCATATACTGTACAAGTATCC
TATGGTATTAATAGTAGCTGATGATGTGCGCCCCCAAGGCGGACGAAACA
GCTAGCTACAGGGTACCGAAGACTGGTTGTCA back to topCoding sequence (CDS) from alignment at S-dermatodea_contig10454:614..4195+ >mRNA_S-dermatodea_contig10454.324.1 ID=mRNA_S-dermatodea_contig10454.324.1|Name=mRNA_S-dermatodea_contig10454.324.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at S-dermatodea_contig10454:614..4195+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGGGGAAGCCCGCCCCTCGCCCGCCAGGTCCTGATTTGGAGGCGGTACT
GTCGGTTACGCTGGCCAGCCCGGTGCTGGGTGGGAGCGAGTTGCCTCCCG
ATTTCTTGGAGAGTCTTGTGGCTCCTTACACCAAGGGCGGGAACGAGTTG
GGGAAGCCCGCCCCTCGCCCGCCAGGTCCTGATTTGGAGGCGGTACTGTC
GGTTACGCTGGCCAGCCCGGTGCTGGGTGGGAGCGAGTTGCCTCCCGATT
TCTTGGAGAGTCTTGTGGCTCCTTACACCAAGGGCGGGAACGAGGCGCCG
CTGTGCCTCGAGACCGCGATGCAGGGCGTTAACGCCGACAGTTTCGCCGG
TGGCGTAGACGTGCTGAAGAAGTCGGGGTCGACGGGGTCATCGTCAGGGC
CGCTCTCGTGTCCCGTCCTTATCACCTACGGCGGGCGCCGCTGTGCCTCG
AGACCGCGATGCAGGGCGTTAACGCCGACAGTTTCGCCGGTGGCGTAGAC
GTGCTGAAGAAGTCGGGGTCGACGGGGTCATCGTCAGGGCCGCTCTCGTG
TCCCGTCCTTATCACCTACGGCGGACGAGATGTCATTGGGGAGAAGACAG
TCGCTAGGCTGAAGGAGGCGTTGTCCGGAGGGGATTCTCCGGTTGAAGAT
AAGCGTTTCGAGCAGAGTGGCCACCTGCCGCATCTGGACGAGCGAGAGGA
ATACGTCACGACGAGATGTCATTGGGGAGAAGACAGTCGCTAGGCTGAAG
GAGGCGTTGTCCGGAGGGGATTCTCCGGTTGAAGATAAGCGTTTCGAGCA
GAGTGGCCACCTGCCGCATCTGGACGAGCGAGAGGAATACGTCACGCTCG
TGCAGAATTACATCACCTTCATAGACGAAGCTTGGTCTGGCAAGAGCGCT
GCAGCCAACAAATAACTCGTGCAGAATTACATCACCTTCATAGACGAAGC
TTGGTCTGGCAAGAGCGCTGCAGCCAACAAATAA back to top
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